LOCUS       NM_001080934            3020 bp    mRNA    linear   ROD 04-JUN-2024
DEFINITION  Mus musculus solute carrier family 16 (monocarboxylic acid
            transporters), member 5 (Slc16a5), transcript variant 1, mRNA.
ACCESSION   NM_001080934 XM_895308
VERSION     NM_001080934.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE   1  (bases 1 to 3020)
  AUTHORS   Jones,R.S., Tu,C., Zhang,M., Qu,J. and Morris,M.E.
  TITLE     Characterization and Proteomic-Transcriptomic Investigation of
            Monocarboxylate Transporter 6 Knockout Mice: Evidence of a
            Potential Role in Glucose and Lipid Metabolism
  JOURNAL   Mol Pharmacol 96 (3), 364-376 (2019)
   PUBMED   31436537
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            AL645470.20.
            
            On Jan 30, 2007 this sequence version replaced XM_895308.2.
            
            Transcript Variant: This variant (1) encodes the longest isoform
            (1).
            
            Sequence Note: The RefSeq transcript and protein were derived from
            genomic sequence to make the sequence consistent with the reference
            genome assembly. The genomic coordinates used for the transcript
            record were based on alignments.
            
            ##Evidence-Data-START##
            RNAseq introns :: single sample supports all introns SAMN00849375,
                              SAMN00849376 [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, longest protein
            ##RefSeq-Attributes-END##
            COMPLETENESS: complete on the 3' end.
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-335               AL645470.20        162017-162351       c
            336-479             AL645470.20        159767-159910       c
            480-1292            AL645470.20        154676-155488       c
            1293-3020           AL645470.20        150426-152153       c
FEATURES             Location/Qualifiers
     source          1..3020
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /db_xref="taxon:10090"
                     /chromosome="11"
                     /map="11 80.84 cM"
     gene            1..3020
                     /gene="Slc16a5"
                     /gene_synonym="A130015N09Rik; MCT 5; MCT 6; MCT5"
                     /note="solute carrier family 16 (monocarboxylic acid
                     transporters), member 5"
                     /db_xref="GeneID:217316"
                     /db_xref="MGI:MGI:2443515"
     exon            1..335
                     /gene="Slc16a5"
                     /gene_synonym="A130015N09Rik; MCT 5; MCT 6; MCT5"
                     /inference="alignment:Splign:2.1.0"
     CDS             137..1543
                     /gene="Slc16a5"
                     /gene_synonym="A130015N09Rik; MCT 5; MCT 6; MCT5"
                     /note="isoform 1 is encoded by transcript variant 1;
                     monocarboxylate transporter 5; solute carrier family 16
                     member 5; monocarboxylate transporter 6"
                     /codon_start=1
                     /product="monocarboxylate transporter 6 isoform 1"
                     /protein_id="NP_001074403.1"
                     /db_xref="CCDS:CCDS36373.1"
                     /db_xref="GeneID:217316"
                     /db_xref="MGI:MGI:2443515"
                     /translation="MARALEQADGRWAWVVLLSSLVTQALTLGFPTCIGVFFTDLQRD
                     FQASNSETSWFPSILGAMVHGGGPLCSILVKHFGCRVTMMLGGVLASLGMVVSTFSGS
                     LTHLFLTAGVITGLGMCFSFQSSITVVGLYFVRRRPLANALASMGLSMGVTLWPLLAR
                     YLLETLGWRGAFLIFGGILLHCCVCGALLRPVATNEVPEPKEDPLLPPKIPTRSCLAT
                     CVSTIRYHLAFDILRHNMGFCIYVTGVTWMNLGFALPHIFLVPYAMHHGVDDYWAAML
                     MSIVGFCNIFLRPMAGLLLAGRKSLAAYRKYLFAVAILINGLTNLICTVSADFRVLLG
                     YCLVYSLSMCGVGILVFQVLMDIVPMDRFPSALGLFTILCGVTSLISPPLAGLLLDKT
                     NNFSYVFYMSSGFLVSGSLILGVGFYAAEKKKLKQDGQAKMENATSEMTPMHDLTSED
                     KDSAKKQPYPESIYMTNV"
     exon            336..479
                     /gene="Slc16a5"
                     /gene_synonym="A130015N09Rik; MCT 5; MCT 6; MCT5"
                     /inference="alignment:Splign:2.1.0"
     exon            480..1292
                     /gene="Slc16a5"
                     /gene_synonym="A130015N09Rik; MCT 5; MCT 6; MCT5"
                     /inference="alignment:Splign:2.1.0"
     exon            1293..3020
                     /gene="Slc16a5"
                     /gene_synonym="A130015N09Rik; MCT 5; MCT 6; MCT5"
                     /inference="alignment:Splign:2.1.0"
     regulatory      2965..2970
                     /regulatory_class="polyA_signal_sequence"
                     /gene="Slc16a5"
                     /gene_synonym="A130015N09Rik; MCT 5; MCT 6; MCT5"
                     /note="hexamer: AATAAA"
     regulatory      2975..2980
                     /regulatory_class="polyA_signal_sequence"
                     /gene="Slc16a5"
                     /gene_synonym="A130015N09Rik; MCT 5; MCT 6; MCT5"
                     /note="hexamer: ATTAAA"
     polyA_site      2976
                     /gene="Slc16a5"
                     /gene_synonym="A130015N09Rik; MCT 5; MCT 6; MCT5"
                     /note="major polyA site"
     polyA_site      2984
                     /gene="Slc16a5"
                     /gene_synonym="A130015N09Rik; MCT 5; MCT 6; MCT5"
     polyA_site      3014
                     /gene="Slc16a5"
                     /gene_synonym="A130015N09Rik; MCT 5; MCT 6; MCT5"
                     /note="major polyA site"
ORIGIN      
        1 gtttcagtca cccaggtggt gcggcaggtg ggccagagga gggctggcag cctgccaacc
       61 acaaggggca ttctcttccc ttccaggctg cggtcacaaa ggaccagtaa ggctgtggca
      121 ataccagtaa ctgagaatgg cccgggccct ggaacaagca gatggcagat gggcctgggt
      181 ggtcctccta tcctccctgg tgacgcaggc cctcaccctg ggcttcccca cctgcatcgg
      241 tgtcttcttc actgatctgc agcgcgactt tcaggccagc aacagtgaga cctcgtggtt
      301 tccttccatc ctgggagcca tggtccacgg tgggggaccc ctgtgcagca tcttggtcaa
      361 acatttcggc tgccgagtga ccatgatgct ggggggtgtg ctggccagcc tgggcatggt
      421 agtcagcacc ttctctggct cgctcaccca cctcttcctc accgcaggag tgatcacagg
      481 cctgggcatg tgtttcagct tccagtcgag catcacggta gtgggcttgt attttgtccg
      541 ccggcggccg ctagccaatg cactggcctc catgggactc tccatgggcg tcaccctctg
      601 gccactgctg gcccgatatc ttctggaaac cctgggctgg aggggcgcct tcctcatctt
      661 cggtggcatc ttactccact gttgtgtatg tggagccttg ctgaggcctg ttgccaccaa
      721 cgaggtcccc gagcccaaag aggatcccct tctacctccc aagataccta cacgcagctg
      781 cctggcaaca tgtgtctcaa ccattcggta ccacctggcc tttgacatcc ttcggcacaa
      841 tatgggcttc tgcatatacg tcacgggcgt gacgtggatg aacctgggtt ttgcactgcc
      901 acatatcttc ctagtgccgt acgctatgca tcatggggtg gacgactatt gggcagccat
      961 gctcatgtcc attgttggct tctgcaacat cttcttacgg ccaatggcag ggctgctgct
     1021 ggcaggcagg aagagcttgg ctgcctaccg gaagtacctg tttgctgtgg cgatcctcat
     1081 caacgggctc accaatctaa tatgcacggt gtcagccgac ttccgggtgc tcctgggcta
     1141 ttgcctggtg tacagcctgt ccatgtgtgg agttgggatc ctcgtcttcc aggttctaat
     1201 ggacattgtc ccgatggatc ggttccccag cgccctgggc ctcttcacca tcctgtgtgg
     1261 cgtgacttct ctcatctctc caccattggc tggattgctg ctggacaaga ccaacaactt
     1321 cagctacgtt ttctatatgt cgagtggctt cctcgtctca ggctctctta tcctgggtgt
     1381 gggcttctac gccgcagaga agaagaagct gaagcaagat gggcaagcca aaatggagaa
     1441 cgctacctca gagatgaccc caatgcacga tctcacctca gaagacaagg acagtgccaa
     1501 gaagcaaccg taccctgaaa gcatctatat gaccaatgtc tgaactccag agatcccatg
     1561 tgacctatct ctgagctctg aagtcagtgg gggaagcctt ccttccagga agtaggaaat
     1621 agaagtgggc cttcctggct ttcttccttg ggtcccaaga agattggtct gagtcttgca
     1681 ggaagcagtc atggctagct accttggact ggctcctccc agctgctcct acaacacatc
     1741 actctggggc gtctcattca tccttcccat gtcaactgtt ttcatccttc ttggcctcag
     1801 actattttga caaatttgcc tttcttccaa gaacttactt actcttcttc tcttcccaaa
     1861 caaccaacca tgacccccct cagatcagga aggttaagag tgctgcatca agaagttgag
     1921 tcttatgcta actggagcca tagcaggcac agatgaagac cagtaatact ggtcctggcg
     1981 cctctgcaga gagcagggaa agaaactttt ctgctgtcct ggaaggagcc cttttacttg
     2041 ggtctcagaa gttgtacagt ctgaagagtc ttctgccatt gagcagggcc tgagccagaa
     2101 tctcctttta ccagactcta tccacgtatc cacgtagggg aaggcagacc ttgactaacc
     2161 aggagccaag aagacaggct aggtaactta aggaacatta taaaaactgg cttctatgtg
     2221 caaaccgtag tctgtgctct gctcttggcc tctgaggttc ccctttctcc ggaatgtgtt
     2281 ggaggtatca accctgaggc agaaactggc taaatcggca gctgctgcta gcctgagccc
     2341 atggcctgga gctatgtcca cttactcgct tctggtgctg gtctctgagg tcatctctta
     2401 aggctagctg tcatcagccc aggcttgtcg cagcagggta ctccagggaa ggggaaaacg
     2461 gtctgaatta tatacaaaaa cattccctgc cgcacgggtc atgaactctg gactaagaaa
     2521 agcggaaacc aggcctgagt aaatttcctc cattccctca ggctggcagg aacttcttgg
     2581 ggttgtttgt tggttcaggc tccaccaggc tccagcaaga aaaccttatc aggaaaatga
     2641 ttttattttc atgactgacg ccagccatcc tcctccacaa gtccatctgg catgaataag
     2701 catctttagg aggcgatcgg ttcctctaag gtgctgtcac gagtgccccc tcatggtcaa
     2761 aggaagtact gcagccgtgc atttgctgag ttgcttatgt tcactgtctc tagaccttgg
     2821 gtggagacgg ctgagtaggt aaaggtgctg gctgcatgcc gacaacttga gtttgattcc
     2881 tgggacccac atggacaagg agaggcccca ctaccacaag ttgttctgtg gcgtgcccat
     2941 gtgcgcgcac catacacaca cacaaataaa cgttattaaa aaaatttttt tggcctgtat
     3001 gagatgccat cttccaattg
//
