LOCUS       NM_029612               1152 bp    mRNA    linear   ROD 07-OCT-2024
DEFINITION  Mus musculus SLAM family member 9 (Slamf9), mRNA.
ACCESSION   NM_029612
VERSION     NM_029612.4
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE   1  (bases 1 to 1152)
  AUTHORS   Adams,D.J., Barlas,B., McIntyre,R.E., Salguero,I., van der
            Weyden,L., Barros,A., Vicente,J.R., Karimpour,N., Haider,A.,
            Ranzani,M., Turner,G., Thompson,N.A., Harle,V., Olvera-Leon,R.,
            Robles-Espinoza,C.D., Speak,A.O., Geisler,N., Weninger,W.J.,
            Geyer,S.H., Hewinson,J., Karp,N.A., Fu,B., Yang,F., Kozik,Z.,
            Choudhary,J., Yu,L., van Ruiten,M.S., Rowland,B.D., Lelliott,C.J.,
            Del Castillo Velasco-Herrera,M., Verstraten,R., Bruckner,L.,
            Henssen,A.G., Rooimans,M.A., de Lange,J., Mohun,T.J., Arends,M.J.,
            Kentistou,K.A., Coelho,P.A., Zhao,Y., Zecchini,H., Perry,J.R.B.,
            Jackson,S.P. and Balmus,G.
  CONSRTM   Sanger Mouse Genetics Project
  TITLE     Genetic determinants of micronucleus formation in vivo
  JOURNAL   Nature 627 (8002), 130-136 (2024)
   PUBMED   38355793
REFERENCE   2  (bases 1 to 1152)
  AUTHORS   Mikulin,J.A., Bates,B.L. and Wilson,T.J.
  TITLE     A simplified method for separating renal MPCs using SLAMF9
  JOURNAL   Cytometry A 99 (12), 1209-1217 (2021)
   PUBMED   34092043
REFERENCE   3  (bases 1 to 1152)
  AUTHORS   Butterfield,N.C., Curry,K.F., Steinberg,J., Dewhurst,H.,
            Komla-Ebri,D., Mannan,N.S., Adoum,A.T., Leitch,V.D., Logan,J.G.,
            Waung,J.A., Ghirardello,E., Southam,L., Youlten,S.E.,
            Wilkinson,J.M., McAninch,E.A., Vancollie,V.E., Kussy,F.,
            White,J.K., Lelliott,C.J., Adams,D.J., Jacques,R., Bianco,A.C.,
            Boyde,A., Zeggini,E., Croucher,P.I., Williams,G.R. and
            Bassett,J.H.D.
  TITLE     Accelerating functional gene discovery in osteoarthritis
  JOURNAL   Nat Commun 12 (1), 467 (2021)
   PUBMED   33473114
  REMARK    Erratum:[Nat Commun. 2021 May 28;12(1):3302. doi:
            10.1038/s41467-021-23768-8. PMID: 34050183]
            Publication Status: Online-Only
REFERENCE   4  (bases 1 to 1152)
  AUTHORS   Wilson,T.J., Clare,S., Mikulin,J., Johnson,C.M., Harcourt,K.,
            Lyons,P.A., Dougan,G. and Smith,K.G.C.
  TITLE     Signalling lymphocyte activation molecule family member 9 is found
            on select subsets of antigen-presenting cells and promotes
            resistance to Salmonella infection
  JOURNAL   Immunology 159 (4), 393-403 (2020)
   PUBMED   31880316
  REMARK    GeneRIF: SLAMF9 is found on select subsets of antigen-presenting
            cells and promotes resistance to Salmonella infection.
REFERENCE   5  (bases 1 to 1152)
  AUTHORS   Sever,L., Radomir,L., Stirm,K., Wiener,A., Schottlender,N.,
            Lewinsky,H., Barak,A.F., Friedlander,G., Ben-Dor,S.,
            Becker-Herman,S. and Shachar,I.
  TITLE     SLAMF9 regulates pDC homeostasis and function in health and disease
  JOURNAL   Proc Natl Acad Sci U S A 116 (33), 16489-16496 (2019)
   PUBMED   31346085
  REMARK    GeneRIF: These results suggest the crucial role of SLAMF9 in
            plasmacytoid dendritic cell differentiation, homeostasis, and
            function in the steady state and during experimental autoimmune
            encephalomyelitis.
            Erratum:[Proc Natl Acad Sci U S A. 2019 Sep 24;116(39):19760. doi:
            10.1073/pnas.1914890116. PMID: 31527258]
REFERENCE   6  (bases 1 to 1152)
  AUTHORS   Abdallah,B.M., Ditzel,N., Mahmood,A., Isa,A., Traustadottir,G.A.,
            Schilling,A.F., Ruiz-Hidalgo,M.J., Laborda,J., Amling,M. and
            Kassem,M.
  TITLE     DLK1 is a novel regulator of bone mass that mediates estrogen
            deficiency-induced bone loss in mice
  JOURNAL   J Bone Miner Res 26 (7), 1457-1471 (2011)
   PUBMED   21308776
REFERENCE   7  (bases 1 to 1152)
  AUTHORS   Tang,T., Li,L., Tang,J., Li,Y., Lin,W.Y., Martin,F., Grant,D.,
            Solloway,M., Parker,L., Ye,W., Forrest,W., Ghilardi,N., Oravecz,T.,
            Platt,K.A., Rice,D.S., Hansen,G.M., Abuin,A., Eberhart,D.E.,
            Godowski,P., Holt,K.H., Peterson,A., Zambrowicz,B.P. and de
            Sauvage,F.J.
  TITLE     A mouse knockout library for secreted and transmembrane proteins
  JOURNAL   Nat Biotechnol 28 (7), 749-755 (2010)
   PUBMED   20562862
REFERENCE   8  (bases 1 to 1152)
  AUTHORS   Norkina,O. and De Lisle,R.C.
  TITLE     Potential genetic modifiers of the cystic fibrosis intestinal
            inflammatory phenotype on mouse chromosomes 1, 9, and 10
  JOURNAL   BMC Genet 6, 29 (2005)
   PUBMED   15921521
  REMARK    Publication Status: Online-Only
REFERENCE   9  (bases 1 to 1152)
  AUTHORS   Fraser,C.C., Howie,D., Morra,M., Qiu,Y., Murphy,C., Shen,Q.,
            Gutierrez-Ramos,J.C., Coyle,A., Kingsbury,G.A. and Terhorst,C.
  TITLE     Identification and characterization of SF2000 and SF2001, two new
            members of the immune receptor SLAM/CD2 family
  JOURNAL   Immunogenetics 53 (10-11), 843-850 (2002)
   PUBMED   11862385
REFERENCE   10 (bases 1 to 1152)
  AUTHORS   Fennelly,J.A., Tiwari,B., Davis,S.J. and Evans,E.J.
  TITLE     CD2F-10: a new member of the CD2 subset of the immunoglobulin
            superfamily
  JOURNAL   Immunogenetics 53 (7), 599-602 (2001)
   PUBMED   11685473
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            AI120415.1, AK009505.1 and BE447476.1.
            
            On Apr 8, 2008 this sequence version replaced NM_029612.3.
            
            Publication Note:  This RefSeq record includes a subset of the
            publications that are available for this gene. Please see the Gene
            record to access additional publications.
            
            ##Evidence-Data-START##
            Transcript exon combination :: BC019477.1, AK090041.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMN00849374, SAMN00849375
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on single protein-coding transcript
            ##RefSeq-Attributes-END##
            COMPLETENESS: complete on the 3' end.
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-45                AI120415.1         3-47
            46-1143             AK009505.1         2-1099
            1144-1152           BE447476.1         1-9                 c
FEATURES             Location/Qualifiers
     source          1..1152
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6"
                     /db_xref="taxon:10090"
                     /chromosome="1"
                     /map="1 79.85 cM"
     gene            1..1152
                     /gene="Slamf9"
                     /gene_synonym="2310026I04Rik; CD2F-10; Cd2f10; CD84-H1;
                     SF2001"
                     /note="SLAM family member 9"
                     /db_xref="GeneID:98365"
                     /db_xref="MGI:MGI:1923692"
     exon            1..180
                     /gene="Slamf9"
                     /gene_synonym="2310026I04Rik; CD2F-10; Cd2f10; CD84-H1;
                     SF2001"
                     /inference="alignment:Splign:2.1.0"
     exon            181..522
                     /gene="Slamf9"
                     /gene_synonym="2310026I04Rik; CD2F-10; Cd2f10; CD84-H1;
                     SF2001"
                     /inference="alignment:Splign:2.1.0"
     exon            523..795
                     /gene="Slamf9"
                     /gene_synonym="2310026I04Rik; CD2F-10; Cd2f10; CD84-H1;
                     SF2001"
                     /inference="alignment:Splign:2.1.0"
     exon            796..1145
                     /gene="Slamf9"
                     /gene_synonym="2310026I04Rik; CD2F-10; Cd2f10; CD84-H1;
                     SF2001"
                     /inference="alignment:Splign:2.1.0"
     regulatory      1122..1127
                     /regulatory_class="polyA_signal_sequence"
                     /gene="Slamf9"
                     /gene_synonym="2310026I04Rik; CD2F-10; Cd2f10; CD84-H1;
                     SF2001"
                     /note="hexamer: AATAAA"
     polyA_site      1145
                     /gene="Slamf9"
                     /gene_synonym="2310026I04Rik; CD2F-10; Cd2f10; CD84-H1;
                     SF2001"
                     /note="major polyA site"
ORIGIN      
        1 tggagggaga attatttccc tctctgcttc ctgccagtat caaccagtca ttctgcctct
       61 atggacccct taccagcttg tgtttccaca gcctagccag ctgaccaagt cactcttccc
      121 aggcaagagc tgccaatatg ggggcccttc tgtggtcact cctgctgctg cttcaggaag
      181 ccaaagggtt ttctggagat gatgaggatc ctgaggaagt ggttggtgtc ctgcaagagt
      241 ctatcaacct ctctctggaa ataccatcca atgaagaaat taagcacata gactggctct
      301 ttcaaaacaa cattgccatc gtgaagccag gcaaaaaggg acagccagcc gttatcatgg
      361 cagtggatcc tcgataccgg ggcagagtga gcatctctga gtccagctac tccctgcata
      421 ttagcaatct gacctgggaa gactcagggc tttacaacgc ccaagtcaac ttgaagacat
      481 ctgagtccca catcacgaag tcttaccatc tccgtgtcta ccggaggctg tcaaagcccc
      541 acatcactgt gaactctaac atctcagagg aaggtgtctg taatatatct ctgacgtgct
      601 ccatagagag agcaggcatg gacgtgacct acatctggct ttcatcacag gacagcacta
      661 acacatccca tgaaggctct gtcctcagta catcctggag gcctggtgac aaagctcctt
      721 cctatacttg cagggtcagc aaccccatca gcaacatcag ttcccgtcgc atctctgttg
      781 ggtccttctg tgcagatcct ggatatctgg agaagccttc aatgctctgc ttactggtta
      841 agagcttgtt ccttctccta ctcttggcaa ttctaactgt gggactctgc ctcttccgag
      901 cccagaaaag ctatgagacg ccaagggtga ggaaactcaa gagaaaccgc atcaaactga
      961 ggaagaaggg gaagtctggc cctactcccg tctgattggc ttttgaggtc ctcttctgag
     1021 ctttgtttca ggctctaggg aaattctctg ggggactggt gggattggga tcagagttga
     1081 acatctaaaa gagcagtatt ccctgagaga caccatctga aaataaagcc aagtccctac
     1141 ccctaaaaaa aa
//
