LOCUS       NM_177864               1372 bp    mRNA    linear   ROD 01-AUG-2024
DEFINITION  Mus musculus selection and upkeep of intraepithelial T cells 9
            (Skint9), mRNA.
ACCESSION   NM_177864 XM_910332
VERSION     NM_177864.3
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE   1  (bases 1 to 1372)
  AUTHORS   Boyden,L.M., Lewis,J.M., Barbee,S.D., Bas,A., Girardi,M.,
            Hayday,A.C., Tigelaar,R.E. and Lifton,R.P.
  TITLE     Skint1, the prototype of a newly identified immunoglobulin
            superfamily gene cluster, positively selects epidermal gammadelta T
            cells
  JOURNAL   Nat Genet 40 (5), 656-662 (2008)
   PUBMED   18408721
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            AL627229.10 and AL611968.7.
            
            On Aug 15, 2018 this sequence version replaced NM_177864.2.
            
            Sequence Note: The RefSeq transcript and protein were derived from
            genomic sequence to make the sequence consistent with the reference
            genome assembly. The genomic coordinates used for the transcript
            record were based on alignments.
            
            ##Evidence-Data-START##
            Transcript exon combination :: AK037244.1, EF494907.1 [ECO:0000332]
            RNAseq introns              :: partial sample support SAMN00849375,
                                           SAMN00849383 [ECO:0000350]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on single protein-coding transcript
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-67                AL627229.10        22538-22604         c
            68-148              AL627229.10        7716-7796           c
            149-430             AL627229.10        2473-2754           c
            431-601             AL611968.7         184727-184897       c
            602-706             AL611968.7         183938-184042       c
            707-829             AL611968.7         182183-182305       c
            830-1372            AL611968.7         178995-179537       c
FEATURES             Location/Qualifiers
     source          1..1372
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6"
                     /db_xref="taxon:10090"
                     /chromosome="4"
                     /map="4 51.53 cM"
     gene            1..1372
                     /gene="Skint9"
                     /gene_synonym="A030013N09Rik; Skint-9"
                     /note="selection and upkeep of intraepithelial T cells 9"
                     /db_xref="GeneID:329918"
                     /db_xref="MGI:MGI:3045341"
     exon            1..67
                     /gene="Skint9"
                     /gene_synonym="A030013N09Rik; Skint-9"
                     /inference="alignment:Splign:2.1.0"
     exon            68..148
                     /gene="Skint9"
                     /gene_synonym="A030013N09Rik; Skint-9"
                     /inference="alignment:Splign:2.1.0"
     CDS             73..1032
                     /gene="Skint9"
                     /gene_synonym="A030013N09Rik; Skint-9"
                     /note="Selection and upkeep of intraepithelial T-cells
                     protein 9; skint 9"
                     /codon_start=1
                     /product="selection and upkeep of intraepithelial T-cells
                     protein 9 precursor"
                     /protein_id="NP_808532.1"
                     /db_xref="CCDS:CCDS38839.1"
                     /db_xref="GeneID:329918"
                     /db_xref="MGI:MGI:3045341"
                     /translation="MESSASCLPGFFMSFLLLQNTVLTQAMRSDIKINIQVPDTEGLL
                     LECTSGSLIPPAEMTWRDSNGNIIPHSTAFNSQDRDGLLYLKSSILLKNRAKGPITCS
                     IYNVTTNQEKKRSIVLPDALFKSENMSLMSNKFSCPSIYLITIIFLNFLRGILVFCCL
                     RRKPVCFRNLMSTVMEALYSKMGVCCLLIWECLLLVLYIAFLPIYVSFRSRAFLLDDT
                     YPLYTNWLWNICIILTVIMVLFPGLILCLLWTLNCYGQVSSLPPTSMELSTKDSEQNS
                     SKSDDSQENYDVNCKILETCESKIFSQHQESCEDDTASTLFIS"
     exon            149..430
                     /gene="Skint9"
                     /gene_synonym="A030013N09Rik; Skint-9"
                     /inference="alignment:Splign:2.1.0"
     exon            431..601
                     /gene="Skint9"
                     /gene_synonym="A030013N09Rik; Skint-9"
                     /inference="alignment:Splign:2.1.0"
     exon            602..706
                     /gene="Skint9"
                     /gene_synonym="A030013N09Rik; Skint-9"
                     /inference="alignment:Splign:2.1.0"
     exon            707..829
                     /gene="Skint9"
                     /gene_synonym="A030013N09Rik; Skint-9"
                     /inference="alignment:Splign:2.1.0"
     exon            830..1372
                     /gene="Skint9"
                     /gene_synonym="A030013N09Rik; Skint-9"
                     /inference="alignment:Splign:2.1.0"
     regulatory      1352..1357
                     /regulatory_class="polyA_signal_sequence"
                     /gene="Skint9"
                     /gene_synonym="A030013N09Rik; Skint-9"
                     /note="hexamer: AATATA"
     polyA_site      1372
                     /gene="Skint9"
                     /gene_synonym="A030013N09Rik; Skint-9"
                     /note="major polyA site"
ORIGIN      
        1 attgtttctg agaacaagga ggaagcaagg catgctgaca ttattgcatt gattaaacca
       61 catttgggtg tgatggagtc ctcagcttct tgtttacctg gattcttcat gtcattcctt
      121 ctcttacaga acacagtact cactcaagct atgagatcag atataaagat taacattcag
      181 gttccagata cagaaggact actgctggag tgtacttcag gaagtttgat cccacctgct
      241 gagatgacat ggagagacag caatggaaat ataattccac attcaactgc atttaactct
      301 caggatagag acggattatt gtatttgaag agcagcattc ttctgaagaa cagagcaaaa
      361 ggtcctatta cttgctccat ttacaatgta actactaatc aggagaaaaa gagaagtatt
      421 gtcctaccag atgccctgtt caaatcggag aatatgtcat tgatgtcaaa caaattttca
      481 tgtccttcaa tatatttaat cactataatt tttcttaatt ttctcagagg aatacttgtt
      541 ttttgttgtc tcagaagaaa acctgtttgt ttcagaaatc taatgagtac agtaatggaa
      601 gctttgtata gtaaaatggg agtttgctgt ttgcttatct gggagtgcct actgttagtt
      661 ttgtatattg ccttccttcc tatctacgtg agtttcagaa gtagagcttt tcttttggac
      721 gatacatatc cattgtatac taattggctg tggaacatat gcataatctt gactgttata
      781 atggtacttt tccctggcct cattttgtgt ctactttgga ccctgaactg ttatggtcag
      841 gtgtcttcct tacctccaac aagtatggaa ctttccacaa aggactctga gcaaaatagt
      901 tctaaatctg atgactccca agaaaattat gacgtgaact gcaagatcct agaaacttgt
      961 gaaagtaaaa tatttagtca gcaccaagaa agttgtgaag atgatacagc ttcaaccctc
     1021 ttcatctctt aagactgaat tgcagtcaac tggtaaaata gaggcagtaa agaaagacaa
     1081 aaaagaataa tgatttaaac tataaaattt gtatctataa aatatacaat caacagggac
     1141 ttctgattaa attttgtact gtatgaaaag tatagatttt taaaaacata ttttaataaa
     1201 agacaattac attgcattcc ttctcctctt tcctctctct aggtccttcc aggtaccctc
     1261 cctccaaccc tttccatgtt cccctgctca aattgatact ctctgtttta attattatga
     1321 ttaaactcac atatatgtat atgtatgcac aaatatatat atatacaacc tc
//
