LOCUS       NM_001142775            1423 bp    mRNA    linear   ROD 30-APR-2024
DEFINITION  Mus musculus selection and upkeep of intraepithelial T cells 7
            (Skint7), transcript variant 1, mRNA.
ACCESSION   NM_001142775
VERSION     NM_001142775.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE   1  (bases 1 to 1423)
  AUTHORS   Adams,D.J., Barlas,B., McIntyre,R.E., Salguero,I., van der
            Weyden,L., Barros,A., Vicente,J.R., Karimpour,N., Haider,A.,
            Ranzani,M., Turner,G., Thompson,N.A., Harle,V., Olvera-Leon,R.,
            Robles-Espinoza,C.D., Speak,A.O., Geisler,N., Weninger,W.J.,
            Geyer,S.H., Hewinson,J., Karp,N.A., Fu,B., Yang,F., Kozik,Z.,
            Choudhary,J., Yu,L., van Ruiten,M.S., Rowland,B.D., Lelliott,C.J.,
            Del Castillo Velasco-Herrera,M., Verstraten,R., Bruckner,L.,
            Henssen,A.G., Rooimans,M.A., de Lange,J., Mohun,T.J., Arends,M.J.,
            Kentistou,K.A., Coelho,P.A., Zhao,Y., Zecchini,H., Perry,J.R.B.,
            Jackson,S.P. and Balmus,G.
  CONSRTM   Sanger Mouse Genetics Project
  TITLE     Genetic determinants of micronucleus formation in vivo
  JOURNAL   Nature 627 (8002), 130-136 (2024)
   PUBMED   38355793
REFERENCE   2  (bases 1 to 1423)
  AUTHORS   Boyden,L.M., Lewis,J.M., Barbee,S.D., Bas,A., Girardi,M.,
            Hayday,A.C., Tigelaar,R.E. and Lifton,R.P.
  TITLE     Skint1, the prototype of a newly identified immunoglobulin
            superfamily gene cluster, positively selects epidermal gammadelta T
            cells
  JOURNAL   Nat Genet 40 (5), 656-662 (2008)
   PUBMED   18408721
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            BB614300.1 and EU099306.1.
            
            Transcript Variant: This variant (1) encodes the longer isoform
            (1).
            
            ##Evidence-Data-START##
            Transcript exon combination :: EU099306.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMN00849383, SAMN01164133
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on expression, longest protein
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-162               BB614300.1         1-162
            163-1423            EU099306.1         1-1261
FEATURES             Location/Qualifiers
     source          1..1423
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6"
                     /db_xref="taxon:10090"
                     /chromosome="4"
                     /map="4 51.53 cM"
     gene            1..1423
                     /gene="Skint7"
                     /gene_synonym="C130057D23Rik"
                     /note="selection and upkeep of intraepithelial T cells 7"
                     /db_xref="GeneID:328505"
                     /db_xref="MGI:MGI:3041190"
     exon            1..190
                     /gene="Skint7"
                     /gene_synonym="C130057D23Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            191..268
                     /gene="Skint7"
                     /gene_synonym="C130057D23Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            269..616
                     /gene="Skint7"
                     /gene_synonym="C130057D23Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            617..898
                     /gene="Skint7"
                     /gene_synonym="C130057D23Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            899..1006
                     /gene="Skint7"
                     /gene_synonym="C130057D23Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            1007..1129
                     /gene="Skint7"
                     /gene_synonym="C130057D23Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            1130..1423
                     /gene="Skint7"
                     /gene_synonym="C130057D23Rik"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 agttttctca gtgtatttga gaataacaag ggtgataaat atctccctgg aggaaactgg
       61 ttgaacctgg agagatcacc aactctgagc tagaggaggt gtaggtgaat actgataaag
      121 gagctttgct gaactaccca caggcacaga aggaccagga aagaaattct ttctagattc
      181 tggagctcaa atatgatgaa gcctgagttc ttttgctttt ctggattctg tgtgtacttt
      241 ctttttctgc aagtggtagt atcttcagag aaactgaggg taactactcc cacaagacac
      301 ctgttagcta gagtaggagg ccaggctgag ctcagctgcc aggtgatccc accacacagt
      361 gtgatgcata tggaggtacg ctggttcagg agtggccatt cccaacctgt ttacctatac
      421 agaggtggcc ataaaatgag tgaagaagct gctcctgaat atgcaaatcg tacagagttt
      481 gtgaaggagg ccattggaga aggcaaagtg tccctccgaa ttcataatat aaacattttg
      541 gatgatggac cttaccaatg ttcatttaat ggtagtggct tcattgatgc ggctatcatg
      601 aacctcaatg tgacagcagt tggattggag acagagatac atgttcaggc tcctgatgct
      661 gatggagtca tggtggagtg taattcagga gggtggttcc caaggcccca aatggagtgg
      721 agagatagta agggggcaac acttccgcac tcattaaaat catattcaca ggatgaagcc
      781 agatttttct atatgaagat gactcttctc ctcacaaaca tgtcacatgg cagcatcatt
      841 tgctgtattt tcaaccctgt aacaggtgaa gagaagcaaa caagtatcat tctagcaaat
      901 gaactcttta atcgggaccg tatttggatg gaaagtttag cttccattgt atggataatg
      961 ctctctgtat atattctata tataatctgc ttttactgga gaacagggtg tgcatctgga
     1021 tgcctgtcta aatgtttttg tgtggtgacc tcctggcctg ttcaaatagt gcatttatta
     1081 ttctgtactg gaacattctt tgcaatatat ttacctcacc gcagcagagt ctctctttca
     1141 gatcctcagt ttcccttata caacaactgg ataactgaat tgctgtttgt gatacttttt
     1201 ctgacaatat gttttgcctt gccaatcatt ctcttattca tacaatttca attcacaagt
     1261 ctgactaaat gggagaagaa caaggatggc atcatggacc aaccaagact gggaaaagcc
     1321 catgaaacct caagcctata tagaaaaaaa acaggaaaaa gctgggagca ggagaagtga
     1381 tttccacaag gaagagcctc caactgactg tccagtgtca aaa
//
