LOCUS       NM_001166027            1393 bp    mRNA    linear   ROD 03-APR-2024
DEFINITION  Mus musculus selection and upkeep of intraepithelial T cells 11
            (Skint11), transcript variant 1, mRNA.
ACCESSION   NM_001166027
VERSION     NM_001166027.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE   1  (bases 1 to 1393)
  AUTHORS   Boyden,L.M., Lewis,J.M., Barbee,S.D., Bas,A., Girardi,M.,
            Hayday,A.C., Tigelaar,R.E. and Lifton,R.P.
  TITLE     Skint1, the prototype of a newly identified immunoglobulin
            superfamily gene cluster, positively selects epidermal gammadelta T
            cells
  JOURNAL   Nat Genet 40 (5), 656-662 (2008)
   PUBMED   18408721
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            AK042513.1 and EU099309.1.
            
            Transcript Variant: This variant (1) represents the longer
            transcript and encodes the longer isoform (1).
            
            ##Evidence-Data-START##
            Transcript exon combination :: EU099309.1 [ECO:0000332]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on expression, longest protein
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-29                AK042513.1         2-30
            30-1301             EU099309.1         1-1272
            1302-1393           AK042513.1         730-821
FEATURES             Location/Qualifiers
     source          1..1393
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6"
                     /db_xref="taxon:10090"
                     /chromosome="4"
                     /map="4 51.53 cM"
     gene            1..1393
                     /gene="Skint11"
                     /gene_synonym="A630098G03Rik; Gm569"
                     /note="selection and upkeep of intraepithelial T cells 11"
                     /db_xref="GeneID:230623"
                     /db_xref="MGI:MGI:2685415"
     exon            1..151
                     /gene="Skint11"
                     /gene_synonym="A630098G03Rik; Gm569"
                     /inference="alignment:Splign:2.1.0"
     exon            152..232
                     /gene="Skint11"
                     /gene_synonym="A630098G03Rik; Gm569"
                     /inference="alignment:Splign:2.1.0"
     CDS             157..1251
                     /gene="Skint11"
                     /gene_synonym="A630098G03Rik; Gm569"
                     /note="isoform 1 precursor is encoded by transcript
                     variant 1; selection and upkeep of intraepithelial T-cells
                     protein 11; skint 11"
                     /codon_start=1
                     /product="selection and upkeep of intraepithelial T-cells
                     protein 11 isoform 1 precursor"
                     /protein_id="NP_001159499.1"
                     /db_xref="CCDS:CCDS51270.1"
                     /db_xref="GeneID:230623"
                     /db_xref="MGI:MGI:2685415"
                     /translation="MEPSASCLPGFFMVCILLKITVLTQVMSLDIQINTQIPDTEEGV
                     LVECTAESLFPPAEMTWRDSKGNIIPPSSTFDSQDRAGLLCLKSTILLKNRTEGPITC
                     SIYNKTTNQEKRRSIILSDVLFRPQYMSLMSNNLLYLGIYLIFILFLNFLKGILFCLT
                     KRLVHFRKRMIKIKKVWSNKTRACCPLIWEFLEIVLFIAFLPLYLMFRIRVFTLDEAH
                     ILYNNWLWKVCKTLIAMMILFTVLILFLLWTLNRYGKMPCLSSMNIDVSTHDAEQNSS
                     KSAKFQENYDVAGQMILETYEETIFCQHQESCEEYNYDPLLLSSLDALGTCEDEKFSQ
                     HQESFEEDEDLQSFSDFKIELYSKLGNLTH"
     exon            233..517
                     /gene="Skint11"
                     /gene_synonym="A630098G03Rik; Gm569"
                     /inference="alignment:Splign:2.1.0"
     exon            518..682
                     /gene="Skint11"
                     /gene_synonym="A630098G03Rik; Gm569"
                     /inference="alignment:Splign:2.1.0"
     exon            683..787
                     /gene="Skint11"
                     /gene_synonym="A630098G03Rik; Gm569"
                     /inference="alignment:Splign:2.1.0"
     exon            788..910
                     /gene="Skint11"
                     /gene_synonym="A630098G03Rik; Gm569"
                     /inference="alignment:Splign:2.1.0"
     exon            911..1393
                     /gene="Skint11"
                     /gene_synonym="A630098G03Rik; Gm569"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 aatttgagct atgcagggtg attgagctga ttgctagatt agctctgttc tttcttttca
       61 cacagtaaca ttgacttcca cagaattgtc tctgagaaca cagagggagc aagttcatgc
      121 tgacattttg cattggttaa actacatttg ggtgtgatgg aaccttcagc ttcctgttta
      181 cctggattct tcatggtctg cattctccta aagatcacag tactcaccca agtaatgagc
      241 ttggatatac agataaacac ccagattcca gatacagaag aaggggtact ggtagagtgt
      301 actgcagaaa gtttgttccc acctgctgag atgacatgga gagacagcaa ggggaatata
      361 attccaccct caagcacatt tgactctcag gatagagctg ggttattgtg tttgaagagc
      421 accattcttt tgaaaaacag aacagaaggc cctattactt gctccattta caataaaact
      481 actaatcagg agaaaaggag aagtattatc ctatcagatg tcctattcag accacagtat
      541 atgtcattga tgtcaaacaa tcttttatat cttggaatat atttaatctt tatacttttt
      601 cttaattttc tcaaaggaat acttttttgt ctcacaaaaa gacttgttca tttcagaaaa
      661 cgaatgatta aaatcaagaa agtttggagt aataaaacaa gagcttgctg tccacttatc
      721 tgggagttcc tagagatagt tttgtttatt gccttcctcc ctctctactt gatgttcagg
      781 attagagttt ttactttgga tgaggcacac atattgtata ataattggct gtggaaagta
      841 tgtaaaactt tgattgcaat gatgatactt tttactgtgc tcattttgtt tctactttgg
      901 accctgaacc gttatggtaa gatgccctgc ttatcttcca tgaatataga tgtttctaca
      961 catgacgcgg agcaaaacag ttctaaatct gctaagttcc aagaaaatta tgatgtagca
     1021 ggccaaatga tcctagaaac ttatgaagaa acaatatttt gtcagcatca agaaagttgt
     1081 gaagagtata attatgaccc tcttctgctc tcaagtttag atgccctagg aacttgtgaa
     1141 gatgaaaaat ttagtcagca tcaagaaagt tttgaagagg atgaggatct tcaatctttt
     1201 tcagacttta agattgaatt gtactcgaaa cttggaaact tgacacatta aaaaagacag
     1261 aaaaggataa tgttttgaac tttaaaaatt atatctataa acatataatc aagggggtat
     1321 tctgattaaa ttttgttttg tctaaaaagt atagattttt aaaaatacat ttttaataaa
     1381 atactattat act
//
