LOCUS       XM_036159696            3732 bp    mRNA    linear   ROD 07-FEB-2024
DEFINITION  PREDICTED: Mus musculus signal-regulatory protein alpha (Sirpa),
            transcript variant X9, mRNA.
ACCESSION   XM_036159696
VERSION     XM_036159696.1
DBLINK      BioProject: PRJNA169
KEYWORDS    RefSeq.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_000068.8) annotated using gene prediction method: Gnomon,
            supported by mRNA and EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_000001635.27-RS_2024_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.2
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           RefSeqFE; cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/01/2024
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3732
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6J"
                     /db_xref="taxon:10090"
                     /chromosome="2"
     gene            1..3732
                     /gene="Sirpa"
                     /gene_synonym="Bit; CD172a; Idd13.2; P84; Ptpns1; SHP-1;
                     SHPS-1; SIRP"
                     /note="signal-regulatory protein alpha; Derived by
                     automated computational analysis using gene prediction
                     method: Gnomon. Supporting evidence includes similarity
                     to: 7 mRNAs, 22 ESTs, 1318 long SRA reads, 22 Proteins,
                     and 100% coverage of the annotated genomic feature by
                     RNAseq alignments, including 24 samples with support for
                     all annotated introns"
                     /db_xref="GeneID:19261"
                     /db_xref="MGI:MGI:108563"
     CDS             180..1688
                     /gene="Sirpa"
                     /gene_synonym="Bit; CD172a; Idd13.2; P84; Ptpns1; SHP-1;
                     SHPS-1; SIRP"
                     /codon_start=1
                     /product="tyrosine-protein phosphatase non-receptor type
                     substrate 1 isoform X2"
                     /protein_id="XP_036015589.1"
                     /db_xref="GeneID:19261"
                     /db_xref="MGI:MGI:108563"
                     /translation="MKAIKNPVHAKATTPQHLAEGATGKELKVTQPEKSVSVAAGDST
                     VLNCTLTSLLPVGPIRWYRGVGPSRLLIYSFAGEYVPRIRNVSDTTKRNNMDFSIRIS
                     NVTPADAGIYYCVKFQKGSSEPDTEIQSGGGTEVYVLAKPSPPEVSGPADRGIPDQKV
                     NFTCKSHGFSPRNITLKWFKDGQELHPLETTVNPSGKNVSYNISSTVRVVLNSMDVNS
                     KVICEVAHITLDRSPLRGIANLSNFIRVSPTVKVTQQSPTSMNQVNLTCRAERFYPED
                     LQLIWLENGNVSRNDTPKNLTKNTDGTYNYTSLFLVNSSAHREDVVFTCQVKHDQQPA
                     ITRNHTVLGFAHSSDQGSMQTFPDNNATHNWNVFIGVGVACALLVVLLMAALYLLRIK
                     QKKAKGSTSSTRLHEPEKNAREITQIQDTNDINDITYADLNLPKEKKPAPRAPEPNNH
                     TEYASIETGKVPRPEDTLTYADLDMVHLSRAQPAPKPEPSFSEYASVQVQRK"
ORIGIN      
        1 ccctgccgcg ggcagcctct tgcccactgg agtctaagga ctggccggcc gcggcccatg
       61 gagcccgccg gcccggcccc tggccgccta gggccgctgc tgctctgcct gctgctctcc
      121 gcgtcctgtt tctgtacaga agtacatcaa gatgggctca tgctacacat ttcacagaaa
      181 tgaaggccat caaaaaccct gtccatgcta aagccacaac tccacagcat ttggcagagg
      241 gagccacggg gaaggaactg aaggtgactc agcctgagaa atcagtgtct gttgctgctg
      301 gggattcgac cgttctgaac tgcactttga cctccttgtt gccggtggga cccattaggt
      361 ggtacagagg agtagggcca agccggctgt tgatctacag tttcgcagga gaatacgttc
      421 ctcgaattag aaatgtttca gatactacta agagaaacaa tatggacttt tccatccgta
      481 tcagtaatgt caccccagca gatgctggca tctactactg tgtgaagttc cagaaaggat
      541 catcagagcc tgacacagaa atacaatctg gagggggaac agaggtctat gtactcgcca
      601 aaccttctcc accggaggta tccggcccag cagacagggg catacctgac cagaaagtga
      661 acttcacctg caagtctcat ggcttctctc cccggaatat caccctgaag tggttcaaag
      721 atgggcaaga actccacccc ttggagacca ccgtgaaccc tagtggaaag aatgtctcct
      781 acaacatctc cagcacagtc agggtggtac taaactccat ggatgttaat tctaaggtca
      841 tctgcgaggt agcccacatc accttggata gaagccctct tcgtgggatt gctaacctgt
      901 ctaacttcat ccgagtttca cccaccgtga aggtcaccca acagtccccg acgtcaatga
      961 accaggtgaa cctcacctgc cgggctgaga ggttctaccc cgaggatctc cagctgatct
     1021 ggctggagaa tggaaacgta tcacggaatg acacgcccaa gaatctcaca aagaacacgg
     1081 atgggaccta taattacaca agcttgttcc tggtgaactc atctgctcat agagaggacg
     1141 tggtgttcac gtgccaggtg aagcacgacc aacagccagc gatcacccga aaccataccg
     1201 tgctgggatt tgcccactcg agtgatcaag ggagcatgca aaccttccct gataataatg
     1261 ctacccacaa ctggaatgtc ttcatcggtg tgggcgtggc gtgtgctttg ctcgtagtcc
     1321 tgctgatggc tgctctctac ctcctccgga tcaaacagaa gaaagccaag gggtcaacat
     1381 cttccacacg gttgcacgag cccgagaaga acgccaggga aataacccag atccaggaca
     1441 caaatgacat caacgacatc acatacgcag acctgaatct gcccaaagag aagaagcccg
     1501 caccccgggc ccctgagcct aacaaccaca cagaatatgc aagcattgag acaggcaaag
     1561 tgcctaggcc agaggatacc ctcacctatg ctgacctgga catggtccac ctcagccggg
     1621 cacagccagc ccccaagcct gagccatctt tctcagagta tgctagtgtc caggtccaga
     1681 ggaagtgaat ggggctgtgg tctgtactag gccccatccc cacaagtttt cttgtcctac
     1741 atggagtggc catgacgagg acatccagcc agccaatcct gtccccagaa ggccaggtgg
     1801 cacgggtcct aggaccaggg gtaagggtgg cctttgtctt ccctccgtgg ctcttcaaca
     1861 cctcttgggc acccacgtcc ccttcttccg gaggctgggt gttgcagaac cagagggcga
     1921 actggagaaa gctgcctgga atccaagaag tgttgtgcct cggcccatca ctcgtgggtc
     1981 tggatcctgg tcttggcaac cccaggttgc gtccttgatg ttccagagct tggtcttctg
     2041 tgtggagaag agctcaccat ctctacccaa cttgagcttt gggaccagac tccctttaga
     2101 tcaaaccgcc ccatctgtgg aagaactaca ccagaagtca gcaagttttc agccaacagt
     2161 gctggcctcc ccacctccca ggctgactag ccctggggag aaggaaccct ctcctcctag
     2221 accagcagag actccctggg catgttcagt gtggccccac ctcccttcca gtcccagctt
     2281 gcttcctcca gctagcacta actcagcagc atcgctctgt ggacgcctgt aaattattga
     2341 gaaatgtgaa ctgtgcagtc ttaaagctaa ggtgttagaa aatttgattt atgctgttta
     2401 gttgttgttg ggtttctttt ctttttaatt tctttttctt ttttgatttt ttttctttcc
     2461 cttaaaacaa cagcagcagc atcttggctc tttgtcatgt gttgaatggt tgggtcttgt
     2521 gaagtctgag gtctaacagt ttattgtcct ggaaggattt tcttacagca gaaacagatt
     2581 tttttcaaat tcccagaatc ctgaggacca agaaggatcc ctcagctgct acttccagca
     2641 cccagcgtca ctgggacgaa ccaggccctg ttcttacaag gccacatggc tggccctttg
     2701 cctccatggc tactgtggta agtgcagcct tgtctgaccc aatgctgacc taatgttggc
     2761 cattccacat tgaggggaca aggtcagtga tgcccccctt cactcacaag cacttcagag
     2821 gcatgcagag agaagggaca ctcggccagc tctctgaggt aatcagtgca aggaggagtc
     2881 cgttttttgc cagcaaacct cagcaggatc acactggaac agaacctggt catacctgtg
     2941 acaacacagc tgtgagccag ggcaaaccac ccactgtcac tggctcgaga gtctgggcag
     3001 aggctctgac cctccaccct ttaaactgga tgccggggcc tggctgggcc caatgccaag
     3061 tggttatggc aaccctgact atctggtctt aacatgtagc tcaggaagtg gaggcgctaa
     3121 tgtccccaat ccctggggat tcctgattcc agctattcat gtaagcagag ccaacctgcc
     3181 tatttctgta ggtgcgactg ggatgttagg agcacagcaa ggacccagct ctgtagggct
     3241 ggtgacctga tacttctcat aatggcatct agaagttagg ctgagttggc ctcactggcc
     3301 cagcaaacca gaacttgtct ttgtccgggc catgttcttg ggctgtcttc taattccaaa
     3361 gggttggttg gtaaagctcc acccccttct cctctgccta aagacatcac atgtgtatac
     3421 acacacgggt gtatagatga gttaaaagaa tgtcctcgct ggcatcctaa ttttgtctta
     3481 agtttttttg gagggagaaa ggaacaaggc aagggaagat gtgtagcttt ggctttaacc
     3541 aggcagcctg ggggctccca agcctatgga accctggtac aaagaagaga acagaagcgc
     3601 cctgtgagga gtgggatttg tttttctgta gaccagatga gaaggaaaca ggccctgttt
     3661 tgtacatagt tgcaacttaa aatttttggc ttgcaaaata tttttgtaat aaagatttct
     3721 gggtaacaat aa
//
