LOCUS       XM_030248738            4472 bp    mRNA    linear   ROD 07-FEB-2024
DEFINITION  PREDICTED: Mus musculus signal-regulatory protein alpha (Sirpa),
            transcript variant X2, mRNA.
ACCESSION   XM_030248738
VERSION     XM_030248738.2
DBLINK      BioProject: PRJNA169
KEYWORDS    RefSeq.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_000068.8) annotated using gene prediction method: Gnomon,
            supported by mRNA and EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            On Sep 21, 2020 this sequence version replaced XM_030248738.1.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_000001635.27-RS_2024_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.2
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           RefSeqFE; cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/01/2024
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4472
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6J"
                     /db_xref="taxon:10090"
                     /chromosome="2"
     gene            1..4472
                     /gene="Sirpa"
                     /gene_synonym="Bit; CD172a; Idd13.2; P84; Ptpns1; SHP-1;
                     SHPS-1; SIRP"
                     /note="signal-regulatory protein alpha; Derived by
                     automated computational analysis using gene prediction
                     method: Gnomon. Supporting evidence includes similarity
                     to: 7 mRNAs, 24 ESTs, 1326 long SRA reads, 22 Proteins,
                     and 100% coverage of the annotated genomic feature by
                     RNAseq alignments, including 25 samples with support for
                     all annotated introns"
                     /db_xref="GeneID:19261"
                     /db_xref="MGI:MGI:108563"
     CDS             920..2428
                     /gene="Sirpa"
                     /gene_synonym="Bit; CD172a; Idd13.2; P84; Ptpns1; SHP-1;
                     SHPS-1; SIRP"
                     /codon_start=1
                     /product="tyrosine-protein phosphatase non-receptor type
                     substrate 1 isoform X2"
                     /protein_id="XP_030104598.1"
                     /db_xref="GeneID:19261"
                     /db_xref="MGI:MGI:108563"
                     /translation="MKAIKNPVHAKATTPQHLAEGATGKELKVTQPEKSVSVAAGDST
                     VLNCTLTSLLPVGPIRWYRGVGPSRLLIYSFAGEYVPRIRNVSDTTKRNNMDFSIRIS
                     NVTPADAGIYYCVKFQKGSSEPDTEIQSGGGTEVYVLAKPSPPEVSGPADRGIPDQKV
                     NFTCKSHGFSPRNITLKWFKDGQELHPLETTVNPSGKNVSYNISSTVRVVLNSMDVNS
                     KVICEVAHITLDRSPLRGIANLSNFIRVSPTVKVTQQSPTSMNQVNLTCRAERFYPED
                     LQLIWLENGNVSRNDTPKNLTKNTDGTYNYTSLFLVNSSAHREDVVFTCQVKHDQQPA
                     ITRNHTVLGFAHSSDQGSMQTFPDNNATHNWNVFIGVGVACALLVVLLMAALYLLRIK
                     QKKAKGSTSSTRLHEPEKNAREITQIQDTNDINDITYADLNLPKEKKPAPRAPEPNNH
                     TEYASIETGKVPRPEDTLTYADLDMVHLSRAQPAPKPEPSFSEYASVQVQRK"
ORIGIN      
        1 ccccctccac tctccaccct tgcaagctcc cctgccgcgg gcagcctctt gcccactgga
       61 gtctaaggac tggccgggtg agaggccgag accagggggc gatcggccgc cacttcccca
      121 gtccacctta agaggaccaa gtagccagcc cgccgcgccg acctcagaaa aacaagtttg
      181 cgcaaagtgg tgcgcggcca gcctctgggc agagggagcg gtgcttccac cgcctggcag
      241 ccctgcgcgc ggcggcgcag gtccgagcgg ctggcgggga cccgcacggg cagagcgggc
      301 tcgcgcagag ccgaggcggg cggcgcagct cgcggggcgc actggggcgc gggcgggaag
      361 gtgcgggcgc gaggaggggg cgctcggccg ggccgccctc gcgctggcct cgcgacggct
      421 ccgcacagcc cgcactcgct ctgcgagctg tccccgctcg cgcttgctct ccgatctccg
      481 tccccgctcc ctctccctct tcctctcccc ctctttcctt ctccctcgct atccgctccc
      541 ccgcccccgt gcctctggct ctgcgcctgg ctccctcggg tccgctcccc tttcccgccg
      601 gcctggcccg gcgtcacgct cccggagtct ccccgctcgg cggcgtctca ttgtgggagg
      661 gggtcagatc accccgccgg gcggtggcgc tggggggcag cggaggggga ggggccttag
      721 tcgttcgccc gcgccgcccg cccgcctgcc gagcgcgctc accgccgctc tccctccttg
      781 ctctgcagcc gcggcccatg gagcccgccg gcccggcccc tggccgccta gggccgctgc
      841 tgctctgcct gctgctctcc gcgtcctgtt tctgtacaga agtacatcaa gatgggctca
      901 tgctacacat ttcacagaaa tgaaggccat caaaaaccct gtccatgcta aagccacaac
      961 tccacagcat ttggcagagg gagccacggg gaaggaactg aaggtgactc agcctgagaa
     1021 atcagtgtct gttgctgctg gggattcgac cgttctgaac tgcactttga cctccttgtt
     1081 gccggtggga cccattaggt ggtacagagg agtagggcca agccggctgt tgatctacag
     1141 tttcgcagga gaatacgttc ctcgaattag aaatgtttca gatactacta agagaaacaa
     1201 tatggacttt tccatccgta tcagtaatgt caccccagca gatgctggca tctactactg
     1261 tgtgaagttc cagaaaggat catcagagcc tgacacagaa atacaatctg gagggggaac
     1321 agaggtctat gtactcgcca aaccttctcc accggaggta tccggcccag cagacagggg
     1381 catacctgac cagaaagtga acttcacctg caagtctcat ggcttctctc cccggaatat
     1441 caccctgaag tggttcaaag atgggcaaga actccacccc ttggagacca ccgtgaaccc
     1501 tagtggaaag aatgtctcct acaacatctc cagcacagtc agggtggtac taaactccat
     1561 ggatgttaat tctaaggtca tctgcgaggt agcccacatc accttggata gaagccctct
     1621 tcgtgggatt gctaacctgt ctaacttcat ccgagtttca cccaccgtga aggtcaccca
     1681 acagtccccg acgtcaatga accaggtgaa cctcacctgc cgggctgaga ggttctaccc
     1741 cgaggatctc cagctgatct ggctggagaa tggaaacgta tcacggaatg acacgcccaa
     1801 gaatctcaca aagaacacgg atgggaccta taattacaca agcttgttcc tggtgaactc
     1861 atctgctcat agagaggacg tggtgttcac gtgccaggtg aagcacgacc aacagccagc
     1921 gatcacccga aaccataccg tgctgggatt tgcccactcg agtgatcaag ggagcatgca
     1981 aaccttccct gataataatg ctacccacaa ctggaatgtc ttcatcggtg tgggcgtggc
     2041 gtgtgctttg ctcgtagtcc tgctgatggc tgctctctac ctcctccgga tcaaacagaa
     2101 gaaagccaag gggtcaacat cttccacacg gttgcacgag cccgagaaga acgccaggga
     2161 aataacccag atccaggaca caaatgacat caacgacatc acatacgcag acctgaatct
     2221 gcccaaagag aagaagcccg caccccgggc ccctgagcct aacaaccaca cagaatatgc
     2281 aagcattgag acaggcaaag tgcctaggcc agaggatacc ctcacctatg ctgacctgga
     2341 catggtccac ctcagccggg cacagccagc ccccaagcct gagccatctt tctcagagta
     2401 tgctagtgtc caggtccaga ggaagtgaat ggggctgtgg tctgtactag gccccatccc
     2461 cacaagtttt cttgtcctac atggagtggc catgacgagg acatccagcc agccaatcct
     2521 gtccccagaa ggccaggtgg cacgggtcct aggaccaggg gtaagggtgg cctttgtctt
     2581 ccctccgtgg ctcttcaaca cctcttgggc acccacgtcc ccttcttccg gaggctgggt
     2641 gttgcagaac cagagggcga actggagaaa gctgcctgga atccaagaag tgttgtgcct
     2701 cggcccatca ctcgtgggtc tggatcctgg tcttggcaac cccaggttgc gtccttgatg
     2761 ttccagagct tggtcttctg tgtggagaag agctcaccat ctctacccaa cttgagcttt
     2821 gggaccagac tccctttaga tcaaaccgcc ccatctgtgg aagaactaca ccagaagtca
     2881 gcaagttttc agccaacagt gctggcctcc ccacctccca ggctgactag ccctggggag
     2941 aaggaaccct ctcctcctag accagcagag actccctggg catgttcagt gtggccccac
     3001 ctcccttcca gtcccagctt gcttcctcca gctagcacta actcagcagc atcgctctgt
     3061 ggacgcctgt aaattattga gaaatgtgaa ctgtgcagtc ttaaagctaa ggtgttagaa
     3121 aatttgattt atgctgttta gttgttgttg ggtttctttt ctttttaatt tctttttctt
     3181 ttttgatttt ttttctttcc cttaaaacaa cagcagcagc atcttggctc tttgtcatgt
     3241 gttgaatggt tgggtcttgt gaagtctgag gtctaacagt ttattgtcct ggaaggattt
     3301 tcttacagca gaaacagatt tttttcaaat tcccagaatc ctgaggacca agaaggatcc
     3361 ctcagctgct acttccagca cccagcgtca ctgggacgaa ccaggccctg ttcttacaag
     3421 gccacatggc tggccctttg cctccatggc tactgtggta agtgcagcct tgtctgaccc
     3481 aatgctgacc taatgttggc cattccacat tgaggggaca aggtcagtga tgcccccctt
     3541 cactcacaag cacttcagag gcatgcagag agaagggaca ctcggccagc tctctgaggt
     3601 aatcagtgca aggaggagtc cgttttttgc cagcaaacct cagcaggatc acactggaac
     3661 agaacctggt catacctgtg acaacacagc tgtgagccag ggcaaaccac ccactgtcac
     3721 tggctcgaga gtctgggcag aggctctgac cctccaccct ttaaactgga tgccggggcc
     3781 tggctgggcc caatgccaag tggttatggc aaccctgact atctggtctt aacatgtagc
     3841 tcaggaagtg gaggcgctaa tgtccccaat ccctggggat tcctgattcc agctattcat
     3901 gtaagcagag ccaacctgcc tatttctgta ggtgcgactg ggatgttagg agcacagcaa
     3961 ggacccagct ctgtagggct ggtgacctga tacttctcat aatggcatct agaagttagg
     4021 ctgagttggc ctcactggcc cagcaaacca gaacttgtct ttgtccgggc catgttcttg
     4081 ggctgtcttc taattccaaa gggttggttg gtaaagctcc acccccttct cctctgccta
     4141 aagacatcac atgtgtatac acacacgggt gtatagatga gttaaaagaa tgtcctcgct
     4201 ggcatcctaa ttttgtctta agtttttttg gagggagaaa ggaacaaggc aagggaagat
     4261 gtgtagcttt ggctttaacc aggcagcctg ggggctccca agcctatgga accctggtac
     4321 aaagaagaga acagaagcgc cctgtgagga gtgggatttg tttttctgta gaccagatga
     4381 gaaggaaaca ggccctgttt tgtacatagt tgcaacttaa aatttttggc ttgcaaaata
     4441 tttttgtaat aaagatttct gggtaacaat aa
//
