LOCUS       NM_001378448             873 bp    mRNA    linear   ROD 23-FEB-2022
DEFINITION  Mus musculus Siglec family like 1 (Siglecl1), transcript variant 1,
            mRNA.
ACCESSION   NM_001378448 XM_003945786
VERSION     NM_001378448.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE   1  (bases 1 to 873)
  AUTHORS   Diez-Roux G, Banfi S, Sultan M, Geffers L, Anand S, Rozado D, Magen
            A, Canidio E, Pagani M, Peluso I, Lin-Marq N, Koch M, Bilio M,
            Cantiello I, Verde R, De Masi C, Bianchi SA, Cicchini J, Perroud E,
            Mehmeti S, Dagand E, Schrinner S, Nurnberger A, Schmidt K, Metz K,
            Zwingmann C, Brieske N, Springer C, Hernandez AM, Herzog S, Grabbe
            F, Sieverding C, Fischer B, Schrader K, Brockmeyer M, Dettmer S,
            Helbig C, Alunni V, Battaini MA, Mura C, Henrichsen CN,
            Garcia-Lopez R, Echevarria D, Puelles E, Garcia-Calero E, Kruse S,
            Uhr M, Kauck C, Feng G, Milyaev N, Ong CK, Kumar L, Lam M, Semple
            CA, Gyenesei A, Mundlos S, Radelof U, Lehrach H, Sarmientos P,
            Reymond A, Davidson DR, Dolle P, Antonarakis SE, Yaspo ML, Martinez
            S, Baldock RA, Eichele G and Ballabio A.
  TITLE     A high-resolution anatomical atlas of the transcriptome in the
            mouse embryo
  JOURNAL   PLoS Biol 9 (1), e1000582 (2011)
   PUBMED   21267068
  REMARK    Publication Status: Online-Only
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            AC154108.3.
            
            On Feb 13, 2020 this sequence version replaced XM_003945786.2.
            
            Sequence Note: The RefSeq transcript and protein were derived from
            genomic sequence to make the sequence consistent with the reference
            genome assembly. The genomic coordinates used for the transcript
            record were based on alignments.
            
            ##Evidence-Data-START##
            Transcript exon combination :: SRR5189685.271966.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMN00849384 [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on expression, longest protein
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-104               AC154108.3         126334-126437
            105-192             AC154108.3         128035-128122
            193-474             AC154108.3         128498-128779
            475-580             AC154108.3         129225-129330
            581-731             AC154108.3         130062-130212
            732-873             AC154108.3         133596-133737
FEATURES             Location/Qualifiers
     source          1..873
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6"
                     /db_xref="taxon:10090"
                     /chromosome="7"
                     /map="7"
     gene            1..873
                     /gene="Siglecl1"
                     /gene_synonym="100039946; Gm2511"
                     /note="Siglec family like 1"
                     /db_xref="GeneID:100039946"
                     /db_xref="MGI:MGI:3780678"
     exon            1..104
                     /gene="Siglecl1"
                     /gene_synonym="100039946; Gm2511"
                     /inference="alignment:Splign:2.1.0"
     exon            105..192
                     /gene="Siglecl1"
                     /gene_synonym="100039946; Gm2511"
                     /inference="alignment:Splign:2.1.0"
     CDS             168..848
                     /gene="Siglecl1"
                     /gene_synonym="100039946; Gm2511"
                     /note="isoform 1 is encoded by transcript variant 1"
                     /codon_start=1
                     /product="SIGLEC family-like protein 1 isoform 1"
                     /protein_id="NP_001365377.1"
                     /db_xref="GeneID:100039946"
                     /db_xref="MGI:MGI:3780678"
                     /translation="MDPPHAQLEPARLLNSFCSVEKILQCSCSFHGIPTPSVRWWVDG
                     APVDVNSGHGHFQVTSTTLGPWDNSTLSLARDPEMGTVLLCEGKNQHGIHGLSILLMS
                     RRGPLAPQIFLEALLRGVVYAAMAITLLFLCLLPFIVKLLRTKQAKKCAQMREQKNSV
                     AGTDQGSHLKPREPRKSRTKLPSEEQLSEKEDNLKPRKTMETASCTKFPSPWELQKPM
                     ETPEPPSP"
     exon            193..474
                     /gene="Siglecl1"
                     /gene_synonym="100039946; Gm2511"
                     /inference="alignment:Splign:2.1.0"
     exon            475..580
                     /gene="Siglecl1"
                     /gene_synonym="100039946; Gm2511"
                     /inference="alignment:Splign:2.1.0"
     exon            581..731
                     /gene="Siglecl1"
                     /gene_synonym="100039946; Gm2511"
                     /inference="alignment:Splign:2.1.0"
     exon            732..873
                     /gene="Siglecl1"
                     /gene_synonym="100039946; Gm2511"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 gttcatccaa agccaattcc ggattggcag agagcgactg cacaccagtt ggttcgccgg
       61 gtgcctcttt ctatgctagc cagcctgtca atcctcagct cttgttgtca tcgacttact
      121 catgacagta aatagcattg catacctggg aattcttgct gttacagatg gacccaccac
      181 atgcacagct cgaacctgcc agacttctta actccttctg ctctgtggag aagatattgc
      241 agtgcagttg ttccttccat gggatcccca ctccttctgt gcgatggtgg gtggacggtg
      301 cccctgtgga tgtgaacagt ggacatggcc acttccaggt gacctctacc acacttggtc
      361 cctgggacaa cagcaccctc agcctggcca gggacccaga aatgggcaca gttcttctct
      421 gtgaggggaa gaaccaacat ggaatccatg gtctgagcat ccttctgatg tcaagaaggg
      481 gccctttggc tccccagatt ttcctggaag ctctgctacg gggtgttgtc tatgcagcca
      541 tggcaatcac actacttttt ctctgcctcc tccccttcat agtgaaactt ctcaggacaa
      601 agcaggcaaa gaagtgtgca cagatgagag aacagaagaa ctctgtggct ggaacagacc
      661 agggatccca tttgaagccc agggagccta ggaaatccag aactaagcta ccctctgagg
      721 agcagctctc ggaaaaagaa gataatctga agccaaggaa gaccatggaa actgcatcat
      781 gtacaaagtt cccatcaccc tgggaattac aaaagcccat ggagactcca gaacccccaa
      841 gtccataata aacttgaggt cctgcagatc tga
//
