LOCUS       XM_030252507            4503 bp    mRNA    linear   ROD 07-FEB-2024
DEFINITION  PREDICTED: Mus musculus SHOX homeobox 2 (Shox2), transcript variant
            X4, mRNA.
ACCESSION   XM_030252507
VERSION     XM_030252507.2
DBLINK      BioProject: PRJNA169
KEYWORDS    RefSeq.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_000069.7) annotated using gene prediction method: Gnomon,
            supported by EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            On Sep 21, 2020 this sequence version replaced XM_030252507.1.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_000001635.27-RS_2024_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.2
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           RefSeqFE; cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/01/2024
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4503
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6J"
                     /db_xref="taxon:10090"
                     /chromosome="3"
     gene            1..4503
                     /gene="Shox2"
                     /gene_synonym="6330543G17Rik; OG12; Og12x; Prx3; SHOT"
                     /note="SHOX homeobox 2; Derived by automated computational
                     analysis using gene prediction method: Gnomon. Supporting
                     evidence includes similarity to: 1 EST, 166 long SRA
                     reads, 2 Proteins, and 100% coverage of the annotated
                     genomic feature by RNAseq alignments, including 7 samples
                     with support for all annotated introns"
                     /db_xref="GeneID:20429"
                     /db_xref="MGI:MGI:1201673"
     CDS             2004..2576
                     /gene="Shox2"
                     /gene_synonym="6330543G17Rik; OG12; Og12x; Prx3; SHOT"
                     /codon_start=1
                     /product="short stature homeobox protein 2 isoform X2"
                     /protein_id="XP_030108367.1"
                     /db_xref="GeneID:20429"
                     /db_xref="MGI:MGI:1201673"
                     /translation="MEDEGQTKIKQRRSRTNFTLEQLNELERLFDETHYPDAFMREEL
                     SQRLGLSEARVQVWFQNRRAKCRKQENQLHKGVLIGAASQFEACRVAPYVNVGALRMP
                     FQQVQAQLQLDSAVAHAHHHLHPHLAAHAPYMMFPAPPFGLPLATLAADSASAASVVA
                     AAAAAKTTSKNSSIADLRLKAKKHAAALGL"
ORIGIN      
        1 gccttccctt atcctcgggg cgggagagga cccgggaccc gagcgggagg agggcggcat
       61 cgcagagggc cctggacccc agctttggga gataccggga tagtggaggg gtaggaggcc
      121 agactgctcc gtcgtgggtg gggtcctcgc gtgggggagg gcgtggggtt tcgcgcaccc
      181 ttctctgtcg ctccggttgc accgaaatat gtttttcgcg agcgggagga tggggccgcg
      241 ctgcgggacg gcgaagtttg tgtggcccgc ggcgagaagg ggtgcggcag gggctcacta
      301 ggaggccggt tgtaactagc ccgtagtccc gagtttgcca gaaccccttt cctaagccta
      361 aaggagagaa ggggagggga gagaaagagg agagccacac gacattgccc ttctttagat
      421 ttgccatcaa aaccactgta actctgcaaa gcccccaaat ctccggatct tggggaccaa
      481 acttcacatt cttactgaac agttaaggta ggagccagcc aaaggtccag gccaaggtga
      541 ttccctctcg gtggaggaat tgaggagtag agggtggggg acgacgacga ggacactaca
      601 tacacaattt ctttactggc tagaatcgtg cagtacttta ggagagagag agaaagagat
      661 ggagagagag agagagagag agagagagag agagagagag agagagagag agagactttt
      721 ggagagagca gtgttagaaa aaggctttat ctaaccggtg aagcgtccat caactcaaag
      781 ttaaaaatta atttggcact cggtactgca gtaactggtg tgctgccata tttttccaat
      841 taagaaaata tgtggcatgc gtagaatcac aaatttaagc aagcaattaa cttgtttata
      901 acacggtctg ttcctgttta ggccattaag tggaaagttg ggggcgaaag agacattata
      961 ttaagtctat taatcaactt gaaatttgga tttgttttcc tttgaagccc ctaaactttg
     1021 aggggaatcc actctggggg tgacaacaga caaagccagt ccaccttccc atctgaagaa
     1081 tatatgttcc tgtttaaatt ttactaagat gttagtgaga ttgtcctagt aatgttttct
     1141 attaaattga cccctaatgt ttgctgtgac cttatctact tccttcccgg aggaagaaca
     1201 aacgtccaca aaatgaactc tgagaagcag aaatacaggc aataaataag gttactgtat
     1261 agaatgccaa gctggggcaa gatggggcgc tttgccttca ccgagatccc ggccggccgt
     1321 gttcccctaa atttagaacg tgatagggta aaatgataaa ggggccccca gagtaaccct
     1381 tcaaggttca tagctctgag actcgggtta catagccctg gcaagcctgg gtgagccagt
     1441 tgctggggtt gttgatttcc aagctctggg caagtgttaa tttctttgta gcttggctct
     1501 ttcgacttaa ttttttcccc tctgtgttga tccggttcct gggttgggag gaatcaaaaa
     1561 cagcctctac tatctaaact tagctttgac agtggacatc catctccaaa tcatgcagag
     1621 gatgaaggtt gggtggacct tgtattgata tgggcctgac tttgactgtc ctcatcattg
     1681 ccttttgaca tacatatata ccacccctcg tgtggctcta tttgctcaca ctgccagagc
     1741 tcctatcttt tacatggaag gacagcaaag tagcaacgaa tgtgaggggg aaaatgcata
     1801 ttttattaaa catccgagcg gctggatgca tgaaaaggtt ttgaacagcc aatagaaacc
     1861 gaggaatgtt ctgcttgaac ctgttgatct cagtgggttt aagcctttag ggtcgatcct
     1921 tggtttccac cggggaggga gaaggagagg acagatgcag cgtgtcccct gaactgaagg
     1981 atcgcaaaga cgatgcgaaa gggatggagg acgaaggcca gaccaaaatc aagcagaggc
     2041 gaagtcggac caattttacc ctggaacaac tcaacgagct ggagaggctt ttcgatgaga
     2101 cccactatcc agacgctttc atgcgcgagg aattgagcca gcgactgggg ctctctgagg
     2161 cccgagtaca ggtttggttt caaaatcgaa gagctaagtg tagaaaacag gaaaatcaac
     2221 ttcacaaagg tgtccttata ggagccgcta gccagtttga agcttgtaga gttgcaccct
     2281 atgtcaacgt aggtgcttta aggatgccat ttcagcaggt tcaggcgcag ctgcagctgg
     2341 acagcgccgt ggcgcacgcg caccaccacc tgcatccgca cctggccgcg cacgcgcctt
     2401 acatgatgtt cccggcaccg cccttcggac tgccgctggc cacgctggcc gcggactcgg
     2461 cctcggccgc ctcggtggtg gccgctgccg ccgccgccaa gaccaccagc aagaactcca
     2521 gcatcgcgga tctcagactg aaagctaaaa agcacgcggc cgccctgggt ctgtgacgcc
     2581 ggcgccagcg ccacggtcgg tggagcctcc taagcggcgc gatcctgcac gccctccgcg
     2641 accggcttct cccgcacccg cttctgaccg tcgcccaggc ctgtcccttc cccgctgact
     2701 gccgcctttt ctttctgcac cctggatccc cagggcggga ctctgcgctg gacccgggat
     2761 cccacgaggg ccaccagccc aggggctcct gcccacccgc ccttgggact aaaattcggc
     2821 tttgtaggag cgggtttggg gaagtctgga tagagactgg acaaaggagt gtggccacag
     2881 tgagaagtgg atagcgccac agctgcggcg atggactcgt tcataggaat aaaatcttgc
     2941 taacagcaaa tgagcaaaaa caaaaaagaa tagagaacaa actagaaaga aaacgagaaa
     3001 gggagcttgt ttcatattgc tatttggctg gaattagaga gagaacgacg aagcaaaaac
     3061 aattcttaaa attattttgt acataaaaat acggaaaaat aacctggatg aatcttgaga
     3121 gaaaggggga gggagggatt taccaactaa aatgtatgtt ttttttttaa tggtccaaga
     3181 aaacaaaaca gaaggaagag gtatacttat ttaaagaatt aagatggaaa aaaagcgcag
     3241 ctgggaagtt cacaggtttt gaagctgacc tttttctgcg aagttcactt taataggaga
     3301 catttgataa gagaggcggg cctcctttta cgttgaatct gatgctttga gttttaaaac
     3361 accatgtatg gaagagcaag aagagggaag acagtgtgaa aacgaggagg gaaaaaagga
     3421 cgttcataca aaaaagaaag aaaagaaaag aaaaagcgat accacagaca gtgattcctc
     3481 tgagaaattt acattatggc agaactgtcc agactgctga cagtcaattc tggtttgcat
     3541 gttactagta ttccattgat ggtgtcccct cccctcccac tctcacgtgc actcactaca
     3601 ctttcattct cagtatgaaa agcgtctgga aattgatgtg aatccatata taatttgtcc
     3661 ggcctttgat cccaaggggc aaagggaaaa aaaaagtgtc ataagggagt aaaatacact
     3721 ctgagtcttc caagaacacg gaggctgtta ggaaatatgg gcaaagaaaa gagaagagca
     3781 aatgaagtca cgaaggtaca ctgcagggca tcgtgatagg cgctttatct gttctctacc
     3841 ttttcgtgaa ttccctcttg ctagtttaag tcctatttga ggacaatgct ttattcccac
     3901 cccacccctc ctctctatcc tgtcaaattc accttaaacg atacccagct aggtacagac
     3961 actaggtttg tgtataatat gttgataaac acgaacaaag tttattttgg ctataatgtg
     4021 tgaactaatg gttgactttc aacatttgca ttttatctca caaaagtgta tctattcaag
     4081 taatctttgt ttttgtttca attcatgtag ctatttaaac agggatacct tgggctaagc
     4141 aacctgtagc cccaattctc tagcaagcct ctttagaacc ccctttaatt tacatgaaag
     4201 aggaaaagct cttcttactg aactttggta tgcgtttgag ctttgtaact atttgttctc
     4261 catgaaaaca aaattattta tatttgccat attttttcta gtgtattaag ttattttaaa
     4321 cgaaagaaga tgctgttatg acgtgttgtc agtacaaaat gtttcagctc cacttctgtt
     4381 aaacctttta aataagtgcc aagttattaa cctaagacaa ttgaatgaaa atagtattgt
     4441 ttcatttgat ggggtgcgcg tcatctttgt tcttgttact attaaaatat ccgggatact
     4501 ctt
//
