LOCUS       XM_006501216            4992 bp    mRNA    linear   ROD 07-FEB-2024
DEFINITION  PREDICTED: Mus musculus SHOX homeobox 2 (Shox2), transcript variant
            X2, mRNA.
ACCESSION   XM_006501216
VERSION     XM_006501216.3
DBLINK      BioProject: PRJNA169
KEYWORDS    RefSeq.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_000069.7) annotated using gene prediction method: Gnomon,
            supported by mRNA and EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            On Sep 21, 2020 this sequence version replaced XM_006501216.2.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_000001635.27-RS_2024_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.2
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           RefSeqFE; cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/01/2024
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4992
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6J"
                     /db_xref="taxon:10090"
                     /chromosome="3"
     gene            1..4992
                     /gene="Shox2"
                     /gene_synonym="6330543G17Rik; OG12; Og12x; Prx3; SHOT"
                     /note="SHOX homeobox 2; Derived by automated computational
                     analysis using gene prediction method: Gnomon. Supporting
                     evidence includes similarity to: 1 mRNA, 3 ESTs, 148 long
                     SRA reads, and 100% coverage of the annotated genomic
                     feature by RNAseq alignments, including 7 samples with
                     support for all annotated introns"
                     /db_xref="GeneID:20429"
                     /db_xref="MGI:MGI:1201673"
     CDS             2457..3065
                     /gene="Shox2"
                     /gene_synonym="6330543G17Rik; OG12; Og12x; Prx3; SHOT"
                     /codon_start=1
                     /product="short stature homeobox protein 2 isoform X1"
                     /protein_id="XP_006501279.1"
                     /db_xref="GeneID:20429"
                     /db_xref="MGI:MGI:1201673"
                     /translation="MEDEGQTKIKQRRSRTNFTLEQLNELERLFDETHYPDAFMREEL
                     SQRLGLSEARVQVWFQNRRAKCRKQENQLHKGVLIGAASQFEACRVAPYVNVGALRMP
                     FQQDSHCNVTPLSFQVQAQLQLDSAVAHAHHHLHPHLAAHAPYMMFPAPPFGLPLATL
                     AADSASAASVVAAAAAAKTTSKNSSIADLRLKAKKHAAALGL"
ORIGIN      
        1 actgccttcc cttatcctcg gggcgggaga ggacccggga cccgagcggg aggagggcgg
       61 catcgcagag ggccctggac cccagctttg ggagataccg ggatagtgga ggggtaggag
      121 gccagactgc tccgtcgtgg gtggggtcct cgcgtggggg agggcgtggg gtttcgcgca
      181 cccttctctg tcgctccggt tgcaccgaaa tatgtttttc gcgagcggga ggatggggcc
      241 gcgctgcggg acggcgaagt ttgtgtggcc cgcggcgaga aggggtgcgg caggggctca
      301 ctaggaggcc ggttgtaact agcccgtagt cccgagtttg ccagaacccc tttcctaagc
      361 ctaaaggaga gaaggggagg ggagagaaag aggagagcca cacgacattg cccttcttta
      421 gatttgccat caaaaccact gtaactctgc aaagccccca aatctccgga tcttggggac
      481 caaacttcac attcttactg aacagttaag gtaggagcca gccaaaggtc caggccaagg
      541 tgattccctc tcggtggagg aattgaggag tagagggtgg gggacgacga cgaggacact
      601 acatacacaa tttctttact ggctagaatc gtgcagtact ttaggagaga gagagaaaga
      661 gatggagaga gagagagaga gagagagaga gagagagaga gagagagaga gagagagact
      721 tttggagaga gcagtgttag aaaaaggctt tatctaaccg gtgaagcgtc catcaactca
      781 aagttaaaaa ttaatttggc actcggtact gcagtaactg gtgtgctgcc atatttttcc
      841 aattaagaaa atatgtggca tgcgtagaat cacaaattta agcaagcaat taacttgttt
      901 ataacacggt ctgttcctgt ttaggccatt aagtggaaag ttgggggcga aagagacatt
      961 atattaagtc tattaatcaa cttgaaattt ggatttgttt tcctttgaag cccctaaact
     1021 ttgaggggaa tccactctgg gggtgacaac agacaaagcc agtccacctt cccatctgaa
     1081 gaatatatgt tcctgtttaa attttactaa gatgttagtg agattgtcct agtaatgttt
     1141 tctattaaat tgacccctaa tgtttgctgt gaccttatct acttccttcc cggaggaaga
     1201 acaaacgtcc acaaaatgaa ctctgagaag cagaaataca ggcaataaat aaggttactg
     1261 tatagaatgc caagctgggg caagatgggg cgctttgcct tcaccgagat cccggccggc
     1321 cgtgttcccc taaatttaga acgtgatagg gtaaaatgat aaaggggccc ccagagtaac
     1381 ccttcaaggt tcatagctct gagactcggg ttacatagcc ctggcaagcc tgggtgagcc
     1441 agttgctggg gttgttgatt tccaagctct gggcaagtgt taatttcttt gtagcttggc
     1501 tctttcgact taattttttc ccctctgtgt tgatccggtt cctgggttgg gaggaatcaa
     1561 aaacagcctc tactatctaa acttagcttt gacagtggac atccatctcc aaatcatgca
     1621 gaggatgaag gttgggtgga ccttgtattg atatgggcct gactttgact gtcctcatca
     1681 ttgccttttg acatacatat ataccacccc tcgtgtggct ctatttgctc acactgccag
     1741 agctcctatc ttttacatgg aaggacagca aagtagcaac gaatgtgagg gggaaaatgc
     1801 atattttatt aaacatccga gcggctggat gcatgaaaag gttttgaaca gccaatagaa
     1861 accgaggaat gttctgcttg aacctgttga tctcagtggg tttaagcctt tagggtcgat
     1921 ccttggtttc caccggggag ggagaaggag aggacagatg cagcggtggg ttttgctgac
     1981 caccagagtc tgtctgattt gccgcctcta cccttctggc ccagcgtggg cggccagtca
     2041 tccaggccgc caacatggcg tggttgcctg tgccaatccg acccgagtct ggcagggagc
     2101 acagggactg cctagttgct gatggaacca tccgtagggg tctggtccga gcccttgggt
     2161 acccggggac gtggctttcg gcgcagcgct gtaccagaat ctcgttttcc tgctgcaacc
     2221 tttcagcggg cccagttgtt cctaaattag accagcaagt ttgcgggagg caaagggcca
     2281 gaggcagcag aggctggcgg gacagcggaa cagccctctg gggatagctg gcgtgcgagg
     2341 ccatcgcgtg gccttgccgc gccctttaac cgagaccggg ctctgggaga ggcccgcgca
     2401 gcgcttttga tttcctgtcc cctgaactga aggatcgcaa agacgatgcg aaagggatgg
     2461 aggacgaagg ccagaccaaa atcaagcaga ggcgaagtcg gaccaatttt accctggaac
     2521 aactcaacga gctggagagg cttttcgatg agacccacta tccagacgct ttcatgcgcg
     2581 aggaattgag ccagcgactg gggctctctg aggcccgagt acaggtttgg tttcaaaatc
     2641 gaagagctaa gtgtagaaaa caggaaaatc aacttcacaa aggtgtcctt ataggagccg
     2701 ctagccagtt tgaagcttgt agagttgcac cctatgtcaa cgtaggtgct ttaaggatgc
     2761 catttcagca ggatagtcat tgcaacgtga cgcccttgtc ctttcaggtt caggcgcagc
     2821 tgcagctgga cagcgccgtg gcgcacgcgc accaccacct gcatccgcac ctggccgcgc
     2881 acgcgcctta catgatgttc ccggcaccgc ccttcggact gccgctggcc acgctggccg
     2941 cggactcggc ctcggccgcc tcggtggtgg ccgctgccgc cgccgccaag accaccagca
     3001 agaactccag catcgcggat ctcagactga aagctaaaaa gcacgcggcc gccctgggtc
     3061 tgtgacgccg gcgccagcgc cacggtcggt ggagcctcct aagcggcgcg atcctgcacg
     3121 ccctccgcga ccggcttctc ccgcacccgc ttctgaccgt cgcccaggcc tgtcccttcc
     3181 ccgctgactg ccgccttttc tttctgcacc ctggatcccc agggcgggac tctgcgctgg
     3241 acccgggatc ccacgagggc caccagccca ggggctcctg cccacccgcc cttgggacta
     3301 aaattcggct ttgtaggagc gggtttgggg aagtctggat agagactgga caaaggagtg
     3361 tggccacagt gagaagtgga tagcgccaca gctgcggcga tggactcgtt cataggaata
     3421 aaatcttgct aacagcaaat gagcaaaaac aaaaaagaat agagaacaaa ctagaaagaa
     3481 aacgagaaag ggagcttgtt tcatattgct atttggctgg aattagagag agaacgacga
     3541 agcaaaaaca attcttaaaa ttattttgta cataaaaata cggaaaaata acctggatga
     3601 atcttgagag aaagggggag ggagggattt accaactaaa atgtatgttt tttttttaat
     3661 ggtccaagaa aacaaaacag aaggaagagg tatacttatt taaagaatta agatggaaaa
     3721 aaagcgcagc tgggaagttc acaggttttg aagctgacct ttttctgcga agttcacttt
     3781 aataggagac atttgataag agaggcgggc ctccttttac gttgaatctg atgctttgag
     3841 ttttaaaaca ccatgtatgg aagagcaaga agagggaaga cagtgtgaaa acgaggaggg
     3901 aaaaaaggac gttcatacaa aaaagaaaga aaagaaaaga aaaagcgata ccacagacag
     3961 tgattcctct gagaaattta cattatggca gaactgtcca gactgctgac agtcaattct
     4021 ggtttgcatg ttactagtat tccattgatg gtgtcccctc ccctcccact ctcacgtgca
     4081 ctcactacac tttcattctc agtatgaaaa gcgtctggaa attgatgtga atccatatat
     4141 aatttgtccg gcctttgatc ccaaggggca aagggaaaaa aaaagtgtca taagggagta
     4201 aaatacactc tgagtcttcc aagaacacgg aggctgttag gaaatatggg caaagaaaag
     4261 agaagagcaa atgaagtcac gaaggtacac tgcagggcat cgtgataggc gctttatctg
     4321 ttctctacct tttcgtgaat tccctcttgc tagtttaagt cctatttgag gacaatgctt
     4381 tattcccacc ccacccctcc tctctatcct gtcaaattca ccttaaacga tacccagcta
     4441 ggtacagaca ctaggtttgt gtataatatg ttgataaaca cgaacaaagt ttattttggc
     4501 tataatgtgt gaactaatgg ttgactttca acatttgcat tttatctcac aaaagtgtat
     4561 ctattcaagt aatctttgtt tttgtttcaa ttcatgtagc tatttaaaca gggatacctt
     4621 gggctaagca acctgtagcc ccaattctct agcaagcctc tttagaaccc cctttaattt
     4681 acatgaaaga ggaaaagctc ttcttactga actttggtat gcgtttgagc tttgtaacta
     4741 tttgttctcc atgaaaacaa aattatttat atttgccata ttttttctag tgtattaagt
     4801 tattttaaac gaaagaagat gctgttatga cgtgttgtca gtacaaaatg tttcagctcc
     4861 acttctgtta aaccttttaa ataagtgcca agttattaac ctaagacaat tgaatgaaaa
     4921 tagtattgtt tcatttgatg gggtgcgcgt catctttgtt cttgttacta ttaaaatatc
     4981 cgggatactc tt
//
