LOCUS       NM_001099303             899 bp    mRNA    linear   ROD 30-APR-2024
DEFINITION  Mus musculus shisa like 2A (Shisal2a), mRNA.
ACCESSION   NM_001099303 XM_620088 XM_916116
VERSION     NM_001099303.2
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE   1  (bases 1 to 899)
  AUTHORS   Adams,D.J., Barlas,B., McIntyre,R.E., Salguero,I., van der
            Weyden,L., Barros,A., Vicente,J.R., Karimpour,N., Haider,A.,
            Ranzani,M., Turner,G., Thompson,N.A., Harle,V., Olvera-Leon,R.,
            Robles-Espinoza,C.D., Speak,A.O., Geisler,N., Weninger,W.J.,
            Geyer,S.H., Hewinson,J., Karp,N.A., Fu,B., Yang,F., Kozik,Z.,
            Choudhary,J., Yu,L., van Ruiten,M.S., Rowland,B.D., Lelliott,C.J.,
            Del Castillo Velasco-Herrera,M., Verstraten,R., Bruckner,L.,
            Henssen,A.G., Rooimans,M.A., de Lange,J., Mohun,T.J., Arends,M.J.,
            Kentistou,K.A., Coelho,P.A., Zhao,Y., Zecchini,H., Perry,J.R.B.,
            Jackson,S.P. and Balmus,G.
  CONSRTM   Sanger Mouse Genetics Project
  TITLE     Genetic determinants of micronucleus formation in vivo
  JOURNAL   Nature 627 (8002), 130-136 (2024)
   PUBMED   38355793
REFERENCE   2  (bases 1 to 899)
  AUTHORS   Tang,T., Li,L., Tang,J., Li,Y., Lin,W.Y., Martin,F., Grant,D.,
            Solloway,M., Parker,L., Ye,W., Forrest,W., Ghilardi,N., Oravecz,T.,
            Platt,K.A., Rice,D.S., Hansen,G.M., Abuin,A., Eberhart,D.E.,
            Godowski,P., Holt,K.H., Peterson,A., Zambrowicz,B.P. and de
            Sauvage,F.J.
  TITLE     A mouse knockout library for secreted and transmembrane proteins
  JOURNAL   Nat Biotechnol 28 (7), 749-755 (2010)
   PUBMED   20562862
REFERENCE   3  (bases 1 to 899)
  AUTHORS   Lin,Q., Donahue,S.L., Moore-Jarrett,T., Cao,S., Osipovich,A.B. and
            Ruley,H.E.
  TITLE     Mutagenesis of diploid mammalian genes by gene entrapment
  JOURNAL   Nucleic Acids Res 34 (20), e139 (2006)
   PUBMED   17062627
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            AL627238.15.
            
            On Feb 15, 2013 this sequence version replaced NM_001099303.1.
            
            Sequence Note: The RefSeq transcript and protein were derived from
            genomic sequence to make the sequence consistent with the reference
            genome assembly. The genomic coordinates used for the transcript
            record were based on alignments.
            
            ##Evidence-Data-START##
            Transcript exon combination :: SRR7345562.2849360.1,
                                           ERR3363660.2883295.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMN01164135 [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-494               AL627238.15        109756-110249       c
            495-634             AL627238.15        103941-104080       c
            635-899             AL627238.15        94371-94635         c
FEATURES             Location/Qualifiers
     source          1..899
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6"
                     /db_xref="taxon:10090"
                     /chromosome="4"
                     /map="4 50.47 cM"
     gene            1..899
                     /gene="Shisal2a"
                     /gene_synonym="Fam159a"
                     /note="shisa like 2A"
                     /db_xref="GeneID:545667"
                     /db_xref="MGI:MGI:3651644"
     exon            1..494
                     /gene="Shisal2a"
                     /gene_synonym="Fam159a"
                     /inference="alignment:Splign:2.1.0"
     CDS             313..882
                     /gene="Shisal2a"
                     /gene_synonym="Fam159a"
                     /note="membrane protein FAM159A; family with sequence
                     similarity 159, member A"
                     /codon_start=1
                     /product="protein shisa-like-2A"
                     /protein_id="NP_001092773.1"
                     /db_xref="CCDS:CCDS38833.1"
                     /db_xref="GeneID:545667"
                     /db_xref="MGI:MGI:3651644"
                     /translation="MSGACSSYVSAEQEVVRGFSCPLPGGEAAAVFCCGFRDHKYCCD
                     DPHSFFPYEHNYMWWLSIGALVGLSTAAVVLLAFLITACVLCYLFISSKPQTKLDPGL
                     SLQTTGSKEMSPDHHGLNTAIPMEVPGVSSPRQSSSSNTHLESNKKQTVSPTCLPQNQ
                     FMATVTASNIPGSPDEISVPTPGPHGPVP"
     exon            495..634
                     /gene="Shisal2a"
                     /gene_synonym="Fam159a"
                     /inference="alignment:Splign:2.1.0"
     exon            635..899
                     /gene="Shisal2a"
                     /gene_synonym="Fam159a"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 atccaccttg cctctctggc tgtcgcgtgg tgtctcggca gccggggcga ggaggcagcc
       61 cccaccctgg actgggtccc cacgtgcacc cctgcctccg cgcccgcgca cctgaccacc
      121 gggtccccgg gcgccccgtc ctcaccgcgc gcctccgcgc ctttcgccgt gcctttctct
      181 gcagcgcctc tacctgcgca cttccctgcc tgcctggccc tcgggctctt tctcaagatc
      241 tgcggggtct ccggccgttg tctctcgctc acccgctgtc ggtccgtccg tccagggagc
      301 caaggaggcg cgatgagcgg cgcctgctcg agctacgtga gcgctgagca ggaggtggtg
      361 cgcggcttca gctgcccgct gccagggggc gaagcggctg ctgtcttctg ctgtggcttc
      421 cgcgaccaca agtactgctg cgacgacccg cacagcttct tcccctacga gcacaactac
      481 atgtggtggc tcagcatcgg agcgctcgtg ggcctgtcca cggcagcagt ggtccttctg
      541 gccttcctca tcactgcctg tgtgctctgt tacctgttca tcagctcaaa gcctcagacc
      601 aagctggacc ccggcttaag cttgcagaca acaggctcca aggagatgtc acctgaccac
      661 catggtttga acacagcaat cccgatggag gtaccagggg taagctctcc ccggcagagt
      721 tcatcctcga acacacatct ggaaagcaac aagaagcaga ccgtgagccc cacatgtctc
      781 ccccagaacc agttcatggc cacagtgact gctagcaaca ttccaggcag tcctgacgag
      841 atctctgtcc ccacccctgg cccacacgga ccagtcccat aaacatccaa taaaagtct
//
