LOCUS       NM_001374162            6031 bp    mRNA    linear   ROD 02-MAY-2024
DEFINITION  Mus musculus shisa like 1 (Shisal1), transcript variant 3, mRNA.
ACCESSION   NM_001374162 XM_006521441
VERSION     NM_001374162.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE   1  (bases 1 to 6031)
  AUTHORS   Adams,D.J., Barlas,B., McIntyre,R.E., Salguero,I., van der
            Weyden,L., Barros,A., Vicente,J.R., Karimpour,N., Haider,A.,
            Ranzani,M., Turner,G., Thompson,N.A., Harle,V., Olvera-Leon,R.,
            Robles-Espinoza,C.D., Speak,A.O., Geisler,N., Weninger,W.J.,
            Geyer,S.H., Hewinson,J., Karp,N.A., Fu,B., Yang,F., Kozik,Z.,
            Choudhary,J., Yu,L., van Ruiten,M.S., Rowland,B.D., Lelliott,C.J.,
            Del Castillo Velasco-Herrera,M., Verstraten,R., Bruckner,L.,
            Henssen,A.G., Rooimans,M.A., de Lange,J., Mohun,T.J., Arends,M.J.,
            Kentistou,K.A., Coelho,P.A., Zhao,Y., Zecchini,H., Perry,J.R.B.,
            Jackson,S.P. and Balmus,G.
  CONSRTM   Sanger Mouse Genetics Project
  TITLE     Genetic determinants of micronucleus formation in vivo
  JOURNAL   Nature 627 (8002), 130-136 (2024)
   PUBMED   38355793
REFERENCE   2  (bases 1 to 6031)
  AUTHORS   Blackshaw,S., Harpavat,S., Trimarchi,J., Cai,L., Huang,H.,
            Kuo,W.P., Weber,G., Lee,K., Fraioli,R.E., Cho,S.H., Yung,R.,
            Asch,E., Ohno-Machado,L., Wong,W.H. and Cepko,C.L.
  TITLE     Genomic analysis of mouse retinal development
  JOURNAL   PLoS Biol 2 (9), E247 (2004)
   PUBMED   15226823
REFERENCE   3  (bases 1 to 6031)
  AUTHORS   Mu,X., Beremand,P.D., Zhao,S., Pershad,R., Sun,H., Scarpa,A.,
            Liang,S., Thomas,T.L. and Klein,W.H.
  TITLE     Discrete gene sets depend on POU domain transcription factor
            Brn3b/Brn-3.2/POU4f2 for their expression in the mouse embryonic
            retina
  JOURNAL   Development 131 (6), 1197-1210 (2004)
   PUBMED   14973295
REFERENCE   4  (bases 1 to 6031)
  AUTHORS   Okazaki,N., Kikuno,R., Ohara,R., Inamoto,S., Koseki,H., Hiraoka,S.,
            Saga,Y., Nagase,T., Ohara,O. and Koga,H.
  TITLE     Prediction of the coding sequences of mouse homologues of KIAA
            gene: III. the complete nucleotide sequences of 500 mouse
            KIAA-homologous cDNAs identified by screening of terminal sequences
            of cDNA clones randomly sampled from size-fractionated libraries
  JOURNAL   DNA Res 10 (4), 167-180 (2003)
   PUBMED   14621295
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            AL603714.11.
            
            On Sep 11, 2019 this sequence version replaced XM_006521441.4.
            
            Transcript Variant: Variants 1, 3, 4 and 5 encode the same isoform
            (1).
            
            Sequence Note: he RefSeq transcript and protein were derived from
            genomic sequence to make the sequence consistent with the reference
            genome assembly. The genomic coordinates used for the transcript
            record were based on alignments.
            
            ##Evidence-Data-START##
            Transcript exon combination :: SRR7652917.981724.1,
                                           SRR7974084.20683.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMN01164131, SAMN01164138
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            CDS uses downstream in-frame AUG :: upstream AUG and CDS extension
                                                is not conserved
            RefSeq Select criteria           :: based on conservation,
                                                expression
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-213               AL603714.11        102795-103007       c
            214-309             AL603714.11        76570-76665         c
            310-523             AL603714.11        73533-73746         c
            524-841             AL603714.11        62879-63196         c
            842-6031            AL603714.11        35636-40825         c
FEATURES             Location/Qualifiers
     source          1..6031
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6"
                     /db_xref="taxon:10090"
                     /chromosome="15"
                     /map="15 39.78 cM"
     gene            1..6031
                     /gene="Shisal1"
                     /gene_synonym="1810041L15Rik; Kiaa1644"
                     /note="shisa like 1"
                     /db_xref="GeneID:72301"
                     /db_xref="MGI:MGI:1919551"
     exon            1..213
                     /gene="Shisal1"
                     /gene_synonym="1810041L15Rik; Kiaa1644"
                     /inference="alignment:Splign:2.1.0"
     exon            214..309
                     /gene="Shisal1"
                     /gene_synonym="1810041L15Rik; Kiaa1644"
                     /inference="alignment:Splign:2.1.0"
     CDS             246..842
                     /gene="Shisal1"
                     /gene_synonym="1810041L15Rik; Kiaa1644"
                     /note="isoform 1 precursor is encoded by transcript
                     variant 3; protein shisa-like-1"
                     /codon_start=1
                     /product="protein shisa-like-1 isoform 1 precursor"
                     /protein_id="NP_001361091.1"
                     /db_xref="GeneID:72301"
                     /db_xref="MGI:MGI:1919551"
                     /translation="MTSCGQRSRNVLAVFSLLFPAVLSAHFRVCEPYTDHKGRYHFGF
                     HCPRLSDNKTFVLCCHHNNTVFKYCCNETEFQAVMQANLTAGPEGYMHNNYTALLGVW
                     IYGFFVLTLLVLDLLYYSAMNYDICKVYLTRWGIQGRWMKQDPRRWGNPARAPRPGQP
                     APQPQPPPGTLPQAPQAVHTLRGDTHSPPLMTFQSSSA"
     exon            310..523
                     /gene="Shisal1"
                     /gene_synonym="1810041L15Rik; Kiaa1644"
                     /inference="alignment:Splign:2.1.0"
     exon            524..841
                     /gene="Shisal1"
                     /gene_synonym="1810041L15Rik; Kiaa1644"
                     /inference="alignment:Splign:2.1.0"
     exon            842..6031
                     /gene="Shisal1"
                     /gene_synonym="1810041L15Rik; Kiaa1644"
                     /inference="alignment:Splign:2.1.0"
     regulatory      6010..6015
                     /regulatory_class="polyA_signal_sequence"
                     /gene="Shisal1"
                     /gene_synonym="1810041L15Rik; Kiaa1644"
                     /note="hexamer: AATAAA"
     polyA_site      6031
                     /gene="Shisal1"
                     /gene_synonym="1810041L15Rik; Kiaa1644"
                     /note="major polyA site"
ORIGIN      
        1 agcagagggc gcggcggccg agctgaacgc ggcgcgggac gcgcgtgggg cgcagcgggc
       61 ggagcgcggc cggagccccg gagccccacg cgcccgcagc ctggcggaca actgttgcgg
      121 cggcgcgcgt gggcagcccc gcgcccctgc aggcggctcc cgcgggcgcc ggctccgggc
      181 tacatagcga ggagcgaccg gcgcgggcac gaggcagcgc cggacgggtc aatgccagcc
      241 ggatgatgac cagttgtggc cagcggtccc ggaacgtgct cgcagtattc tccctgttgt
      301 ttcctgcagt cctgtccgca catttccggg tctgtgagcc ttacacggat cacaaaggcc
      361 gctaccactt tggcttccac tgcccccggc tctcggacaa caaaaccttc gtcctctgct
      421 gtcaccataa caacactgtc ttcaaatact gctgcaacga gacggagttc caggcggtca
      481 tgcaggcaaa cctcacggcc ggccccgagg gctacatgca caacaactac acggcgcttc
      541 tgggagtgtg gatttacggc ttcttcgtgc tcacgctgct ggtcctggat ctgctctatt
      601 attccgccat gaactacgat atttgcaagg tttacctcac tcggtggggg atccagggac
      661 ggtggatgaa acaggacccc cggcggtggg ggaaccctgc tcgagcccct cggccaggac
      721 agccggcccc acagccgcag cctccccctg gtaccctgcc gcaagccccc caggctgtgc
      781 acacactgcg gggagacacg cacagcccac ccctgatgac cttccagagc tcatccgcct
      841 gaaaaccctt ttgctgtgcc tcaggatgga ggaggctaga cccagagcac ctggtgcagc
      901 ctccaagagc agcttcaacc aagacaccgg ggagagctgg ggcagcggcg tggtaacgaa
      961 agaggaagta ccacctgtgc ccagaacccc cttccgtgaa cttctgagat taggagcaaa
     1021 ctcagggtcc ggggacaggg tgcaggaaag gggctctgag ccacctgtct gcaagcaata
     1081 gttctctctg gggctggtgg cttctgagaa gagactccgt gtggattgag gtgaccaaca
     1141 ctaagctgct ctggctgatc ccagccagag ggatttgggg ccatgagttg taccatggtc
     1201 caaaacactg acgtttcccc tgcctccatc ccctccaata gcggccccct taggcctatc
     1261 cgtgtcggaa tattgaactt gagtgtgtgc gcgcacgtgt gtgatcaggg tgtttctata
     1321 tgttcagtca gttagcttgt cattgagccc cattgccact ggctgcaggt tctccgatga
     1381 gcacaagttg ctgtgtggct gaggagtctt gcccgtgtcc tcgtttgagg ctcaggcctc
     1441 ttgctgtggc caacaactgt gaaccagtgg agtcggtagg cacagtgcct aaccttcctg
     1501 tccatgccgc aagcagtggg ggactggagc gtaccagtga caggtggttc tggtggaatc
     1561 tgttcccatg gcagctgtat tgaggaagca tcttaactgg ctgtgtgcgg cctaggttgg
     1621 atgtgttgtt gtgtgcacca tcacagcccc taggaggtgg gggtgctaat gtcattggaa
     1681 agagtgcagc ttggtgaagg gtgccacatt tatatggcag gaagtgatca actccatagt
     1741 ttggccccag agtgacaaga acccaagccc aagttttgat tcccagggtg taacaggctc
     1801 tataacccag gtcccccagt gtggtcactg gagcaggtgc ctgacatttt cacagtgagt
     1861 gcagcacctc cccagctcag gtcctccact gtctttgcct gagctcactc tggccatggg
     1921 cctgctgtgc accaggccag gcagtggtaa ggtccagagg tgggtgggag ctgccacacc
     1981 tcgaacggag gaaacacagc cacaacgatg ggtcctatgg aaacccagaa cagagggttc
     2041 tatgaatctg tccacttaca atgggggttt ccaagtaagc ctgggtgcct gtaacatctg
     2101 cccaaagagg ttatctctgc cccaaaaccc actgcctgtg gcacccaaaa ggaaggacat
     2161 cccccagaag tgaccctgtc aatctccaga ggtcacattg gcaatgtaga cagggccatc
     2221 tcacccctat gaaggaggcc aaactgtccc tccctgccct cagcctgtga cccattcttc
     2281 ctgaagctgc atccttcctt gatcagtgct gtccccacac ggttggtggt cttccctccc
     2341 cacactgcgg agaacaatag gcaaaggcag caaggaagga agggccagcg tggaggtgtt
     2401 catgaagacc acaaaggtct atcatggagg ccgagtgggg cttgggtggt cagagatgtt
     2461 taagccgggg tctaaacagg atctagctaa gaggagtgaa cctgggaaag ttgcagccaa
     2521 tctagaggtt cctgcctgcc aggttcctaa aagtaaacaa tccagggtgg ccaggagcag
     2581 cagaggtgaa gggatggatc cacctgcggg tctctgtggt taccgtagtg attctctgca
     2641 gtcaccataa gggcgtctac acagtgtgtc accactgaca gtgctgggtt ctaggacata
     2701 aaactctttc cactctggca ggttcttcat tcttcaaccc acatgaggga gggatggccc
     2761 catttgtagg cacggaagct gtcactctga cggctctaga ggcctattga gcctgctggc
     2821 ctctgtctct gcacccagtc catttctctc agacacactg ctgggttctg cacacaccca
     2881 ggagagcctc tgcatccatc ttgattaaag atgggtgtgg atcctctccc acatcctagg
     2941 gtgtggggca gccattgccc tggagggttc ttagcagtgg actggctgca tcaggtcaca
     3001 cttaacgcct caagagagag cttctgtagg gaagaggatt cgggggctat taagatagag
     3061 attctgatag cacctgagca aagtgatcac aggccctcct gcctcagttt ccccagtact
     3121 gagaggaagg agcccaacca gatgttgagg agacttctgg tttggggtgg ctctgggtaa
     3181 cactctcgaa gctgcttgca cagggctcag agctacttcc tctgtgaagc ctccttcctc
     3241 agacacagga agggtcatgg ccatgcagac agcaggatac tgggtgtgtg tgtggggggg
     3301 tggaggtccc catcagaggc ctcttagggg ataatagctg aaggtcccca tgaagtttct
     3361 gcctgggatc tgctgggatg catctctcat gtgtgtgtct gaggctaaga atctagacac
     3421 tgtccaggac acaggagtac ccccatcccc agaggacaac atagcctttg acttagcagg
     3481 ccctggggac cctgctccct cccagctggg ttgaccctgg ctcccccacc acccatcctc
     3541 tctgattctc ctctcttcag ttggcaaaca ggggttagag gtcaaggttt tacccaatgc
     3601 tgcctccgga gatattactg gaggcaagag ctgtgtccat gtgggtatga gcgcccgggt
     3661 gggttgcagg accccaggtg gccatgatga aaatctgtcc cttgcccatg gtatctatgg
     3721 gtaacagata tgccaatgag tagcatgtcc taaaaggata cagagtagag acaaggtccc
     3781 gaacagttgt tgagctgtgt tgctgctaaa cttccccact gctgtctcct ccagctgcgt
     3841 ctgtcctctt cttcccatga gcctcaggct acagacagta catgctggca gcaacaagta
     3901 gccacaggaa gcagagaagc tgcagacatg gtgtgcccat ggaggggcat ggaatgtctt
     3961 cctgtctgcc tggctttttc ccagtgggaa ctctatgtcc ctcgtgatca gtgttacgcc
     4021 ctgtcatctg tgagctctgg aacctccatt cagaactcct ccctggttgg ctgtactcac
     4081 caaggaaatg gcttgctcat cccgtgtggg agtggccaag catctgacgg tgactgtgac
     4141 catgcgcaac aggccttaat ccaaatagaa gcgagtgcat gtgcacacac acacacacac
     4201 acacacacac acacacaaac gtgtacaccc aggaaacaca catgtataca cacacatata
     4261 catgcaccca cacatgtgaa cataacttat acttgttcat gtgtgcacgt atatacgcac
     4321 acctgtgagt gtaatttgca catgttcagt aatgaacact tgtgaacata catatgtata
     4381 ctgagaacag atataagcac tcaagtatac atgcataccc acgaatacta catgctcatg
     4441 ttcacacatg tccaaaaata cattcacatg cgtacacacg taccctcatg tgaacacaca
     4501 catacatgat ctgcaagaga cagtgagaag atcctcgggc ttccagacat ttcttagagg
     4561 cttgttttaa tttttccatc tggctgctca gttcccacta acaggagttt cttgggaggt
     4621 aaacatgaga gtccctaggg attcaggcac aggtgacaac ctgtgcaacc tcctgagcat
     4681 ttcctgtgtg tgtaaagggc gtggagccgg cacaccgtct gccagggagc tttgctggga
     4741 cagcggcagc cttgggtgag tcacacggct caccatgtgt gttccagtgt ctgcctggtc
     4801 agaccagagg accgtgaaga aatgatgtcc tggggcaaag gtggtgttct gtacccttag
     4861 aaaaatgcag cttcatgcct accgtgtgtc agtaccacca tggtttcctg ccccttccgc
     4921 agcctcaaca acgtgcctgt acttcatggc tgtggttgga atgattaaca gcacagtccc
     4981 acccccacgc tgctcaaatc ctcatctgcc cagcagacac ttgctgagca gctccagctg
     5041 cccctgctgt gtcatgggcg ctcacctgaa gttactcctg tgcagacaca ggtgttgtat
     5101 cacaaaacaa gcagcagtcc cctgacaggc cggtggtcta ccactgctga cctgactctg
     5161 tgcctaacag aaacactctc accccccaaa aaaaaaaaaa aaaaaacaca gaacatttct
     5221 ctgtccctcc cacaaaagtg accttggagg tggcgttgcc tgtcccactc caccctgttt
     5281 ccagtccaga ctcctgccag gtagttggtg ctagaaatgc ttgatttaaa ccgtgagtca
     5341 gtcattcggg tggttaacac tcctatcttt acatcaaagc cctaacccgt ttacccttga
     5401 caaactagac ctgccctcta aaacatacag agtccccttg cagttagcat caactgtaaa
     5461 ttaagcacgg ggccagcagc tagagtcaca gggccaccat ggcctcccat taagttacag
     5521 ctagttacct gactagtgag aacttttagg cctgtgtctc agtttctcac attcagtctc
     5581 ttcccatttc cccccacccc cactgtctgt gttcaagcga gggggaaatg tccccgtctg
     5641 atgtccacag atgaacatat gggcaagttg caataaccaa caaagctgca gggtcagagt
     5701 ccggccactc tagagaggca ggaggccttc ctgcaaagga cttgttcctc cctgagtccg
     5761 tgggacaaag caggtagaca ggatggagca ggaaggtatc tctatgctag aaatgccagg
     5821 atcatgttga aaaggcatgg ggcgtcttct ctcagagccc acgaccagga aaacccccca
     5881 aaaaaaggaa actggtatca atattctgcc ccttcctaat ccgatgtaat aacggtgtgt
     5941 gtgacactgc gctgtcttgc tgcgtttgtc tttctataga gtggttttta taacgacgtc
     6001 cttagtttta ataaaggatt aatcaagtca a
//
