LOCUS       NM_001410665            1662 bp    mRNA    linear   ROD 13-JUN-2024
DEFINITION  Mus musculus src homology 2 domain-containing transforming protein
            D (Shd), transcript variant 3, mRNA.
ACCESSION   NM_001410665
VERSION     NM_001410665.1
KEYWORDS    RefSeq.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE   1  (bases 1 to 1662)
  AUTHORS   Chern,T., Achilleos,A., Tong,X., Hill,M.C., Saltzman,A.B.,
            Reineke,L.C., Chaudhury,A., Dasgupta,S.K., Redhead,Y., Watkins,D.,
            Neilson,J.R., Thiagarajan,P., Green,J.B.A., Malovannaya,A.,
            Martin,J.F., Rosenblatt,D.S. and Poche,R.A.
  TITLE     Mutations in Hcfc1 and Ronin result in an inborn error of cobalamin
            metabolism and ribosomopathy
  JOURNAL   Nat Commun 13 (1), 134 (2022)
   PUBMED   35013307
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1662)
  AUTHORS   Ritter,N., Ali,T., Kopitchinski,N., Schuster,P., Beisaw,A.,
            Hendrix,D.A., Schulz,M.H., Muller-McNicoll,M., Dimmeler,S. and
            Grote,P.
  TITLE     The lncRNA Locus Handsdown Regulates Cardiac Gene Programs and Is
            Essential for Early Mouse Development
  JOURNAL   Dev Cell 50 (5), 644-657 (2019)
   PUBMED   31422919
REFERENCE   3  (bases 1 to 1662)
  AUTHORS   Oda,T., Kujovich,J., Reis,M., Newman,B. and Druker,B.J.
  TITLE     Identification and characterization of two novel SH2
            domain-containing proteins from a yeast two hybrid screen with the
            ABL tyrosine kinase
  JOURNAL   Oncogene 15 (11), 1255-1262 (1997)
   PUBMED   9315092
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            AC154235.2 and CT009719.10.
            
            ##Evidence-Data-START##
            Transcript exon combination :: SRR17784643.369867.1,
                                           SRR7345562.1668874.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMN00849385, SAMN01164131
                                           [ECO:0000348]
            ##Evidence-Data-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-343               AC154235.2         210281-210623
            344-690             AC154235.2         210860-211206
            691-799             AC154235.2         212274-212382
            800-976             AC154235.2         212466-212642
            977-1085            AC154235.2         213377-213485
            1086-1205           AC154235.2         213723-213842
            1206-1662           CT009719.10        20352-20808
FEATURES             Location/Qualifiers
     source          1..1662
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6"
                     /db_xref="taxon:10090"
                     /chromosome="17"
                     /map="17 29.09 cM"
     gene            1..1662
                     /gene="Shd"
                     /note="src homology 2 domain-containing transforming
                     protein D"
                     /db_xref="GeneID:20420"
                     /db_xref="MGI:MGI:1099461"
     exon            1..343
                     /gene="Shd"
                     /inference="alignment:Splign:2.1.0"
     exon            344..690
                     /gene="Shd"
                     /inference="alignment:Splign:2.1.0"
     exon            691..799
                     /gene="Shd"
                     /inference="alignment:Splign:2.1.0"
     exon            800..976
                     /gene="Shd"
                     /inference="alignment:Splign:2.1.0"
     exon            977..1085
                     /gene="Shd"
                     /inference="alignment:Splign:2.1.0"
     exon            1086..1205
                     /gene="Shd"
                     /inference="alignment:Splign:2.1.0"
     exon            1206..1662
                     /gene="Shd"
                     /inference="alignment:Splign:2.1.0"
     regulatory      1635..1640
                     /regulatory_class="polyA_signal_sequence"
                     /gene="Shd"
                     /note="hexamer: AATAAA"
     regulatory      1644..1649
                     /regulatory_class="polyA_signal_sequence"
                     /gene="Shd"
                     /note="hexamer: AATAAA"
     polyA_site      1655
                     /gene="Shd"
                     /note="major polyA site"
     polyA_site      1662
                     /gene="Shd"
                     /note="major polyA site"
ORIGIN      
        1 ccttttgttg tgcagtggcg gcggctgcag gcggttaagg gataggggag gttaagggat
       61 tgagggggcg gtgtggagca ggagttaggg gaccgggagg ttaaaggaaa tggaggggtc
      121 tggagattaa ggaatactgg agatggaatt aaaggattca gagattaagg gatggagata
      181 aaggattgga ggtgtgacgg gggcggggtg tgaaggatca ggggtcaaga aatctgggta
      241 attcggactg gtggggctcg cgggatcgga cagcagcccc acagggagta cgaccctctg
      301 gagtggctca gcctctgaca actttatgca tggagctgaa gggccccagg acgagctgca
      361 gagctaggca tgaaggtcct tgtttgacac cagcatattt tgggggcacc aatggccaag
      421 tggctccgag actatctgaa cttgggcagc cggaggccgc ctccgcagcc gcccaccccc
      481 gactacaccg agagcgacat cctgcgggcc taccgcgaac agaaggacct ggacttcgag
      541 gacccctatg aggattccaa tggccgcgct gagccagagg tcaccgggtc cggtgacccc
      601 aagtacaact ctcctaggca ccggctgatc aaggtggagg ctgcagacat ggccagagcc
      661 aaggctctgc tggggagccc gggggaagag cagccggaag cagaaactga gtactcagac
      721 ccttttgatg cccagcctca gccaccagcc cccaacagtg ggtacatgga gccctatgat
      781 gcccggagcg tctccagtga acagccaagc agagctgtcc agctttacga tactccatat
      841 gaggagcagg ctacgaaacc agaagatgga gggtcttcgg gccagagccg gaggcccctg
      901 gaggatgaga ggccagcaga tgaatacgac cagccttggg agtggaagaa ggatcacatc
      961 tccagggctt tcgcagtgca atttgatggt cctgactggg aacggactcc atgctccacc
     1021 aaggagccct ggagaccaca gcctgcggag cgtgtggata cagcccttgc cctggagaag
     1081 cagccgtggt ttcacggccc cctgagccga gcagaggccg agaaccttct gtccctctgc
     1141 aaggaaggca gctacctcgt tcggctcagc gagaccaggg ctcaggactg cattctgtct
     1201 ctcagaagca accagggttc catgcacctg aaattcgcaa ggacccggga gaaccaggtg
     1261 gtactgggac agcacagtgg gcccttcccc agcatacctg agctggtcct gcattacagt
     1321 gcccgcccac tgcccgtgca aggggcagag cacctggccc tgctctatcc tgtcaccagc
     1381 agccagagct ctcaaggacc ctgcacattg gctgctaagc cagagagggg acaaggggac
     1441 ccatgacgca cagacttcct ttaatgccct ctagtggggt gctccagatc atggcctgcg
     1501 ggcatgcttg acaggtgaag aaaggcggct gccgccaggc ctgctgggct caaccctggg
     1561 aatccacacg gtggcagccg agagctgcaa gtcgttctct gatttacaaa caagtcacac
     1621 accataaatt aataaataaa tgtaataaaa attaatctta aa
//
