LOCUS       NM_024480               3024 bp    mRNA    linear   ROD 01-JUN-2024
DEFINITION  Mus musculus SH3 binding domain protein 5 like (Sh3bp5l),
            transcript variant 2, mRNA.
ACCESSION   NM_024480 XM_986333
VERSION     NM_024480.5
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE   1  (bases 1 to 3024)
  AUTHORS   Bedogni,F. and Hevner,R.F.
  TITLE     Cell-Type-Specific Gene Expression in Developing Mouse Neocortex:
            Intermediate Progenitors Implicated in Axon Development
  JOURNAL   Front Mol Neurosci 14, 686034 (2021)
   PUBMED   34321999
  REMARK    Publication Status: Online-Only
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            BY125606.1, AK159202.1, AK167203.1, BC094418.1 and AI505691.1.
            
            On Apr 28, 2015 this sequence version replaced NM_024480.4.
            
            Transcript Variant: This variant (2) differs in the 5' UTR compared
            to variant 3. Variants 1-3 encode the same isoform (1).
            
            ##Evidence-Data-START##
            Transcript exon combination :: AK159202.1, AK144928.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMN00849374, SAMN00849375
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression,
                                      longest protein
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-11                BY125606.1         1-11
            12-304              AK159202.1         2-294
            305-1441            AK167203.1         379-1515
            1442-3019           BC094418.1         1424-3001
            3020-3024           AI505691.1         1-5                 c
FEATURES             Location/Qualifiers
     source          1..3024
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6"
                     /db_xref="taxon:10090"
                     /chromosome="11"
                     /map="11 36.19 cM"
     gene            1..3024
                     /gene="Sh3bp5l"
                     /gene_synonym="2310074E09Rik; mKIAA1720"
                     /note="SH3 binding domain protein 5 like"
                     /db_xref="GeneID:79566"
                     /db_xref="MGI:MGI:1933124"
     exon            1..86
                     /gene="Sh3bp5l"
                     /gene_synonym="2310074E09Rik; mKIAA1720"
                     /inference="alignment:Splign:2.1.0"
     exon            87..696
                     /gene="Sh3bp5l"
                     /gene_synonym="2310074E09Rik; mKIAA1720"
                     /inference="alignment:Splign:2.1.0"
     CDS             514..1692
                     /gene="Sh3bp5l"
                     /gene_synonym="2310074E09Rik; mKIAA1720"
                     /note="isoform 1 is encoded by transcript variant 2; SH3
                     domain-binding protein 5-like; SH3BP-5-like"
                     /codon_start=1
                     /product="SH3 domain-binding protein 5-like isoform 1"
                     /protein_id="NP_077800.3"
                     /db_xref="CCDS:CCDS24728.1"
                     /db_xref="GeneID:79566"
                     /db_xref="MGI:MGI:1933124"
                     /translation="MADLKKAAGGRETPQGELRSEVVEDEGPRSPVAEEPGGSGSNSS
                     ETKLSPREEEELDPRIQEELEHLNQASEEINQVELQLDEARTTYRRILQESARKLNTQ
                     GSHLGSCIEKARPYYEARRLAKEAQQETQKAALRYERAVSMHNAAREMVFVAEQGVMA
                     DKNRLDPTWQEMLNHATCKVNEAEEERLRGEREHQRVTRLCQQAEARVQALQKTLRRA
                     IGKSRPYFELKAQFSQILEEHKAKVTELEQQVAQAKTRYSVALRNLEQISEQIHARRR
                     GLPPHPLGPRRSSPVGAEAGPEGIEDGDSGIEGAEGGGLEEGSSLGPGPGPDTDTLSL
                     LSLRTVASDLQKCDSVEHLRGLSDHASLDGQELGAQSRGRRGSDIGVRGGRHQRSVSL
                     "
     exon            697..759
                     /gene="Sh3bp5l"
                     /gene_synonym="2310074E09Rik; mKIAA1720"
                     /inference="alignment:Splign:2.1.0"
     exon            760..888
                     /gene="Sh3bp5l"
                     /gene_synonym="2310074E09Rik; mKIAA1720"
                     /inference="alignment:Splign:2.1.0"
     exon            889..1050
                     /gene="Sh3bp5l"
                     /gene_synonym="2310074E09Rik; mKIAA1720"
                     /inference="alignment:Splign:2.1.0"
     exon            1051..1224
                     /gene="Sh3bp5l"
                     /gene_synonym="2310074E09Rik; mKIAA1720"
                     /inference="alignment:Splign:2.1.0"
     exon            1225..3023
                     /gene="Sh3bp5l"
                     /gene_synonym="2310074E09Rik; mKIAA1720"
                     /inference="alignment:Splign:2.1.0"
     regulatory      2999..3004
                     /regulatory_class="polyA_signal_sequence"
                     /gene="Sh3bp5l"
                     /gene_synonym="2310074E09Rik; mKIAA1720"
                     /note="hexamer: AATAAA"
     polyA_site      3019
                     /gene="Sh3bp5l"
                     /gene_synonym="2310074E09Rik; mKIAA1720"
                     /note="major polyA site"
ORIGIN      
        1 tctgccaggg cgtttttggt tggacggtct tgttgcggag ggagggggaa gattgtttgc
       61 tccgtagacg ctccccgtaa agcaagctcc ccagaggcgc atctcccacc ctctgcttgg
      121 acttagcttt ctctccatct gccaccacag cctggaggcg cttgcctcca ccctcccgaa
      181 tggtgctcct cttcccaggc gtcggcccag gatccaggcc ccctttgctc cttgagttgg
      241 agctgttgcc gctggggtct cttggtgggc tccccgtggt gaggtgtgaa gaacttttgc
      301 acagacgaag ctttagttat aaggacctcc tcagcagttc gaagctcagc ctctaactga
      361 acgcgaggcc catctgtgct gcttctcttc ggcctttgag aagagaaagc cctattctgt
      421 tccatccaaa gtccaggaag cctcaaactg gggccctgct cccagcatgc cagccctctc
      481 ttgtgcatag ggctttgccc tcttccagcc agcatggctg atctcaaaaa ggctgcaggg
      541 ggccgggaga ctccgcaggg ggaacttcgg tcagaggtgg tagaggatga gggccctagg
      601 agcccggtcg cagaggagcc tggaggaagt ggaagcaaca gcagtgagac caaattgtcc
      661 cctagagagg aggaggaact ggatcctagg atacaggagg agctggaaca tctgaaccag
      721 gccagtgagg aaatcaacca ggtggagcta cagctagacg aggccaggac cacctatcgg
      781 aggatcctgc aggagtcagc caggaagctt aacacacagg gctctcactt ggggagctgt
      841 attgagaagg cccggcccta ctatgaggct cgacgactgg ctaaggaggc ccagcaggag
      901 acacagaagg cggccttgcg gtatgagcgg gctgtgagca tgcacaatgc cgcccgggag
      961 atggtctttg tggctgagca gggggtcatg gctgacaaaa atcgactgga ccctacctgg
     1021 caggagatgc tcaaccatgc tacctgtaag gtgaacgagg cagaggaaga gcggcttcga
     1081 ggtgaacggg agcatcagcg tgtgacgagg ctgtgccagc aggctgaagc tcgggtccag
     1141 gccctgcaga agaccctccg gcgggccatt ggcaagagcc gcccctactt tgagctcaag
     1201 gcccagttca gccaaatcct ggaggagcac aaggccaagg tgacagaact ggagcagcag
     1261 gtggcgcagg ccaagacccg ctactcggtg gccctgcgta atctggagca gatcagtgag
     1321 cagattcatg ccaggcgccg gggtttgccc ccgcaccccc tgggcccacg gcgatcctcc
     1381 cctgttgggg ctgaagctgg acctgagggc attgaggatg gggacagtgg gattgaaggg
     1441 gcagagggcg ggggcctaga ggagggcagc agccttgggc ctggcccagg cccagatacg
     1501 gacacgctaa gcttattgag tctgcgcact gtggcctctg acctgcagaa gtgtgactca
     1561 gtggagcacc tgcgtggcct ctcggaccat gccagtctag atggccaaga gctgggagcc
     1621 cagagccggg gacgccgggg aagtgacatc ggagttcgag ggggtcggca ccagcgcagt
     1681 gtcagcctgt agctctgtgg ccagagctag cttgatttct accatgggca atcagggccc
     1741 acaggccttc cctcctcaag tcctgtctgc cccagatcct ggtctgcagc cttccttggg
     1801 caggatcagc tgtctcagtc ctgtgtcccc agctttctca ccgttccttc tctcaggagg
     1861 cagctctctc tttgccttac ccacctagaa ggcttgctct ctggccctgt ctcttctccc
     1921 cgtgctggca ctcgagtctc tgatgctctc ttgatttcct attctgacct gacttctatc
     1981 tgtctggctt tttccctcag ggaacttggt ctagaagacg caggaggtca tgtgagaaca
     2041 tgagcatcct agcccaagtg gttggacagg ctttcacccg ttgattcctg gccctgtctt
     2101 cccagaaggc gtgccctaga tatgctgctg agtccccggc agcctgtgct cttgtcctgt
     2161 cccagcttgc ctgtgagcaa tgtgtacaat gtccatgtgc ctctggaaga caccaccttc
     2221 tgtcagtgca cctcttgtga ccttagccgc tgtgctgtgt gtccttcatt cagtgtcagg
     2281 tgggggagtt gaaccctgtt atcaacacag gcatttgggc caactccaaa tggcccctgc
     2341 ctgtgtgatg tgtctccagt tgggctgagc ccttacaatt gccaaggtgc tagtgggtcc
     2401 caatggggtc tatgctggag ggttagagat gggagattct caaggctgag accttgccat
     2461 ccctccttct ccatgtgtgg cgctgggctt gctttttctt ggtagaggtt gaactggagc
     2521 ttggcaccct cctacagggt ggcattagag aacttggtgc tcaattgctc tctattgctc
     2581 ttcctcacac cagatggtac ctacgccagg aacctttgga gagcgcttaa gcatgggtgc
     2641 aaagcctcct ttcttttatg agaggaattg acttgaagtg aggggttcca gcctcaaaga
     2701 gcagctctgg gtgctggtgt tcctgggctg tgtgaaggga aaccacacct gatctgggtg
     2761 ccttggagga gttgacctcc tgtcccatca ggaggatgag gagagcgcgt gcccagggct
     2821 gggagaagag tgcccgttgt ctcgcatggg atctcccaat tttcaggttt taggatggtc
     2881 acaatgaaaa cctgtgggtt tgaggtggct gttcaggcag cacagaaacg aggaggacat
     2941 gactgtgcga gtgcatgtgc tggtgcgtgt gggaaagggt cagtcctggt tttatttaaa
     3001 taaaatagtt tatgtaacag tgaa
//
