LOCUS       NM_080559                687 bp    mRNA    linear   ROD 02-MAY-2024
DEFINITION  Mus musculus SH3 domain binding glutamic acid-rich protein-like 3
            (Sh3bgrl3), mRNA.
ACCESSION   NM_080559
VERSION     NM_080559.2
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE   1  (bases 1 to 687)
  AUTHORS   Adams,D.J., Barlas,B., McIntyre,R.E., Salguero,I., van der
            Weyden,L., Barros,A., Vicente,J.R., Karimpour,N., Haider,A.,
            Ranzani,M., Turner,G., Thompson,N.A., Harle,V., Olvera-Leon,R.,
            Robles-Espinoza,C.D., Speak,A.O., Geisler,N., Weninger,W.J.,
            Geyer,S.H., Hewinson,J., Karp,N.A., Fu,B., Yang,F., Kozik,Z.,
            Choudhary,J., Yu,L., van Ruiten,M.S., Rowland,B.D., Lelliott,C.J.,
            Del Castillo Velasco-Herrera,M., Verstraten,R., Bruckner,L.,
            Henssen,A.G., Rooimans,M.A., de Lange,J., Mohun,T.J., Arends,M.J.,
            Kentistou,K.A., Coelho,P.A., Zhao,Y., Zecchini,H., Perry,J.R.B.,
            Jackson,S.P. and Balmus,G.
  CONSRTM   Sanger Mouse Genetics Project
  TITLE     Genetic determinants of micronucleus formation in vivo
  JOURNAL   Nature 627 (8002), 130-136 (2024)
   PUBMED   38355793
REFERENCE   2  (bases 1 to 687)
  AUTHORS   Ingham,N.J., Pearson,S.A., Vancollie,V.E., Rook,V., Lewis,M.A.,
            Chen,J., Buniello,A., Martelletti,E., Preite,L., Lam,C.C.,
            Weiss,F.D., Powis,Z., Suwannarat,P., Lelliott,C.J., Dawson,S.J.,
            White,J.K. and Steel,K.P.
  TITLE     Mouse screen reveals multiple new genes underlying mouse and human
            hearing loss
  JOURNAL   PLoS Biol 17 (4), e3000194 (2019)
   PUBMED   30973865
  REMARK    Publication Status: Online-Only
REFERENCE   3  (bases 1 to 687)
  AUTHORS   Mazzocco,M., Arrigo,P., Egeo,A., Maffei,M., Vergano,A., Di Lisi,R.,
            Ghiotto,F., Ciccone,E., Cinti,R., Ravazzolo,R. and Scartezzini,P.
  TITLE     A novel human homologue of the SH3BGR gene encodes a small protein
            similar to Glutaredoxin 1 of Escherichia coli
  JOURNAL   Biochem Biophys Res Commun 285 (2), 540-545 (2001)
   PUBMED   11444877
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            AL670680.6.
            
            On Feb 1, 2019 this sequence version replaced NM_080559.1.
            
            Sequence Note: The RefSeq transcript and protein were derived from
            genomic sequence to make the sequence consistent with the reference
            genome assembly. The genomic coordinates used for the transcript
            record were based on alignments.
            
            ##Evidence-Data-START##
            Transcript exon combination :: BC008110.1, BY703688.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMN00849375, SAMN00849376
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on single protein-coding transcript
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-118               AL670680.6         149375-149492       c
            119-286             AL670680.6         148677-148844       c
            287-687             AL670680.6         148165-148565       c
FEATURES             Location/Qualifiers
     source          1..687
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6"
                     /db_xref="taxon:10090"
                     /chromosome="4"
                     /map="4 66.5 cM"
     gene            1..687
                     /gene="Sh3bgrl3"
                     /gene_synonym="1110004L05Rik"
                     /note="SH3 domain binding glutamic acid-rich protein-like
                     3"
                     /db_xref="GeneID:73723"
                     /db_xref="MGI:MGI:1920973"
     exon            1..118
                     /gene="Sh3bgrl3"
                     /gene_synonym="1110004L05Rik"
                     /inference="alignment:Splign:2.1.0"
     CDS             71..352
                     /gene="Sh3bgrl3"
                     /gene_synonym="1110004L05Rik"
                     /codon_start=1
                     /product="SH3 domain-binding glutamic acid-rich-like
                     protein 3"
                     /protein_id="NP_542126.1"
                     /db_xref="CCDS:CCDS38910.1"
                     /db_xref="GeneID:73723"
                     /db_xref="MGI:MGI:1920973"
                     /translation="MSGLRVYSTSVTGSREIKSQQSEVTRILDGKRIQYQLVDISQDN
                     ALRDEMRTLAGNPKATPPQIVNGNHYCGDYELFVEAVEQDTLQEFLKLA"
     exon            119..286
                     /gene="Sh3bgrl3"
                     /gene_synonym="1110004L05Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            287..687
                     /gene="Sh3bgrl3"
                     /gene_synonym="1110004L05Rik"
                     /inference="alignment:Splign:2.1.0"
     regulatory      661..666
                     /regulatory_class="polyA_signal_sequence"
                     /gene="Sh3bgrl3"
                     /gene_synonym="1110004L05Rik"
                     /note="hexamer: ATTAAA"
     polyA_site      681
                     /gene="Sh3bgrl3"
                     /gene_synonym="1110004L05Rik"
                     /note="major polyA site"
ORIGIN      
        1 agcgtagttc ctagccgtgc agctgccgct cccaccgtcc ctcagttggt ctgtgtcccc
       61 cgcctgcagc atgagtggcc tgcgcgtcta cagcacgtcg gtcaccggct cccgagaaat
      121 caagtcccag cagagtgagg tgacccgcat cctagatggg aagaggatcc aataccagct
      181 agtggacatc tcccaggaca acgcccttcg agatgagatg cgaaccttgg ctggcaaccc
      241 caaagctacc ccacctcaga ttgtcaacgg gaaccactac tgtggggact atgaactctt
      301 cgtggaggcc gtggagcagg acacactgca ggagttcctg aagctggcct gagtcaggat
      361 ggccaccgat cctatccagc tagctcttca ccaggccttg taaccaactc cttgtcgtcc
      421 taatctgcaa acccagaccc agaccctttc cgcagccgcc tcctcttcct ccagaggcaa
      481 cattccttat tcaccaacta gtctcaaaag attgtcttaa gccctgacga tggctgtccc
      541 cagccacacc ttggggcatc ctctctgcct ggccctgtct gatgagcatt tctgttgctt
      601 ccatcagcca gagctctgcc aaaggccccg catccccatc ctaggagtgc cctagagaca
      661 attaaatgtc cattcctctg gtgctga
//
