LOCUS       NM_172507               3501 bp    mRNA    linear   ROD 02-JUN-2024
DEFINITION  Mus musculus SH3 domain binding glutamic acid-rich protein like 2
            (Sh3bgrl2), mRNA.
ACCESSION   NM_172507
VERSION     NM_172507.5
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE   1  (bases 1 to 3501)
  AUTHORS   Yoon,J., Feng,X., Kim,Y.S., Shin,D.M., Hatzi,K., Wang,H. and
            Morse,H.C. 3rd.
  TITLE     Interferon regulatory factor 8 (IRF8) interacts with the B cell
            lymphoma 6 (BCL6) corepressor BCOR
  JOURNAL   J Biol Chem 289 (49), 34250-34257 (2014)
   PUBMED   25331958
REFERENCE   2  (bases 1 to 3501)
  AUTHORS   Thompson,C.L., Ng,L., Menon,V., Martinez,S., Lee,C.K.,
            Glattfelder,K., Sunkin,S.M., Henry,A., Lau,C., Dang,C.,
            Garcia-Lopez,R., Martinez-Ferre,A., Pombero,A., Rubenstein,J.L.R.,
            Wakeman,W.B., Hohmann,J., Dee,N., Sodt,A.J., Young,R., Smith,K.,
            Nguyen,T.N., Kidney,J., Kuan,L., Jeromin,A., Kaykas,A., Miller,J.,
            Page,D., Orta,G., Bernard,A., Riley,Z., Smith,S., Wohnoutka,P.,
            Hawrylycz,M.J., Puelles,L. and Jones,A.R.
  TITLE     A high-resolution spatiotemporal atlas of gene expression of the
            developing mouse brain
  JOURNAL   Neuron 83 (2), 309-323 (2014)
   PUBMED   24952961
REFERENCE   3  (bases 1 to 3501)
  AUTHORS   Quina,L.A., Wang,S., Ng,L. and Turner,E.E.
  TITLE     Brn3a and Nurr1 mediate a gene regulatory pathway for habenula
            development
  JOURNAL   J Neurosci 29 (45), 14309-14322 (2009)
   PUBMED   19906978
COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
            NCBI review. The reference sequence was derived from AC125106.3 and
            AC113158.3.
            
            On Oct 19, 2007 this sequence version replaced NM_172507.4.
            
            Sequence Note: The RefSeq transcript and protein were derived from
            genomic sequence to make the sequence consistent with the reference
            genome assembly. The genomic coordinates used for the transcript
            record were based on alignments.
            
            ##Evidence-Data-START##
            Transcript exon combination :: AK076202.1, SRR7345562.1786546.1
                                           [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMN00849374, SAMN00849375
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on single protein-coding transcript
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-166               AC125106.3         27608-27773         c
            167-352             AC113158.3         25959-26144
            353-433             AC113158.3         43181-43261
            434-3501            AC113158.3         45748-48815
FEATURES             Location/Qualifiers
     source          1..3501
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6"
                     /db_xref="taxon:10090"
                     /chromosome="9"
                     /map="9 45.49 cM"
     gene            1..3501
                     /gene="Sh3bgrl2"
                     /gene_synonym="A930014C21Rik; B930089I21"
                     /note="SH3 domain binding glutamic acid-rich protein like
                     2"
                     /db_xref="GeneID:212531"
                     /db_xref="MGI:MGI:1915350"
     exon            1..166
                     /gene="Sh3bgrl2"
                     /gene_synonym="A930014C21Rik; B930089I21"
                     /inference="alignment:Splign:2.1.0"
     CDS             122..445
                     /gene="Sh3bgrl2"
                     /gene_synonym="A930014C21Rik; B930089I21"
                     /codon_start=1
                     /product="SH3 domain-binding glutamic acid-rich-like
                     protein 2"
                     /protein_id="NP_766095.1"
                     /db_xref="CCDS:CCDS40708.1"
                     /db_xref="GeneID:212531"
                     /db_xref="MGI:MGI:1915350"
                     /translation="MVVRVFVASCSGFVAIKKKQQDVVRFLEANKIEFEEVDITMSEE
                     QRQWMYKNIPPEKKPAQGNPLPPQIFNGDRYCGDYDSFFESKESNTVFSFLGLKPRPA
                     STAEP"
     exon            167..352
                     /gene="Sh3bgrl2"
                     /gene_synonym="A930014C21Rik; B930089I21"
                     /inference="alignment:Splign:2.1.0"
     exon            353..433
                     /gene="Sh3bgrl2"
                     /gene_synonym="A930014C21Rik; B930089I21"
                     /inference="alignment:Splign:2.1.0"
     exon            434..3501
                     /gene="Sh3bgrl2"
                     /gene_synonym="A930014C21Rik; B930089I21"
                     /inference="alignment:Splign:2.1.0"
     regulatory      3473..3478
                     /regulatory_class="polyA_signal_sequence"
                     /gene="Sh3bgrl2"
                     /gene_synonym="A930014C21Rik; B930089I21"
                     /note="hexamer: AATAAA"
     polyA_site      3501
                     /gene="Sh3bgrl2"
                     /gene_synonym="A930014C21Rik; B930089I21"
                     /note="major polyA site"
ORIGIN      
        1 gcggcgggag ccagacgcgt cgctgcggtc ttctccgacg gtcgcacggg agtcggcagc
       61 tacctcagtc gcgttaaact tctgtgaccg agtcagcggc gatccctgac gcagcgagag
      121 gatggtggtc cgcgtcttcg tcgcctcatg ctcaggcttc gtggcgatca agaagaagca
      181 gcaggatgtg gttcggtttc tggaagccaa caagatagag ttcgaggaag tggacatcac
      241 catgtcggaa gaacagaggc agtggatgta caaaaacatt ccccctgaga agaagcctgc
      301 gcagggcaac cctctgccac ctcagatatt taatggggat cgatactgtg gagactatga
      361 cagttttttt gaatcgaagg aaagcaacac agtcttttca ttcttaggcc tgaagccacg
      421 gccggcatcc acggcggaac cttagaggta aaaagtagaa ggtgatggag ttgcgtttgg
      481 agcaccccct ggtactcagc actcgcctgc ttacctgatg catcactgtg acaaagccac
      541 acacacaatc agtaacttcg tctgacctgg agaaggtgtc tttggaggac atgggaataa
      601 tggggactgc atgattgctc tgagccaatc agttctgtgg tggtggatcc tcttattttc
      661 tgattcgtct gcagttgcct cactcacctg aaagtactct ccccgtgata ggtcaacttc
      721 cttaatgact gacaggtaat tgggcgacac catcagggag aaaacgttga acctgcccta
      781 tgttttatta gaaactggcc ttgcagaaac ccattcctct ctaagctgcc tgcgtcccat
      841 ccttgaaacc attttgccag gatggtaacg tcaattgaat ccaaaagaag aaagcagtgc
      901 cgactgacat tgactctgag ggttcttgtt ggagagtcac aaatgtcact gctctggtac
      961 tttgtaataa cgcctgctgg aagagctgga tgctctcagc tccgttctgt gatggaaacc
     1021 ctcaccccta taaattctcc aggcttctcc aggtgcttcc aaaacctcca ttgcaatatc
     1081 aaatgatcac agccaagtta cagggcagaa aagagttgct gtttttggaa aatgtctctt
     1141 ttatctcttg caagggggaa gtttcactgt atgcataaga ctacttgaga gatatatttt
     1201 aagaagtgca ccggttacat atagtaagtt aatagagttt gctctgtcag tatgcaaagg
     1261 cgttttcagc tcttgtagtt tgcttacaca cacatgcaca tatattttta aatgcagctc
     1321 cccaaagtaa cagctgcttg ttctattttg tgaagggatt atatttttgg aggaagaaaa
     1381 tgcttggtta gatatatttt gtgaaccgtt ggcgccagcc ctgcgaggac atttgcatag
     1441 cacacacagg ttctgcattc agctccagca tactgggaag gaaaaagaga caccacgatg
     1501 gctgcctagt gtcacttccc atgtcacgca cctttgtctc tgacagttga cagtcttagg
     1561 cttttcagaa taacacagac acacattctt gcttgatgta ggagcacgtg tgagatttca
     1621 gagcagccca gacaggaagg ggctgtctag agcatggtcc tcaatggttc ttaagaagca
     1681 aagtccctgc tccctctggg tgaacactgg caaacactga ggttactctc ctgtatcctg
     1741 gcatatttag agttaatctc acacatagaa ataatcttga ataggataaa gggctgactg
     1801 aaatctccac ctagcctgca cgatgctagg cctttcactc tgattctgaa aaggaaatgt
     1861 ttgagaaatt gaaagatcca tcaagcagcc ctctctgcca cctgcacccc aagctttgct
     1921 aaaggtgggc tgttctgcag tcttttttaa atgctgaagc tgagagcttg ttgcagtcct
     1981 gttgcaacaa ggagaaaggc gaacaccttt ctttatgaat ggaccaaatg attgatgcac
     2041 aattttcttc ccagggaaag cttgtcaggt tgtgggcatt agtgggctag ttggtgttaa
     2101 gcccgatcca cgtaaaattc catttgataa atcccaggga gtttccagag ttttgtgtgt
     2161 tgtgttgtgt tttgttttgc tttgtttcca cctccagctg gatattgtgc ttgaatttgt
     2221 gagtcttctg acaagacaca tttctcttta aaatagagtg atttttaaat tgtcttgtga
     2281 aatcaaccca ggttaccttg agccgtttac ttacatcaag tctactcttg ccagtgtgtg
     2341 ccaacaacca gtttggcaaa gtgaaatctt agcatgtttt ggatggtagg agcactaacc
     2401 ttacagtgtt gaggagacaa agaaagctac caagatttgt cacatatctt tttaattgtc
     2461 cataccatac ctactatgac tgtgttagac acaccaccga atagatggtg ttcttagcat
     2521 cactatcata gtttcacatc atttccttgc catggttctt ctagggagca ctggggagtc
     2581 agccaagaaa aatgagatta gaggtagtga cttgttttag tgtccagaag cccagtatgg
     2641 agtggaccac agtccccgga caagtgtgtg tagagcatgc tggctcttgt atgattccca
     2701 gtctgcctgt ctgcctgact tctcttcctt tccctctttc tctttgttgt tgtttgagac
     2761 agtcttgcta cggagaccca ggactcactt ctgcttctgc ctcccaaatg ctaggatcac
     2821 atacttactg aaatcgtgtt cttccaattt cctttaatta gcttgctttt agattggctc
     2881 gccgccatct ctaaagccta ggaaagaagt gcagacttgg ctgtaatgcc agcagctttc
     2941 aggccatagt gtcgacttcc tgcctgcttg tggacaaagg aagtatgctg ctgatgccca
     3001 gacagtgcca tttgaatatt aggtgaccgt gaaacaccat actgccaagt gtctgcaaac
     3061 cagaagacag tttagttcag gaaatatttt gccaaattca ggggctttat taaaatcaaa
     3121 gaggagaaag aggaaatatt ttgtccttag atgctaatat gttttaggct ttctttttct
     3181 gttttataaa gttaacccag tatttacatt tccatattgt gtgaattgaa ccatctaaat
     3241 atatttttct tttgttattg aaaggtacca aaggcttttt atgttttgtt tggtttgttt
     3301 gattttattg tagggtttgt tttttttttt ctagaaatac cttttatata gactagtccc
     3361 caagtgtctg ggtctacttc agtctgtgta attggttttt acctcagttc atttgtattt
     3421 gtctctcaag gcattggtga aatctcagat tttatattct gctttaaagg ggaataaatt
     3481 ccagaaaaca tgcattataa a
//
