LOCUS       NM_029339               1174 bp    mRNA    linear   ROD 04-JUN-2024
DEFINITION  Mus musculus SAGA complex associated factor 29 (Sgf29), mRNA.
ACCESSION   NM_029339 XM_914754
VERSION     NM_029339.3
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE   1  (bases 1 to 1174)
  AUTHORS   Adams,D.J., Barlas,B., McIntyre,R.E., Salguero,I., van der
            Weyden,L., Barros,A., Vicente,J.R., Karimpour,N., Haider,A.,
            Ranzani,M., Turner,G., Thompson,N.A., Harle,V., Olvera-Leon,R.,
            Robles-Espinoza,C.D., Speak,A.O., Geisler,N., Weninger,W.J.,
            Geyer,S.H., Hewinson,J., Karp,N.A., Fu,B., Yang,F., Kozik,Z.,
            Choudhary,J., Yu,L., van Ruiten,M.S., Rowland,B.D., Lelliott,C.J.,
            Del Castillo Velasco-Herrera,M., Verstraten,R., Bruckner,L.,
            Henssen,A.G., Rooimans,M.A., de Lange,J., Mohun,T.J., Arends,M.J.,
            Kentistou,K.A., Coelho,P.A., Zhao,Y., Zecchini,H., Perry,J.R.B.,
            Jackson,S.P. and Balmus,G.
  CONSRTM   Sanger Mouse Genetics Project
  TITLE     Genetic determinants of micronucleus formation in vivo
  JOURNAL   Nature 627 (8002), 130-136 (2024)
   PUBMED   38355793
REFERENCE   2  (bases 1 to 1174)
  AUTHORS   Xiao,Y., Li,J., Liao,X., He,Y., He,T., Yang,C., Jiang,L.,
            Jeon,S.M., Lee,J.H., Chen,Y., Liu,R. and Chen,Q.
  TITLE     RIOX1-demethylated cGAS regulates ionizing radiation-elicited DNA
            repair
  JOURNAL   Bone Res 10 (1), 19 (2022)
   PUBMED   35210392
  REMARK    Publication Status: Online-Only
REFERENCE   3  (bases 1 to 1174)
  AUTHORS   Long,L., Wei,J., Lim,S.A., Raynor,J.L., Shi,H., Connelly,J.P.,
            Wang,H., Guy,C., Xie,B., Chapman,N.M., Fu,G., Wang,Y., Huang,H.,
            Su,W., Saravia,J., Risch,I., Wang,Y.D., Li,Y., Niu,M., Dhungana,Y.,
            Kc,A., Zhou,P., Vogel,P., Yu,J., Pruett-Miller,S.M., Peng,J. and
            Chi,H.
  TITLE     CRISPR screens unveil signal hubs for nutrient licensing of T cell
            immunity
  JOURNAL   Nature 600 (7888), 308-313 (2021)
   PUBMED   34795452
REFERENCE   4  (bases 1 to 1174)
  AUTHORS   Orpinell,M., Fournier,M., Riss,A., Nagy,Z., Krebs,A.R., Frontini,M.
            and Tora,L.
  TITLE     The ATAC acetyl transferase complex controls mitotic progression by
            targeting non-histone substrates
  JOURNAL   EMBO J 29 (14), 2381-2394 (2010)
   PUBMED   20562830
REFERENCE   5  (bases 1 to 1174)
  AUTHORS   Krebs,A.R., Demmers,J., Karmodiya,K., Chang,N.C., Chang,A.C. and
            Tora,L.
  TITLE     ATAC and Mediator coactivators form a stable complex and regulate a
            set of non-coding RNA genes
  JOURNAL   EMBO Rep 11 (7), 541-547 (2010)
   PUBMED   20508642
REFERENCE   6  (bases 1 to 1174)
  AUTHORS   Nagy,Z., Riss,A., Fujiyama,S., Krebs,A., Orpinell,M., Jansen,P.,
            Cohen,A., Stunnenberg,H.G., Kato,S. and Tora,L.
  TITLE     The metazoan ATAC and SAGA coactivator HAT complexes regulate
            different sets of inducible target genes
  JOURNAL   Cell Mol Life Sci 67 (4), 611-628 (2010)
   PUBMED   19936620
REFERENCE   7  (bases 1 to 1174)
  AUTHORS   Nagy,Z., Riss,A., Romier,C., le Guezennec,X., Dongre,A.R.,
            Orpinell,M., Han,J., Stunnenberg,H. and Tora,L.
  TITLE     The human SPT20-containing SAGA complex plays a direct role in the
            regulation of endoplasmic reticulum stress-induced genes
  JOURNAL   Mol Cell Biol 29 (6), 1649-1660 (2009)
   PUBMED   19114550
REFERENCE   8  (bases 1 to 1174)
  AUTHORS   Guelman,S., Kozuka,K., Mao,Y., Pham,V., Solloway,M.J., Wang,J.,
            Wu,J., Lill,J.R. and Zha,J.
  TITLE     The double-histone-acetyltransferase complex ATAC is essential for
            mammalian development
  JOURNAL   Mol Cell Biol 29 (5), 1176-1188 (2009)
   PUBMED   19103755
REFERENCE   9  (bases 1 to 1174)
  AUTHORS   Zhao,Y., Lang,G., Ito,S., Bonnet,J., Metzger,E., Sawatsubashi,S.,
            Suzuki,E., Le Guezennec,X., Stunnenberg,H.G., Krasnov,A.,
            Georgieva,S.G., Schule,R., Takeyama,K., Kato,S., Tora,L. and
            Devys,D.
  TITLE     A TFTC/STAGA module mediates histone H2A and H2B deubiquitination,
            coactivates nuclear receptors, and counteracts heterochromatin
            silencing
  JOURNAL   Mol Cell 29 (1), 92-101 (2008)
   PUBMED   18206972
REFERENCE   10 (bases 1 to 1174)
  AUTHORS   Martinez,E., Palhan,V.B., Tjernberg,A., Lymar,E.S., Gamper,A.M.,
            Kundu,T.K., Chait,B.T. and Roeder,R.G.
  TITLE     Human STAGA complex is a chromatin-acetylating transcription
            coactivator that interacts with pre-mRNA splicing and DNA
            damage-binding factors in vivo
  JOURNAL   Mol Cell Biol 21 (20), 6782-6795 (2001)
   PUBMED   11564863
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            AK139102.1, AK006287.1 and BE685896.1.
            
            On Apr 29, 2009 this sequence version replaced NM_029339.2.
            
            Publication Note:  This RefSeq record includes a subset of the
            publications that are available for this gene. Please see the Gene
            record to access additional publications.
            
            ##Evidence-Data-START##
            Transcript exon combination :: BC026784.1, AK139102.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMN00849374, SAMN00849375
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression,
                                      longest protein
            ##RefSeq-Attributes-END##
            COMPLETENESS: complete on the 3' end.
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-823               AK139102.1         2-824
            824-1165            AK006287.1         734-1075
            1166-1174           BE685896.1         1-9                 c
FEATURES             Location/Qualifiers
     source          1..1174
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6"
                     /db_xref="taxon:10090"
                     /chromosome="7"
                     /map="7 69.23 cM"
     gene            1..1174
                     /gene="Sgf29"
                     /gene_synonym="1700023O11Rik; 9530025I05Rik; Ccdc101"
                     /note="SAGA complex associated factor 29"
                     /db_xref="GeneID:75565"
                     /db_xref="MGI:MGI:1922815"
     exon            1..169
                     /gene="Sgf29"
                     /gene_synonym="1700023O11Rik; 9530025I05Rik; Ccdc101"
                     /inference="alignment:Splign:2.1.0"
     exon            170..266
                     /gene="Sgf29"
                     /gene_synonym="1700023O11Rik; 9530025I05Rik; Ccdc101"
                     /inference="alignment:Splign:2.1.0"
     CDS             192..1073
                     /gene="Sgf29"
                     /gene_synonym="1700023O11Rik; 9530025I05Rik; Ccdc101"
                     /note="SAGA-associated factor 29 homolog; coiled-coil
                     domain-containing protein 101; coiled-coil domain
                     containing 101"
                     /codon_start=1
                     /product="SAGA-associated factor 29"
                     /protein_id="NP_083615.3"
                     /db_xref="CCDS:CCDS21837.1"
                     /db_xref="GeneID:75565"
                     /db_xref="MGI:MGI:1922815"
                     /translation="MALVSADSRIAELLTELHQLIKQTQEERSRSEHNLVNIQKTHER
                     MQTENKISPYYRTKLRGLYTTAKTDAEAECNILRKALDKIAEIKSLLEERRIAAKIAG
                     LYNDSEPPRKTMRRGVLMTLLQQSAMTLPLWIGKPGDKPPPLCGAIPASGDYVAKPGD
                     KVAARVKAVEGDEQWILAEVVSYSHATNKYEVDDIDEEGKERHTLSRRRIIPLPQWKA
                     NPETDPEALFQKEQLVLALYPQTTCFYRALIHTPPQRPQDDYSVLFEDTSYADGYSPP
                     LNVAQRYVVACKEPKKK"
     exon            267..342
                     /gene="Sgf29"
                     /gene_synonym="1700023O11Rik; 9530025I05Rik; Ccdc101"
                     /inference="alignment:Splign:2.1.0"
     exon            343..415
                     /gene="Sgf29"
                     /gene_synonym="1700023O11Rik; 9530025I05Rik; Ccdc101"
                     /inference="alignment:Splign:2.1.0"
     exon            416..480
                     /gene="Sgf29"
                     /gene_synonym="1700023O11Rik; 9530025I05Rik; Ccdc101"
                     /inference="alignment:Splign:2.1.0"
     exon            481..610
                     /gene="Sgf29"
                     /gene_synonym="1700023O11Rik; 9530025I05Rik; Ccdc101"
                     /inference="alignment:Splign:2.1.0"
     exon            611..757
                     /gene="Sgf29"
                     /gene_synonym="1700023O11Rik; 9530025I05Rik; Ccdc101"
                     /inference="alignment:Splign:2.1.0"
     exon            758..793
                     /gene="Sgf29"
                     /gene_synonym="1700023O11Rik; 9530025I05Rik; Ccdc101"
                     /inference="alignment:Splign:2.1.0"
     exon            794..956
                     /gene="Sgf29"
                     /gene_synonym="1700023O11Rik; 9530025I05Rik; Ccdc101"
                     /inference="alignment:Splign:2.1.0"
     exon            957..1166
                     /gene="Sgf29"
                     /gene_synonym="1700023O11Rik; 9530025I05Rik; Ccdc101"
                     /inference="alignment:Splign:2.1.0"
     regulatory      1146..1151
                     /regulatory_class="polyA_signal_sequence"
                     /gene="Sgf29"
                     /gene_synonym="1700023O11Rik; 9530025I05Rik; Ccdc101"
                     /note="hexamer: AATAAA"
     polyA_site      1166
                     /gene="Sgf29"
                     /gene_synonym="1700023O11Rik; 9530025I05Rik; Ccdc101"
                     /note="major polyA site"
ORIGIN      
        1 gtcctccgcg ctcgaccgcg ctcataagag aaacagcgtg tgtggttctt gacgcgccgc
       61 gaaccttcga acgcaagtgc gagactaccc tgtgaggaaa cgttccaggg attcgcctgt
      121 tcccgccatc gcagttacca gcgcgacgtg ctgtttcttc ctgtgctcga tgcccttccc
      181 aggcccgtcc catggccctt gtgtctgctg attctcgaat tgcagagctt ctcacagagc
      241 tccatcagct gatcaagcaa acccaggaag agcggtcgag aagtgagcac aacttggtga
      301 acatccagaa aacccacgag cggatgcaga cagagaacaa gatttctcct tattaccgga
      361 caaagcttcg aggcctctac acaaccgcca agactgatgc ggaggccgag tgcaacatcc
      421 tccgcaaagc gctggataag atagctgaga tcaagtctct gttggaagag aggcggattg
      481 cggccaagat cgcaggtctc tacaatgact cagagccccc acggaagacc atgcgcagag
      541 gggtgctgat gacactgctg cagcagtccg ccatgaccct gcccctctgg atcgggaaac
      601 ctggtgacaa gcccccaccc ctctgtggag ccattccagc ctcaggggac tatgtggcca
      661 aacctggaga caaggtggct gctagggtga aggctgtgga aggggatgaa cagtggatcc
      721 tagctgaagt agtcagttac agccatgcta ccaacaagta tgaggtagac gacattgatg
      781 aagaaggcaa agagagacac accctgagcc gtcggcgcat catcccactg ccccagtgga
      841 aagctaaccc tgagacagac cctgaggcct tgttccagaa ggagcagctg gtgctggccc
      901 tatatcccca gaccacctgc ttctaccgtg ccctgatcca caccccacca cagaggcctc
      961 aggatgacta ctcagtcctg tttgaagaca cctcttatgc agatggctac tcccctcccc
     1021 tcaatgtggc ccagaggtac gtggtggctt gtaaggagcc caagaaaaag tgaatcgggc
     1081 tggtaggctt gaatctgcca ctgccaacct catgggagaa ggctacaaag gagttcctat
     1141 gatcaaataa atactcttcc ctctcaaaaa aaaa
//
