LOCUS       XM_036164434            4143 bp    mRNA    linear   ROD 07-FEB-2024
DEFINITION  PREDICTED: Mus musculus splicing factor proline/glutamine rich
            (polypyrimidine tract binding protein associated) (Sfpq),
            transcript variant X6, mRNA.
ACCESSION   XM_036164434
VERSION     XM_036164434.1
DBLINK      BioProject: PRJNA169
KEYWORDS    RefSeq.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_000070.7) annotated using gene prediction method: Gnomon,
            supported by mRNA and EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_000001635.27-RS_2024_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.2
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           RefSeqFE; cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/01/2024
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4143
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6J"
                     /db_xref="taxon:10090"
                     /chromosome="4"
     gene            1..4143
                     /gene="Sfpq"
                     /gene_synonym="1110004P21Rik; 2810416M14Rik;
                     5730453G22Rik; 9030402K04Rik; D4Ertd314e; Gm12940; PSF;
                     REP1"
                     /note="splicing factor proline/glutamine rich
                     (polypyrimidine tract binding protein associated); Derived
                     by automated computational analysis using gene prediction
                     method: Gnomon. Supporting evidence includes similarity
                     to: 13 mRNAs, 64 ESTs, 2175 long SRA reads, 11 Proteins,
                     and 98% coverage of the annotated genomic feature by
                     RNAseq alignments, including 16 samples with support for
                     all annotated introns"
                     /db_xref="GeneID:71514"
                     /db_xref="MGI:MGI:1918764"
     CDS             440..2692
                     /gene="Sfpq"
                     /gene_synonym="1110004P21Rik; 2810416M14Rik;
                     5730453G22Rik; 9030402K04Rik; D4Ertd314e; Gm12940; PSF;
                     REP1"
                     /codon_start=1
                     /product="splicing factor, proline- and glutamine-rich
                     isoform X2"
                     /protein_id="XP_036020327.1"
                     /db_xref="GeneID:71514"
                     /db_xref="MGI:MGI:1918764"
                     /translation="MEIPALPTSRLSLGSQLEKLRFHHQVLYLLLAVRAVNLGKAGQA
                     ELSYLRRGQRRRAACVVRHFVLSKVATTFPERLLRFCLDRPLTTAMSRDRFRSRGGGG
                     GGFHRRGGGGGRGGLHDFRSPPPGMGLNQNRGPMGPGPGGPKPPLPPPPPHQQQQQPP
                     PQQPPPQQPPPHQQPPPHQPPHQQPPPPPQESKPVVPQGPGSAPGVSSAPPPAVSAPP
                     ANPPTTGAPPGPGPTPTPPPAVPSTAPGPPPPSTPSSGVSTTPPQTGGPPPPPAGGAG
                     PGPKPGPGPGGPKGGKMPGGPKPGGGPGMGAPGGHPKPPHRGGGEPRGGRQHHAPYHQ
                     QHHQGPPPGGPGPRTEEKISDSEGFKANLSLLRRPGEKTYTQRCRLFVGNLPADITED
                     EFKRLFAKYGEPGEVFINKGKGFGFIKLESRALAEIAKAELDDTPMRGRQLRVRFATH
                     AAALSVRNLSPYVSNELLEEAFSQFGPIERAVVIVDDRGRSTGKGIVEFASKPAARKA
                     FERCSEGVFLLTTTPRPVIVEPLEQLDDEDGLPEKLAQKNPMYQKERETPPRFAQHGT
                     FEYEYSQRWKSLDEMEKQQREQVEKNMKDAKDKLESEMEDAYHEHQANLLRQDLMRRQ
                     EELRRMEELHSQEMQKRKEMQLRQEEERRRREEEMMIRQREMEEQMRRQREESYSRMG
                     YMDPRERDMRMGGGGTMNMGDPYGSGGQKFPPLGGGGGIGYEANPGVPPATMSGSMMG
                     SDMVRMIDVG"
ORIGIN      
        1 tttattacgt ttcatgtagc ccaagctggt tttgaactca atgtaattga taatgtaaag
       61 ataaacttgc agtcctgatt actagtgcct cctcctccca aattttgggc tcacgtgttt
      121 gccaatctgc tagcctttga tagggtttca ataaaagtaa aaccgttgag attaaactct
      181 gtgaaattga ctctaacttc attggcgtag gaataagaga cagcacaagt tcaatttata
      241 accttgaacc cagcgaagat gttagccaag aatagcggac tactcataag aggaaagaaa
      301 atagcctttc agcgctatca ggagctgata gggccctgga tatttaattt cacgcgaaag
      361 ttgcagggca tgcccattca aatttcttcc aacaaatcac aaaggcgtat agacactttc
      421 ttatccgttt attggtcaaa tggaaatccc agccctccct acctcccgcc tctcactagg
      481 gagccaattg gaaaaactta ggtttcatca tcaagtactg tacttgctat tggctgtccg
      541 agctgtcaat ctagggaagg cgggccaggc cgaactgtcc tatttaagaa gaggacaaag
      601 gcggcgcgca gcttgtgtcg tccgccattt tgtgctcagc aaggtggcaa ccacgttccc
      661 tgagcgactt ctccgcttct gcctcgaccg ccccttgact acagctatgt ctcgggatcg
      721 gttccggagt cgcggtggcg gcggtggagg ctttcaccgg cgtggaggag gtggcggccg
      781 cggcggcctt cacgacttcc gctctccgcc gccgggcatg ggcctcaacc agaaccgcgg
      841 ccccatgggc ccgggccctg gcggcccgaa gccgccgctc ccgcctccac ctcctcacca
      901 gcagcagcag cagccgccgc cgcagcagcc tccgccgcag cagccgccgc cgcaccagca
      961 gccgccgccg caccagccgc cccatcaaca gcccccgcct ccgccgcagg aatccaagcc
     1021 cgtcgtcccc caaggccccg gctcggcgcc gggggtgagc agtgcgcctc cgccggcggt
     1081 ctcggctccg cccgccaacc ccccgaccac cggcgcccct ccgggccctg gtccaacccc
     1141 gactccgccg cccgccgtcc cctccaccgc ccccggaccg cctcccccat cgacgccgag
     1201 cagcggagtc tcgaccaccc ctccacagac cggcggccct ccgccaccgc ccgccggggg
     1261 cgccgggccg gggcctaagc cggggccagg ccctggcggt ccaaaaggcg gcaagatgcc
     1321 cggtgggcct aagcctggag gtggcccggg catgggcgct cctggtggcc acccgaagcc
     1381 accacaccga ggtggcggcg agccccgtgg gggccggcag catcatgcgc cctaccacca
     1441 gcagcaccac caggggcccc ctcccggcgg accgggaccg cgcacggagg agaagatctc
     1501 cgactcggag ggatttaaag ccaacttgtc tctcttgcgg aggcctggag aaaaaactta
     1561 cacacagcgc tgtcggttgt ttgtggggaa tctacctgct gatatcacag aggatgaatt
     1621 caaaagactg tttgctaaat acggagaacc cggagaagtt tttatcaaca aaggcaaagg
     1681 gttcgggttc attaagcttg aatctagagc cttggctgaa atcgccaaag ctgagcttga
     1741 tgatactccc atgagaggta gacagcttcg ggttcgattt gccacacacg ctgcagccct
     1801 gtctgttcga aatctctctc cttatgtttc caacgaactt ttggaagagg cctttagcca
     1861 gtttggtcct attgaaaggg ctgttgtaat tgtggatgat cgcggaagat ctacagggaa
     1921 aggcattgtt gagtttgctt ccaagccagc agcaagaaaa gcatttgaaa gatgcagtga
     1981 aggtgttttc ctactgacaa cgactcctcg cccagtcatt gtggaaccac ttgaacagtt
     2041 agatgacgaa gatggtcttc ctgaaaagct ggcccagaag aatccaatgt atcaaaagga
     2101 gagagaaaca ccacctcgtt ttgctcagca tggcacattt gagtatgaat attctcaacg
     2161 atggaagtcc ttggatgaaa tggaaaaaca gcaaagggaa caagttgaaa aaaacatgaa
     2221 ggatgctaaa gacaaattgg aaagtgaaat ggaagatgct taccatgaac accaagcaaa
     2281 tcttttgcgc caagatctga tgagacgcca ggaagaatta aggcgcatgg aggaacttca
     2341 cagtcaagaa atgcagaaac gtaaagaaat gcagttgagg caagaggagg aacggcgtag
     2401 acgagaggaa gagatgatga ttcgccaacg tgagatggaa gaacaaatga gacgccaacg
     2461 agaagaaagt tacagcagga tgggctacat ggatccaaga gaaagagaca tgagaatggg
     2521 tggtggtgga acaatgaaca tgggagatcc ctatggttca ggaggccaga aatttccacc
     2581 actaggtggt ggtggtggca taggttatga agctaatcct ggagttccac cagcaaccat
     2641 gagtggttcc atgatgggaa gcgacatggt aagaatgatt gatgttggct gattttggag
     2701 tcttatttac ttgaggcgga attagatgtt ctcaagacag cacacaacat gggtcagcta
     2761 aaaaggaaag ccacaaatta cttagactga caaagactct aggatcaagt gagctgtatc
     2821 agaaaatgag tcaagacgaa agaggaatga atttgacatt aataaagtgc ctcatctgac
     2881 catcttatcc ttggcactcc agttatactt tctcttgcac tcaacaggaa gccacattta
     2941 caagtcaact gaaggtggta agccttggag gcacagcagc accacttatt tcatgtatat
     3001 aagtacattg taggtgtatt cagacacact tgactttaca gatggttgtg agccactatg
     3061 tggttgctgg gacttgaact cagaacctca ggacagtgtt cctagctgct gaaccatctc
     3121 tccagctgtg gtttctattg gaataaaaca gctaaaagca gcttggggag gaaagtttat
     3181 ttctaggttg cagttttgca gcacaatcca tcatataaag aacccggtag gaatcaaaac
     3241 tgaagaaacc aggaagcagt agctgatgtg gaggccatgg ggggcttgtt tctggcatac
     3301 tcagccagtt ttatagtacc caggaccatc agccagggat ggcacctccc aaagtgagtg
     3361 gcgcccttga acatcagtca gaacgcactt cggattgctt gacaggcaat ctggttggca
     3421 gcattttctt tgttcattat catttttatt ttattttatt ttattttatt tttttttgag
     3481 acagggtttc tctgtagccc tggctgtcct ggaactccgt agaccaggct gaaatctgcc
     3541 tgcctccaag ttctgtcttc acaaaattgt taactgtgtt ttagttccta taatcaagaa
     3601 gaactggcaa tggttttgag attcatttac ccaactagcc aaggctgaag gctggccttg
     3661 cacatgttct catcctttga aacagatgtg tcttgtttcc tttgaggctg gtaagacagg
     3721 aagactgaag tatgttctat tttgaagctc tgataatggt gagggagaac ttaggtcttt
     3781 ctcatttaaa tttttcattt tgtttgtgtg tctgtgtact gtagttatgt catctgccac
     3841 atgtgggtgc tagaaatcaa agagcaacaa atgctttttt ttcatacaga tattttgaca
     3901 atttgaattc ttatattttt aaaatattat ttaccttaca tcctgatctc atctcccctt
     3961 cctcctttcc ttccagaccc gtgcccaccc accttctcca atctccccca cccttttcag
     4021 aggagggagc cctgtcacca cccccactac cacccatggt accaatccat ggcacatcaa
     4081 gtctaaggac taagtcaggc taagctcatc ctctccaatt gaggccagac atggcagccc
     4141 agc
//
