LOCUS       NM_175102                750 bp    mRNA    linear   ROD 03-JUN-2024
DEFINITION  Mus musculus splicing factor 3b, subunit 5 (Sf3b5), mRNA.
ACCESSION   NM_175102
VERSION     NM_175102.4
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE   1  (bases 1 to 750)
  AUTHORS   Nagy,Z., Riss,A., Romier,C., le Guezennec,X., Dongre,A.R.,
            Orpinell,M., Han,J., Stunnenberg,H. and Tora,L.
  TITLE     The human SPT20-containing SAGA complex plays a direct role in the
            regulation of endoplasmic reticulum stress-induced genes
  JOURNAL   Mol Cell Biol 29 (6), 1649-1660 (2009)
   PUBMED   19114550
REFERENCE   2  (bases 1 to 750)
  AUTHORS   Tamplin,O.J., Kinzel,D., Cox,B.J., Bell,C.E., Rossant,J. and
            Lickert,H.
  TITLE     Microarray analysis of Foxa2 mutant mouse embryos reveals novel
            gene expression and inductive roles for the gastrula organizer and
            its derivatives
  JOURNAL   BMC Genomics 9, 511 (2008)
   PUBMED   18973680
  REMARK    Publication Status: Online-Only
REFERENCE   3  (bases 1 to 750)
  AUTHORS   Zhao,Y., Lang,G., Ito,S., Bonnet,J., Metzger,E., Sawatsubashi,S.,
            Suzuki,E., Le Guezennec,X., Stunnenberg,H.G., Krasnov,A.,
            Georgieva,S.G., Schule,R., Takeyama,K., Kato,S., Tora,L. and
            Devys,D.
  TITLE     A TFTC/STAGA module mediates histone H2A and H2B deubiquitination,
            coactivates nuclear receptors, and counteracts heterochromatin
            silencing
  JOURNAL   Mol Cell 29 (1), 92-101 (2008)
   PUBMED   18206972
REFERENCE   4  (bases 1 to 750)
  AUTHORS   Martinez,E., Palhan,V.B., Tjernberg,A., Lymar,E.S., Gamper,A.M.,
            Kundu,T.K., Chait,B.T. and Roeder,R.G.
  TITLE     Human STAGA complex is a chromatin-acetylating transcription
            coactivator that interacts with pre-mRNA splicing and DNA
            damage-binding factors in vivo
  JOURNAL   Mol Cell Biol 21 (20), 6782-6795 (2001)
   PUBMED   11564863
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            BB652104.1 and AI849573.1.
            
            On Jun 19, 2009 this sequence version replaced NM_175102.3.
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on single protein-coding transcript
            ##RefSeq-Attributes-END##
            COMPLETENESS: complete on the 3' end.
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-545               BB652104.1         1-545
            546-750             AI849573.1         1-205               c
FEATURES             Location/Qualifiers
     source          1..750
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6"
                     /db_xref="taxon:10090"
                     /chromosome="10"
                     /map="10 4.72 cM"
     gene            1..750
                     /gene="Sf3b5"
                     /gene_synonym="10kDa; 1110005L13Rik; Sf3b10"
                     /note="splicing factor 3b, subunit 5"
                     /db_xref="GeneID:66125"
                     /db_xref="MGI:MGI:1913375"
     exon            1..734
                     /gene="Sf3b5"
                     /gene_synonym="10kDa; 1110005L13Rik; Sf3b10"
                     /inference="alignment:Splign:2.1.0"
     CDS             174..434
                     /gene="Sf3b5"
                     /gene_synonym="10kDa; 1110005L13Rik; Sf3b10"
                     /note="pre-mRNA-splicing factor SF3b 10 kDa subunit"
                     /codon_start=1
                     /product="splicing factor 3B subunit 5"
                     /protein_id="NP_780311.2"
                     /db_xref="CCDS:CCDS35843.1"
                     /db_xref="GeneID:66125"
                     /db_xref="MGI:MGI:1913375"
                     /translation="MTDRYTIHSQLEHLQSKYIGTGHADTTKWEWLVNQHRDSYCSYM
                     GHFDLLNYFAIAENESKARVRFNLMEKMLQPSGPPADKPEEN"
     regulatory      712..717
                     /regulatory_class="polyA_signal_sequence"
                     /gene="Sf3b5"
                     /gene_synonym="10kDa; 1110005L13Rik; Sf3b10"
                     /note="hexamer: TATAAA"
     polyA_site      734
                     /gene="Sf3b5"
                     /gene_synonym="10kDa; 1110005L13Rik; Sf3b10"
                     /note="major polyA site"
ORIGIN      
        1 gaaaagactg tctactcctg cgtctcggtg gcgtctttct cccgcgcctg cacgaactga
       61 ggttttgcgt ggcggcggcg gcaccggcag cggcagcgtc tctcacttga acgccgcgag
      121 cggcagcttc tcgtctgtgt cctgacctcg gagcctacga gcagagcggc gcgatgacgg
      181 accggtacac catccacagc cagctggagc atctgcagtc caagtacatc ggcacgggcc
      241 acgccgacac caccaagtgg gaatggctgg tgaaccagca ccgcgactcc tactgctcct
      301 acatgggcca cttcgacctc ctcaactact tcgccattgc cgagaacgag agcaaagccc
      361 gcgtgcggtt caacctgatg gagaaaatgc tgcagcccag cgggccgccc gcggacaagc
      421 ccgaggagaa ctgaggtgag cgctgcccag tcttccccgt gtgccggctg cgagcctcct
      481 tgctcctgca tctcgaccat tccgtgttgg ctgtgtcgcc tgacctgcgt acctgtggag
      541 gattcggaac aagtcatgga gagactgtcc gggtccgctc cttgtgaact gtgcagaagg
      601 agtgatccca gcatcggcaa gcgagggaga agactgcacg agagtgatgc gcatttcgag
      661 tctgcttttc gatagttgat gtcttcttgc ctttttaaaa aaccatatat atataaagtt
      721 tagggtttgc tctaaaaaaa aaaaaaaaaa
//
