LOCUS       NM_177854               3086 bp    mRNA    linear   ROD 06-JUN-2024
DEFINITION  Mus musculus serine rich and transmembrane domain containing 1
            (Sertm1), mRNA.
ACCESSION   NM_177854
VERSION     NM_177854.4
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE   1  (bases 1 to 3086)
  AUTHORS   Boyle,M.P., Bernard,A., Thompson,C.L., Ng,L., Boe,A., Mortrud,M.,
            Hawrylycz,M.J., Jones,A.R., Hevner,R.F. and Lein,E.S.
  TITLE     Cell-type-specific consequences of Reelin deficiency in the mouse
            neocortex, hippocampus, and amygdala
  JOURNAL   J Comp Neurol 519 (11), 2061-2089 (2011)
   PUBMED   21491433
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            AC142452.5.
            
            On Jun 19, 2009 this sequence version replaced NM_177854.3.
            
            Sequence Note: The RefSeq transcript and protein were derived from
            genomic sequence to make the sequence consistent with the reference
            genome assembly. The genomic coordinates used for the transcript
            record were based on alignments.
            
            ##Evidence-Data-START##
            Transcript exon combination :: AK031306.1, SRR11927932.1956429.1
                                           [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMN00849377, SAMN00849378
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on single protein-coding transcript
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-151               AC142452.5         125032-125182       c
            152-316             AC142452.5         124402-124566       c
            317-3086            AC142452.5         106363-109132       c
FEATURES             Location/Qualifiers
     source          1..3086
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6"
                     /db_xref="taxon:10090"
                     /chromosome="3"
                     /map="3 25.9 cM"
     gene            1..3086
                     /gene="Sertm1"
                     /gene_synonym="6030405A18Rik"
                     /note="serine rich and transmembrane domain containing 1"
                     /db_xref="GeneID:329641"
                     /db_xref="MGI:MGI:3607715"
     exon            1..151
                     /gene="Sertm1"
                     /gene_synonym="6030405A18Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            152..316
                     /gene="Sertm1"
                     /gene_synonym="6030405A18Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            317..3086
                     /gene="Sertm1"
                     /gene_synonym="6030405A18Rik"
                     /inference="alignment:Splign:2.1.0"
     regulatory      2075..2080
                     /regulatory_class="polyA_signal_sequence"
                     /gene="Sertm1"
                     /gene_synonym="6030405A18Rik"
                     /note="hexamer: AATAAA"
     polyA_site      2096
                     /gene="Sertm1"
                     /gene_synonym="6030405A18Rik"
     regulatory      3062..3067
                     /regulatory_class="polyA_signal_sequence"
                     /gene="Sertm1"
                     /gene_synonym="6030405A18Rik"
                     /note="hexamer: AATAAA"
     polyA_site      3086
                     /gene="Sertm1"
                     /gene_synonym="6030405A18Rik"
                     /note="major polyA site"
ORIGIN      
        1 gggtgcccac tcccattgcg ctcgccgctc gtgcgctctg ctctcgctcc gcgcccccgc
       61 gaggtgcatt ccctaggatc gtcgtggggc gcacgtcgtc aagacagggc cgctgcccca
      121 ccccagcgcc ggagtccaga tctgcacatc aggtcatctg cttttcctgg ggagtcgcca
      181 caggcacatt gacggctggc gtttctctgt cctgtattcc cttgagtctc ctcgcctggc
      241 tgcgaattcg gataagttct tcccgctgaa ctcttgggtt ccccagcgga gctttcttag
      301 ctccccccaa aaccggtctc cgtggacaag tgatccctgc tgttgctgcc tttgtttaaa
      361 aaccaagacg gtttgttgtg ctgacatcct agcctgtgat tgctgctgct gctgctgtca
      421 tgatcgagca atgtcagttt cgccactctt aagccctgtg tgaaccgcgg actccggacg
      481 cggacgcgaa cacggactgg acgcggacca acgtttgagc gtgcctgctc acacctcccc
      541 tcttcgtaga gatgtcggag gctgactcat catctggatt tgccggaagt gtggagaatg
      601 gaactttcct ggagctgttt cccacatcgc tgtccacgtc ggtggactcg tcctcgggcc
      661 acctgtccaa cgtctacatc tatgtctcca tattcctcag cctcctggct ttcctgcttc
      721 tgctgctgat cattgctctt cagaggctga agaacatcat ctcttccagc tcctcgtacc
      781 cggagtatcc tagtgacgct gggagttctt tcaccaacct agaggtgtgt agtatctcct
      841 ctcagaggtc gacgttttca aacctctcat cctgaaggaa atattccaaa tgagaatggc
      901 tttggtttct ccgtactgga ggtattgctt catgaaagaa atgagcatca gggcagacct
      961 gttttcctcc ttcgttttta aatttctttt ctcctgagta tatgcttctt ttgtgaagag
     1021 aggagccatg ctggtggaaa tgcaggtaaa ctttgaggca tgggattcca cacaaagttc
     1081 atgggtcacc tgaagcctgc tcagcactgt gttgggcacc acggactcag actacagggg
     1141 agactgggaa gagacacttc caccctgact ctcttacaaa agaccgggca ctggagacga
     1201 gcagaaactg gaaagccaag tagagactgt ttagaagata ttttctgtat ttaaaagata
     1261 aagcagagac gggggggggg gggggggggg gagggagagg gagaaggaga gggaaaagag
     1321 agagagaaat tatatttaac atataacatt tccaaaggga ggttaaaatt ggctaaatgt
     1381 ttttatttaa tttcacctta gcaaatgtca cgcatgatga ggactgttcc aggggcgtgg
     1441 aaagctttgg cgacacaagg aaagtgtgtc atgaggcagt tggccctgct ttctgctcct
     1501 gggtttcctc ctggcttgtg ttgcagccag attgctctcc ggctatggaa tcctttgtga
     1561 cggtcactgt tgctattact aagtgaagcc cagaagaggc ccaattcatt ttaatttcct
     1621 cactatggtt tccatccagt gggaattaaa tataaagaca tattcgttga gttgcatttt
     1681 atacagtgat attcctagca ctcgtgtgct ccttcatttc catcctttaa agctttgctg
     1741 cacaataaca tggcctctaa ggtgtcagtg tgtgctcatg tgatttctcg atccttaggg
     1801 acaatgtcgc taatagtcgt gtcatcctcc acacacgggg cctgtctctg atgacttgtt
     1861 catgttgaca taatgctctg gttttctaag cggtgagttt atgctaaaac tgcagacatt
     1921 gcaattgggt agctgcagac actgggcgct gctatcctga ggccacccac gggtgtccat
     1981 gagatgaggc acagctgtga gcacaaggct gtgcagggaa ttgatcagag ccaatgacag
     2041 cttgtatgga tacgaattta aaatcaatgt gtaaaataaa tggtccacag actgaactct
     2101 gagctgggta acctgagtgc cgccgagcca acatacaggt ctttcttagg caaagtagtt
     2161 attccctgct cacaaaatgt gataatctca aacactgtaa ctcccacaca taaacacacc
     2221 cagcggatag gttgtgcagt caggacaccc tggggactgg aatgggagaa agagtgaaac
     2281 attttccagg ccctgcctga catcctagac acgctgaggg tttaaagtgg tcaagactat
     2341 caaaggctgc ttccttcttt tttctcctca gtcagatcgg gacacactta gctacttaca
     2401 tttccaaagt atctacagac accatcagac cagtgcagat gctgccctac aacgtgtagt
     2461 gaaaaatctt gtgtcagctg tcatgtaacg tgtgacttaa tacatattaa aatcttggac
     2521 tggagaggtt ctgcagtttg ggtgcaaact gccattctct gagtgcacat tctctctgtg
     2581 ggcacatgga tgcgtgtaaa tacgtacacg cggtgtgtgc acagacacgt ggatgcgtgc
     2641 acaggttttc agggaaacgt tgtgggacag ctatcaggaa ttcagaagca tctgcaatgt
     2701 cacttatgct cttctgatca ttttggttct ttgggtaaag agattctaac aaataaaagg
     2761 acaaacatcc cgaatgacaa gtcaacctcg tcaggtcccg tcctgcagag gtaacttcat
     2821 attcttttct cctggaatag attcaaagac tttagacagc aaaactaccg aagtcaaact
     2881 cacttgcctc tctgcaggtg cgctgcctaa ctagccacat cgattcttgt gcctggagat
     2941 aggcggagca attagtagca gaactcaccg gtggaaaaga ggcatcgcca ctaagcattg
     3001 tagaacttgg gaggaatctg tcttgtggaa atgttcagag agactggaat acaggtatac
     3061 aaataaagaa gtggagtctg ttgaaa
//
