LOCUS       XM_036162978            3756 bp    mRNA    linear   ROD 07-FEB-2024
DEFINITION  PREDICTED: Mus musculus sema domain, transmembrane domain (TM), and
            cytoplasmic domain, (semaphorin) 6C (Sema6c), transcript variant
            X19, mRNA.
ACCESSION   XM_036162978
VERSION     XM_036162978.1
DBLINK      BioProject: PRJNA169
KEYWORDS    RefSeq.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_000069.7) annotated using gene prediction method: Gnomon,
            supported by mRNA and EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Mar 20, 2024 this sequence was replaced by
            NM_001428696.1.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_000001635.27-RS_2024_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.2
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           RefSeqFE; cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/01/2024
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3756
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6J"
                     /db_xref="taxon:10090"
                     /chromosome="3"
     gene            1..3756
                     /gene="Sema6c"
                     /gene_synonym="mKIAA1869; Semay"
                     /note="sema domain, transmembrane domain (TM), and
                     cytoplasmic domain, (semaphorin) 6C; Derived by automated
                     computational analysis using gene prediction method:
                     Gnomon. Supporting evidence includes similarity to: 2
                     mRNAs, 16 ESTs, 276 long SRA reads, 1 Protein, and 100%
                     coverage of the annotated genomic feature by RNAseq
                     alignments, including 17 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:20360"
                     /db_xref="MGI:MGI:1338032"
     CDS             326..3019
                     /gene="Sema6c"
                     /gene_synonym="mKIAA1869; Semay"
                     /codon_start=1
                     /product="semaphorin-6C isoform X7"
                     /protein_id="XP_036018871.1"
                     /db_xref="GeneID:20360"
                     /db_xref="MGI:MGI:1338032"
                     /translation="MPRAPHSMPLLLLLLLLSSLPQAQAAFPQDPTPLLTSDLQGASP
                     SSWFRGLEDDAVAAELGLDFQRFLTLNRTLLVAARDHVFSFDLQAQEEGEGLVPNKFL
                     TWRSQDMENCAVRGKLTITSLQQEGEELSGQARCPFDATQSTVAIFAEGSLYSATAAD
                     FQASDAVVYRSLGPQPPLRSAKYDSKWLREPHFVYALEHGEHVYFFFREVSVEDARLG
                     RVQFSRVARVCKRDMGGSPRALDRHWTSFLKLRLNCSVPGDSTFYFDVLQSLTGPVNL
                     HGRSALFGVFTTQTNSIPGSAVCAFYLDDIERGFEGKFKEQRSLDGAWTPVSEDKVPS
                     PRPGSCAGVGAAASFSSSQDLPDDVLLFIKAHPLLDPAVPPATHQPLLTLTSRALLTQ
                     VAVDGMAGPHRNTTVLFLGSNDGTVLKVLPPGGQSLGSEPIVLEEIDAYSHARCSGKR
                     SPRAARRIIGLELDTEGHRLFVAFPGCIVYLSLSRCARHGACQRSCLASLDPYCGWHR
                     SRGCMSIRGPGGTDVDLTGNQESTEHGDCQDGATGSQSGPGDSAYGVRRDLSPASASR
                     SIPIPLLLACVAAAFALGASVSGLLVSCACRRANRRRSKDIETPGLPRPLSLRSLARL
                     HGGGPEPPPPPKDGDAAQTPQLYTTFLPPPDGGSPPELACLPTPETTPELPVKHLRAS
                     GGPWEWNQNGNNASEGPGRPPRGCSGAGGPAPRVLVRPPPPGCPGQAVEVTTLEELLR
                     YLHGPQPPRKGSEPLASAPFTSRPPASEPGASLFVDSSPMPRDGVPPLRLDVPPEGKR
                     AAPSGRPALSAPAPRLGVGGSRRLPFPTHRAPPGLLTRVPSGGPARYSGGPGRHLLYL
                     GRPEGHRGRSLKRVDVKSPLSPKPPLASPPQPAPHGGHFNF"
ORIGIN      
        1 ggaggcgggc ggggcggctg gggccgagcc cagagccccg ggcggtcgca ttgttttcct
       61 ccgccgatct gcggcgggaa taggggctcg tactcggacc cgaggctctt gtaacccgac
      121 agtgccctgg agtctaaatc taagcacgga cgttcgtcac atcttgccga agccccaacc
      181 acggattgcg aactctgcga ggcgcggagc taggggccgc ctgctgctcc ctggaccttg
      241 ctgacccgga tctcggagca agtaccttgg gggccggcac atgggtgagg gggtaccccc
      301 tggggcgtga gctgccccgc acaggatgcc ccgtgccccc cactccatgc ccctgctgct
      361 cctgctgctg ttgctgtcat cgctccccca agcccaggct gcctttcccc aggaccccac
      421 ccctctgttg acctctgacc ttcaaggtgc ctctccatca tcctggttcc ggggcctgga
      481 ggacgatgct gtggctgcgg aacttgggct ggactttcag agattcctga ccttgaaccg
      541 gaccttgctt gtggctgccc gggatcacgt tttctccttc gatcttcaag cccaagaaga
      601 aggggagggg ctggtgccca acaagtttct gacatggagg agtcaagata tggagaactg
      661 tgcagtccgg ggaaagctga cgataacatc tctgcaacag gagggtgagg agctgagtgg
      721 gcaggctcga tgcccctttg atgccaccca gtccactgtg gccatctttg cagagggcag
      781 tttgtactca gccacagcag cagatttcca ggccagtgat gctgtagttt acagaagtct
      841 tggacctcag cctccactcc gttctgcaaa gtatgactcc aagtggcttc gagagccaca
      901 ctttgtctat gcgttggagc atggagagca cgtctacttc ttcttccgag aagtctctgt
      961 ggaggatgcc cgcttaggga gggtgcagtt ttccagggta gcccgggtat gtaaacgtga
     1021 catgggtggc tcacctcggg ccttggatcg ccactggaca tccttcctta agctgaggct
     1081 caactgctct gtccctgggg actctacctt ctactttgac gtcttacagt ccttaactgg
     1141 gcctgtgaac ctgcatggcc gctccgctct ctttggggtc ttcactactc agaccaatag
     1201 cattcctggg tctgcagtct gcgccttcta cctagatgat attgaacgtg gctttgaggg
     1261 caagttcaag gagcagagga gtctggatgg ggcctggact cctgtgtctg aggacaaggt
     1321 cccctcaccc aggccagggt cctgtgcagg tgtgggtgca gctgcctcgt tctcctcctc
     1381 tcaagaccta cctgatgatg tcctgctctt catcaaggca cacccgctgc tggatcctgc
     1441 tgtgccaccc gccacccatc aaccgctcct cactctgact agcagggccc tgctgaccca
     1501 ggtagctgtg gacggaatgg ctggtcccca cagaaatact actgtcctgt ttcttggctc
     1561 caacgatggg acagtgctga aggtgctacc tccagggggt cagtctttgg gctctgagcc
     1621 tatcgtcttg gaagagattg atgcctacag ccatgcccgg tgcagtggga agcggtcacc
     1681 ccgagctgcg cggcggatca tagggctgga gctggacact gagggtcaca ggctttttgt
     1741 ggcctttcct ggatgtatcg tctacctctc tctcagccgg tgtgcccggc atggagcatg
     1801 tcagaggagc tgcctggctt ctctggaccc atactgtgga tggcatcgat ccagaggctg
     1861 catgagtatc aggggacctg gtgggactga tgtcgatctg actgggaacc aggaatccac
     1921 agagcacggt gactgccaag atggagcgac cgggagtcag tctggccctg gagattctgc
     1981 ttatggcgtg cgcagggacc tttccccagc ctcagcctcc cgatccattc ccatcccact
     2041 cctcctggcc tgtgtggccg cggccttcgc tttgggcgcc tcagtctccg gtctcttggt
     2101 gtcctgtgct tgtcgtcgcg cgaaccgccg tcggagcaag gacatcgaga ccccggggct
     2161 gccgcgcccc ctctcccttc gcagcctggc ccggctgcac ggtggcggtc ctgagccccc
     2221 gcctccgccc aaggatggag atgcagcgca aacgccccag ctctacacta ccttcctgcc
     2281 tccgcccgac ggcggatccc caccggagct ggcctgccta cccacgccgg agacgacgcc
     2341 cgagctgccc gtgaagcacc tccgtgcctc cgggggcccc tgggaatgga accagaatgg
     2401 gaacaacgcc tcggagggcc caggccgccc accacggggc tgcagcgggg cgggcgggcc
     2461 cgcaccgcga gtgctggtga ggccaccgcc ccctggctgc cccgggcagg cggtagaggt
     2521 gaccacgctg gaggaactgc tgcgctacct gcacggccct cagccgccca ggaagggtag
     2581 cgaacctctc gcctccgccc cgttcacctc ccggccgccc gcctcggagc ccggcgcctc
     2641 gctgttcgtg gactccagcc cgatgccgcg ggatggcgtt ccgccgctca ggctcgacgt
     2701 gccacccgaa ggcaagcgcg ctgccccgag cgggcggcct gctctctcgg ccccagcccc
     2761 gcgcctgggt gtcggcggca gccgccgatt gccctttccc acacaccggg cgcccccggg
     2821 cctgctcacg cgagtgccct cgggaggccc ggccaggtac tccggggggc ccgggaggca
     2881 cctcctgtac ctgggccggc ccgaaggcca tcgcggccgc tccctgaaga gggtggacgt
     2941 gaagtctccg ctgtcgccca agccgcccct cgcctccccg ccgcagcccg ccccgcacgg
     3001 tggtcatttc aacttctgac ggaagctgct cgcgcccgcc cgtcgaggcg ctggaggccg
     3061 ctggccttcc cggactccga gactctcccg gggccccccc tctcgcctcg gtttatttat
     3121 tgacttgtct ttcccctgtc ctttggcgag gaactcgccc ctcggagcgc cagcatttca
     3181 ggggacctgg ccgactccca ctccccgctc ccttccagcc acgctgcctt aagtcgccgc
     3241 tccggactcc cgcggactga gccccgggcg ggccggccgg ggctggagcc gcgcgctgtg
     3301 tagagtcctc gggcctcccg gggccgggac gtgcctcctc ctactgtgta ggagccccct
     3361 gcttcccaat acagccgtgt ccccaagccg ctgcctgact ttcctcgcgg tgcgggaggg
     3421 gaaggagggc gcggcgcccg gccctctggg taaccgtgct cctgaaagtc ggcctccact
     3481 gcagctcggc ccccaagtct ctccggagca attggcttgg cgggtgtccc accggggtta
     3541 atcaggaaag gtttcctgaa ggaggcaatc aaagacctgg tgtgtgtggg ctgagccggg
     3601 gcccaggaga gcagtgggta ctgattgggg gtgccgggga aggcgctcag cacgtttctg
     3661 gatagaggtc aggcaccttt ccacggccta cactctgggg tgggagaggg aacttttgga
     3721 gaaataaaac gaagctgctg cgtgatttga atttca
//
