LOCUS       XM_030252499            3784 bp    mRNA    linear   ROD 07-FEB-2024
DEFINITION  PREDICTED: Mus musculus sema domain, transmembrane domain (TM), and
            cytoplasmic domain, (semaphorin) 6C (Sema6c), transcript variant
            X29, mRNA.
ACCESSION   XM_030252499
VERSION     XM_030252499.1
DBLINK      BioProject: PRJNA169
KEYWORDS    RefSeq.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_000069.7) annotated using gene prediction method: Gnomon,
            supported by mRNA and EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Mar 20, 2024 this sequence was replaced by
            NR_190461.1.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_000001635.27-RS_2024_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.2
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           RefSeqFE; cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/01/2024
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3784
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6J"
                     /db_xref="taxon:10090"
                     /chromosome="3"
     gene            1..3784
                     /gene="Sema6c"
                     /gene_synonym="mKIAA1869; Semay"
                     /note="sema domain, transmembrane domain (TM), and
                     cytoplasmic domain, (semaphorin) 6C; Derived by automated
                     computational analysis using gene prediction method:
                     Gnomon. Supporting evidence includes similarity to: 2
                     mRNAs, 13 ESTs, 278 long SRA reads, 1 Protein, and 100%
                     coverage of the annotated genomic feature by RNAseq
                     alignments, including 27 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:20360"
                     /db_xref="MGI:MGI:1338032"
     CDS             576..3047
                     /gene="Sema6c"
                     /gene_synonym="mKIAA1869; Semay"
                     /codon_start=1
                     /product="semaphorin-6C isoform X11"
                     /protein_id="XP_030108359.1"
                     /db_xref="GeneID:20360"
                     /db_xref="MGI:MGI:1338032"
                     /translation="MENCAVRGKLTDECYNYIRVLVPWNSQTLLACGTNSFSPMCRSY
                     GITSLQQEGEELSGQARCPFDATQSTVAIFAEGSLYSATAADFQASDAVVYRSLGPQP
                     PLRSAKYDSKWLREPHFVYALEHGEHVYFFFREVSVEDARLGRVQFSRVARVCKRDMG
                     GSPRALDRHWTSFLKLRLNCSVPGDSTFYFDVLQSLTGPVNLHGRSALFGVFTTQTNS
                     IPGSAVCAFYLDDIERGFEGKFKEQRSLDGAWTPVSEDKVPSPRPGSCAGVGAAASFS
                     SSQDLPDDVLLFIKAHPLLDPAVPPATHQPLLTLTSRALLTQVAVDGMAGPHRNTTVL
                     FLGSNDGTVLKVLPPGGQSLGSEPIVLEEIDAYSHARCSGKRSPRAARRIIGLELDTE
                     GHRLFVAFPGCIVYLSLSRCARHGACQRSCLASLDPYCGWHRSRGCMSIRGPGGTDVD
                     LTGNQESTEHGDCQDGATGSQSGPGDSAYGVRRDLSPASASRSIPIPLLLACVAAAFA
                     LGASVSGLLVSCACRRANRRRSKDIETPGLPRPLSLRSLARLHGGGPEPPPPPKDGDA
                     AQTPQLYTTFLPPPDGGSPPELACLPTPETTPELPVKHLRASGGPWEWNQNGNNASEG
                     PGRPPRGCSGAGGPAPRVLVRPPPPGCPGQAVEVTTLEELLRYLHGPQPPRKGSEPLA
                     SAPFTSRPPASEPGASLFVDSSPMPRDGVPPLRLDVPPEGKRAAPSGRPALSAPAPRL
                     GVGGSRRLPFPTHRAPPGLLTRVPSGGPARYSGGPGRHLLYLGRPEGHRGRSLKRVDV
                     KSPLSPKPPLASPPQPAPHGGHFNF"
ORIGIN      
        1 ggaggcgggc ggggcggctg gggccgagcc cagagccccg ggcggtcgca ttgttttcct
       61 ccgccgatct gcggcgggaa taggggctcg tactcggacc cgaggctctt gtaacccgac
      121 agtgccctgg agtctaaatc taagcacgga cgttcgtcac atcttgccga agccccaacc
      181 acggattgcg aactctgcga ggcgcggagc taggggccgc ctgctgctcc ctggaccttg
      241 ctgacccgga tctcggagca aggccggcac atgggtgagg gggtaccccc tggggcgtga
      301 gctgccccgc acaggatgcc ccgtgccccc cactccatgc ccctgctgct cctgctgctg
      361 ttgctgtcat cgctccccca agcccaggct gcctttcccc aggaccccac ccctctgttg
      421 acctctgacc ttcaaggtgc ctctccatca tcctggttcc ggggcctgga ggacgatgct
      481 gtggctgcgg aacttgggct ggactttcag agattcctga ccttgaaccg gaccttgctt
      541 gtggctgccc gtttctgaca tggaggagtc aagatatgga gaactgtgca gtccggggaa
      601 agctgacgga cgaatgctac aactacatcc gtgttcttgt tccctggaac tcgcagacac
      661 ttcttgcctg tggaacaaat tccttcagcc ctatgtgccg cagctatggg ataacatctc
      721 tgcaacagga gggtgaggag ctgagtgggc aggctcgatg cccctttgat gccacccagt
      781 ccactgtggc catctttgca gagggcagtt tgtactcagc cacagcagca gatttccagg
      841 ccagtgatgc tgtagtttac agaagtcttg gacctcagcc tccactccgt tctgcaaagt
      901 atgactccaa gtggcttcga gagccacact ttgtctatgc gttggagcat ggagagcacg
      961 tctacttctt cttccgagaa gtctctgtgg aggatgcccg cttagggagg gtgcagtttt
     1021 ccagggtagc ccgggtatgt aaacgtgaca tgggtggctc acctcgggcc ttggatcgcc
     1081 actggacatc cttccttaag ctgaggctca actgctctgt ccctggggac tctaccttct
     1141 actttgacgt cttacagtcc ttaactgggc ctgtgaacct gcatggccgc tccgctctct
     1201 ttggggtctt cactactcag accaatagca ttcctgggtc tgcagtctgc gccttctacc
     1261 tagatgatat tgaacgtggc tttgagggca agttcaagga gcagaggagt ctggatgggg
     1321 cctggactcc tgtgtctgag gacaaggtcc cctcacccag gccagggtcc tgtgcaggtg
     1381 tgggtgcagc tgcctcgttc tcctcctctc aagacctacc tgatgatgtc ctgctcttca
     1441 tcaaggcaca cccgctgctg gatcctgctg tgccacccgc cacccatcaa ccgctcctca
     1501 ctctgactag cagggccctg ctgacccagg tagctgtgga cggaatggct ggtccccaca
     1561 gaaatactac tgtcctgttt cttggctcca acgatgggac agtgctgaag gtgctacctc
     1621 cagggggtca gtctttgggc tctgagccta tcgtcttgga agagattgat gcctacagcc
     1681 atgcccggtg cagtgggaag cggtcacccc gagctgcgcg gcggatcata gggctggagc
     1741 tggacactga gggtcacagg ctttttgtgg cctttcctgg atgtatcgtc tacctctctc
     1801 tcagccggtg tgcccggcat ggagcatgtc agaggagctg cctggcttct ctggacccat
     1861 actgtggatg gcatcgatcc agaggctgca tgagtatcag gggacctggt gggactgatg
     1921 tcgatctgac tgggaaccag gaatccacag agcacggtga ctgccaagat ggagcgaccg
     1981 ggagtcagtc tggccctgga gattctgctt atggcgtgcg cagggacctt tccccagcct
     2041 cagcctcccg atccattccc atcccactcc tcctggcctg tgtggccgcg gccttcgctt
     2101 tgggcgcctc agtctccggt ctcttggtgt cctgtgcttg tcgtcgcgcg aaccgccgtc
     2161 ggagcaagga catcgagacc ccggggctgc cgcgccccct ctcccttcgc agcctggccc
     2221 ggctgcacgg tggcggtcct gagcccccgc ctccgcccaa ggatggagat gcagcgcaaa
     2281 cgccccagct ctacactacc ttcctgcctc cgcccgacgg cggatcccca ccggagctgg
     2341 cctgcctacc cacgccggag acgacgcccg agctgcccgt gaagcacctc cgtgcctccg
     2401 ggggcccctg ggaatggaac cagaatggga acaacgcctc ggagggccca ggccgcccac
     2461 cacggggctg cagcggggcg ggcgggcccg caccgcgagt gctggtgagg ccaccgcccc
     2521 ctggctgccc cgggcaggcg gtagaggtga ccacgctgga ggaactgctg cgctacctgc
     2581 acggccctca gccgcccagg aagggtagcg aacctctcgc ctccgccccg ttcacctccc
     2641 ggccgcccgc ctcggagccc ggcgcctcgc tgttcgtgga ctccagcccg atgccgcggg
     2701 atggcgttcc gccgctcagg ctcgacgtgc cacccgaagg caagcgcgct gccccgagcg
     2761 ggcggcctgc tctctcggcc ccagccccgc gcctgggtgt cggcggcagc cgccgattgc
     2821 cctttcccac acaccgggcg cccccgggcc tgctcacgcg agtgccctcg ggaggcccgg
     2881 ccaggtactc cggggggccc gggaggcacc tcctgtacct gggccggccc gaaggccatc
     2941 gcggccgctc cctgaagagg gtggacgtga agtctccgct gtcgcccaag ccgcccctcg
     3001 cctccccgcc gcagcccgcc ccgcacggtg gtcatttcaa cttctgacgg aagctgctcg
     3061 cgcccgcccg tcgaggcgct ggaggccgct ggccttcccg gactccgaga ctctcccggg
     3121 gccccccctc tcgcctcggt ttatttattg acttgtcttt cccctgtcct ttggcgagga
     3181 actcgcccct cggagcgcca gcatttcagg ggacctggcc gactcccact ccccgctccc
     3241 ttccagccac gctgccttaa gtcgccgctc cggactcccg cggactgagc cccgggcggg
     3301 ccggccgggg ctggagccgc gcgctgtgta gagtcctcgg gcctcccggg gccgggacgt
     3361 gcctcctcct actgtgtagg agccccctgc ttcccaatac agccgtgtcc ccaagccgct
     3421 gcctgacttt cctcgcggtg cgggagggga aggagggcgc ggcgcccggc cctctgggta
     3481 accgtgctcc tgaaagtcgg cctccactgc agctcggccc ccaagtctct ccggagcaat
     3541 tggcttggcg ggtgtcccac cggggttaat caggaaaggt ttcctgaagg aggcaatcaa
     3601 agacctggtg tgtgtgggct gagccggggc ccaggagagc agtgggtact gattgggggt
     3661 gccggggaag gcgctcagca cgtttctgga tagaggtcag gcacctttcc acggcctaca
     3721 ctctggggtg ggagagggaa cttttggaga aataaaacga agctgctgcg tgatttgaat
     3781 ttca
//
