LOCUS       XM_030252496            3794 bp    mRNA    linear   ROD 07-FEB-2024
DEFINITION  PREDICTED: Mus musculus sema domain, transmembrane domain (TM), and
            cytoplasmic domain, (semaphorin) 6C (Sema6c), transcript variant
            X27, mRNA.
ACCESSION   XM_030252496
VERSION     XM_030252496.1
DBLINK      BioProject: PRJNA169
KEYWORDS    RefSeq.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_000069.7) annotated using gene prediction method: Gnomon,
            supported by mRNA and EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Mar 20, 2024 this sequence was replaced by
            NR_190460.1.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_000001635.27-RS_2024_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.2
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           RefSeqFE; cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/01/2024
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3794
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6J"
                     /db_xref="taxon:10090"
                     /chromosome="3"
     gene            1..3794
                     /gene="Sema6c"
                     /gene_synonym="mKIAA1869; Semay"
                     /note="sema domain, transmembrane domain (TM), and
                     cytoplasmic domain, (semaphorin) 6C; Derived by automated
                     computational analysis using gene prediction method:
                     Gnomon. Supporting evidence includes similarity to: 2
                     mRNAs, 14 ESTs, 281 long SRA reads, 1 Protein, and 100%
                     coverage of the annotated genomic feature by RNAseq
                     alignments, including 30 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:20360"
                     /db_xref="MGI:MGI:1338032"
     CDS             586..3057
                     /gene="Sema6c"
                     /gene_synonym="mKIAA1869; Semay"
                     /codon_start=1
                     /product="semaphorin-6C isoform X11"
                     /protein_id="XP_030108356.1"
                     /db_xref="GeneID:20360"
                     /db_xref="MGI:MGI:1338032"
                     /translation="MENCAVRGKLTDECYNYIRVLVPWNSQTLLACGTNSFSPMCRSY
                     GITSLQQEGEELSGQARCPFDATQSTVAIFAEGSLYSATAADFQASDAVVYRSLGPQP
                     PLRSAKYDSKWLREPHFVYALEHGEHVYFFFREVSVEDARLGRVQFSRVARVCKRDMG
                     GSPRALDRHWTSFLKLRLNCSVPGDSTFYFDVLQSLTGPVNLHGRSALFGVFTTQTNS
                     IPGSAVCAFYLDDIERGFEGKFKEQRSLDGAWTPVSEDKVPSPRPGSCAGVGAAASFS
                     SSQDLPDDVLLFIKAHPLLDPAVPPATHQPLLTLTSRALLTQVAVDGMAGPHRNTTVL
                     FLGSNDGTVLKVLPPGGQSLGSEPIVLEEIDAYSHARCSGKRSPRAARRIIGLELDTE
                     GHRLFVAFPGCIVYLSLSRCARHGACQRSCLASLDPYCGWHRSRGCMSIRGPGGTDVD
                     LTGNQESTEHGDCQDGATGSQSGPGDSAYGVRRDLSPASASRSIPIPLLLACVAAAFA
                     LGASVSGLLVSCACRRANRRRSKDIETPGLPRPLSLRSLARLHGGGPEPPPPPKDGDA
                     AQTPQLYTTFLPPPDGGSPPELACLPTPETTPELPVKHLRASGGPWEWNQNGNNASEG
                     PGRPPRGCSGAGGPAPRVLVRPPPPGCPGQAVEVTTLEELLRYLHGPQPPRKGSEPLA
                     SAPFTSRPPASEPGASLFVDSSPMPRDGVPPLRLDVPPEGKRAAPSGRPALSAPAPRL
                     GVGGSRRLPFPTHRAPPGLLTRVPSGGPARYSGGPGRHLLYLGRPEGHRGRSLKRVDV
                     KSPLSPKPPLASPPQPAPHGGHFNF"
ORIGIN      
        1 ggaggcgggc ggggcggctg gggccgagcc cagagccccg ggcggtcgca ttgttttcct
       61 ccgccgatct gcggcgggaa taggggctcg tactcggacc cgaggctctt gtaacccgac
      121 agtgccctgg agtctaaatc taagcacgga cgttcgtcac atcttgccga agccccaacc
      181 acggattgcg aactctgcga ggcgcggagc taggggccgc ctgctgctcc ctggaccttg
      241 ctgacccgga tctcggagca agtaccttgg gggccggcac atgggtgagg gggtaccccc
      301 tggggcgtga gctgccccgc acaggatgcc ccgtgccccc cactccatgc ccctgctgct
      361 cctgctgctg ttgctgtcat cgctccccca agcccaggct gcctttcccc aggaccccac
      421 ccctctgttg acctctgacc ttcaaggtgc ctctccatca tcctggttcc ggggcctgga
      481 ggacgatgct gtggctgcgg aacttgggct ggactttcag agattcctga ccttgaaccg
      541 gaccttgctt gtggctgccc gtttctgaca tggaggagtc aagatatgga gaactgtgca
      601 gtccggggaa agctgacgga cgaatgctac aactacatcc gtgttcttgt tccctggaac
      661 tcgcagacac ttcttgcctg tggaacaaat tccttcagcc ctatgtgccg cagctatggg
      721 ataacatctc tgcaacagga gggtgaggag ctgagtgggc aggctcgatg cccctttgat
      781 gccacccagt ccactgtggc catctttgca gagggcagtt tgtactcagc cacagcagca
      841 gatttccagg ccagtgatgc tgtagtttac agaagtcttg gacctcagcc tccactccgt
      901 tctgcaaagt atgactccaa gtggcttcga gagccacact ttgtctatgc gttggagcat
      961 ggagagcacg tctacttctt cttccgagaa gtctctgtgg aggatgcccg cttagggagg
     1021 gtgcagtttt ccagggtagc ccgggtatgt aaacgtgaca tgggtggctc acctcgggcc
     1081 ttggatcgcc actggacatc cttccttaag ctgaggctca actgctctgt ccctggggac
     1141 tctaccttct actttgacgt cttacagtcc ttaactgggc ctgtgaacct gcatggccgc
     1201 tccgctctct ttggggtctt cactactcag accaatagca ttcctgggtc tgcagtctgc
     1261 gccttctacc tagatgatat tgaacgtggc tttgagggca agttcaagga gcagaggagt
     1321 ctggatgggg cctggactcc tgtgtctgag gacaaggtcc cctcacccag gccagggtcc
     1381 tgtgcaggtg tgggtgcagc tgcctcgttc tcctcctctc aagacctacc tgatgatgtc
     1441 ctgctcttca tcaaggcaca cccgctgctg gatcctgctg tgccacccgc cacccatcaa
     1501 ccgctcctca ctctgactag cagggccctg ctgacccagg tagctgtgga cggaatggct
     1561 ggtccccaca gaaatactac tgtcctgttt cttggctcca acgatgggac agtgctgaag
     1621 gtgctacctc cagggggtca gtctttgggc tctgagccta tcgtcttgga agagattgat
     1681 gcctacagcc atgcccggtg cagtgggaag cggtcacccc gagctgcgcg gcggatcata
     1741 gggctggagc tggacactga gggtcacagg ctttttgtgg cctttcctgg atgtatcgtc
     1801 tacctctctc tcagccggtg tgcccggcat ggagcatgtc agaggagctg cctggcttct
     1861 ctggacccat actgtggatg gcatcgatcc agaggctgca tgagtatcag gggacctggt
     1921 gggactgatg tcgatctgac tgggaaccag gaatccacag agcacggtga ctgccaagat
     1981 ggagcgaccg ggagtcagtc tggccctgga gattctgctt atggcgtgcg cagggacctt
     2041 tccccagcct cagcctcccg atccattccc atcccactcc tcctggcctg tgtggccgcg
     2101 gccttcgctt tgggcgcctc agtctccggt ctcttggtgt cctgtgcttg tcgtcgcgcg
     2161 aaccgccgtc ggagcaagga catcgagacc ccggggctgc cgcgccccct ctcccttcgc
     2221 agcctggccc ggctgcacgg tggcggtcct gagcccccgc ctccgcccaa ggatggagat
     2281 gcagcgcaaa cgccccagct ctacactacc ttcctgcctc cgcccgacgg cggatcccca
     2341 ccggagctgg cctgcctacc cacgccggag acgacgcccg agctgcccgt gaagcacctc
     2401 cgtgcctccg ggggcccctg ggaatggaac cagaatggga acaacgcctc ggagggccca
     2461 ggccgcccac cacggggctg cagcggggcg ggcgggcccg caccgcgagt gctggtgagg
     2521 ccaccgcccc ctggctgccc cgggcaggcg gtagaggtga ccacgctgga ggaactgctg
     2581 cgctacctgc acggccctca gccgcccagg aagggtagcg aacctctcgc ctccgccccg
     2641 ttcacctccc ggccgcccgc ctcggagccc ggcgcctcgc tgttcgtgga ctccagcccg
     2701 atgccgcggg atggcgttcc gccgctcagg ctcgacgtgc cacccgaagg caagcgcgct
     2761 gccccgagcg ggcggcctgc tctctcggcc ccagccccgc gcctgggtgt cggcggcagc
     2821 cgccgattgc cctttcccac acaccgggcg cccccgggcc tgctcacgcg agtgccctcg
     2881 ggaggcccgg ccaggtactc cggggggccc gggaggcacc tcctgtacct gggccggccc
     2941 gaaggccatc gcggccgctc cctgaagagg gtggacgtga agtctccgct gtcgcccaag
     3001 ccgcccctcg cctccccgcc gcagcccgcc ccgcacggtg gtcatttcaa cttctgacgg
     3061 aagctgctcg cgcccgcccg tcgaggcgct ggaggccgct ggccttcccg gactccgaga
     3121 ctctcccggg gccccccctc tcgcctcggt ttatttattg acttgtcttt cccctgtcct
     3181 ttggcgagga actcgcccct cggagcgcca gcatttcagg ggacctggcc gactcccact
     3241 ccccgctccc ttccagccac gctgccttaa gtcgccgctc cggactcccg cggactgagc
     3301 cccgggcggg ccggccgggg ctggagccgc gcgctgtgta gagtcctcgg gcctcccggg
     3361 gccgggacgt gcctcctcct actgtgtagg agccccctgc ttcccaatac agccgtgtcc
     3421 ccaagccgct gcctgacttt cctcgcggtg cgggagggga aggagggcgc ggcgcccggc
     3481 cctctgggta accgtgctcc tgaaagtcgg cctccactgc agctcggccc ccaagtctct
     3541 ccggagcaat tggcttggcg ggtgtcccac cggggttaat caggaaaggt ttcctgaagg
     3601 aggcaatcaa agacctggtg tgtgtgggct gagccggggc ccaggagagc agtgggtact
     3661 gattgggggt gccggggaag gcgctcagca cgtttctgga tagaggtcag gcacctttcc
     3721 acggcctaca ctctggggtg ggagagggaa cttttggaga aataaaacga agctgctgcg
     3781 tgatttgaat ttca
//
