LOCUS       XM_006501197            4229 bp    mRNA    linear   ROD 07-FEB-2024
DEFINITION  PREDICTED: Mus musculus sema domain, transmembrane domain (TM), and
            cytoplasmic domain, (semaphorin) 6C (Sema6c), transcript variant
            X6, mRNA.
ACCESSION   XM_006501197
VERSION     XM_006501197.4
DBLINK      BioProject: PRJNA169
KEYWORDS    RefSeq.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_000069.7) annotated using gene prediction method: Gnomon,
            supported by mRNA and EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            On Aug 8, 2019 this sequence version replaced XM_006501197.3.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_000001635.27-RS_2024_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.2
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           RefSeqFE; cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/01/2024
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4229
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6J"
                     /db_xref="taxon:10090"
                     /chromosome="3"
     gene            1..4229
                     /gene="Sema6c"
                     /gene_synonym="mKIAA1869; Semay"
                     /note="sema domain, transmembrane domain (TM), and
                     cytoplasmic domain, (semaphorin) 6C; Derived by automated
                     computational analysis using gene prediction method:
                     Gnomon. Supporting evidence includes similarity to: 1
                     mRNA, 17 ESTs, 257 long SRA reads, 7 Proteins, and 100%
                     coverage of the annotated genomic feature by RNAseq
                     alignments, including 20 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:20360"
                     /db_xref="MGI:MGI:1338032"
     CDS             601..3492
                     /gene="Sema6c"
                     /gene_synonym="mKIAA1869; Semay"
                     /codon_start=1
                     /product="semaphorin-6C isoform X1"
                     /protein_id="XP_006501260.1"
                     /db_xref="GeneID:20360"
                     /db_xref="MGI:MGI:1338032"
                     /translation="MPRAPHSMPLLLLLLLLSSLPQAQAAFPQDPTPLLTSDLQGASP
                     SSWFRGLEDDAVAAELGLDFQRFLTLNRTLLVAARDHVFSFDLQAQEEGEGLVPNKFL
                     TWRSQDMENCAVRGKLTDECYNYIRVLVPWNSQTLLACGTNSFSPMCRSYGITSLQQE
                     GEELSGQARCPFDATQSTVAIFAEGSLYSATAADFQASDAVVYRSLGPQPPLRSAKYD
                     SKWLREPHFVYALEHGEHVYFFFREVSVEDARLGRVQFSRVARVCKRDMGGSPRALDR
                     HWTSFLKLRLNCSVPGDSTFYFDVLQSLTGPVNLHGRSALFGVFTTQTNSIPGSAVCA
                     FYLDDIERGFEGKFKEQRSLDGAWTPVSEDKVPSPRPGSCAGVGAAASFSSSQDLPDD
                     VLLFIKAHPLLDPAVPPATHQPLLTLTSRALLTQVAVDGMAGPHRNTTVLFLGSNDGT
                     VLKVLPPGGQSLGSEPIVLEEIDAYSHARCSGKRSPRAARRIIGLELDTEGHRLFVAF
                     PGCIVYLSLSRCARHGACQRSCLASLDPYCGWHRSRGCMSIRGPGGTDVDLTGNQEST
                     EHGDCQDGATGSQSGPGDSAYVLLGPGPSPETPSSPSDAQQGPQSSTLGAHTQGVRRD
                     LSPASASRSIPIPLLLACVAAAFALGASVSGLLVSCACRRANRRRSKDIETPGLPRPL
                     SLRSLARLHGGGPEPPPPPKDGDAAQTPQLYTTFLPPPDGGSPPELACLPTPETTPEL
                     PVKHLRASGGPWEWNQNGNNASEGPGRPPRGCSGAGGPAPRVLVRPPPPGCPGQAVEV
                     TTLEELLRYLHGPQPPRKGSEPLASAPFTSRPPASEPGASLFVDSSPMPRDGVPPLRL
                     DVPPEGKRAAPSGRPALSAPAPRLGVGGSRRLPFPTHRAPPGLLTRVPSGGPARYSGG
                     PGRHLLYLGRPEGHRGRSLKRVDVKSPLSPKPPLASPPQPAPHGGHFNF"
ORIGIN      
        1 gggaggcggg cggggcggct ggggccgagc ccagagcccc gggcggtcgc attgttttcc
       61 tccgccgatc tgcggcggga ataggggctc gtactcggac ccgaggctct tgtaacccga
      121 cagtgccctg gagtctaaat ctaagcacgg acgttcgtca catcttgccg aagccccaac
      181 cacggattgc gaactctgcg aggcgcggag ctaggggccg cctgctgctc cctggacctt
      241 gctgacccgg atctcggagc aaatcagagg gctcctatcc ctcttcatcc ccacaggacc
      301 caccacccca ggcccagagt ctactctaga agacttggaa tggacaacta aggcttgttg
      361 tgatctatca caaaagaaag gactcctagc tccctgacct gattaatgga gtcttttcag
      421 cacctcactt caatcccaag ggaaggcagg aagctgaggc agcctgatga gggaagaagg
      481 ggagagcggg gcacgttcag ccatttcttc tcacccgtcc tttctatcct tcgttcagca
      541 taggggggcc ggcacatggg tgagggggta ccccctgggg cgtgagctgc cccgcacagg
      601 atgccccgtg ccccccactc catgcccctg ctgctcctgc tgctgttgct gtcatcgctc
      661 ccccaagccc aggctgcctt tccccaggac cccacccctc tgttgacctc tgaccttcaa
      721 ggtgcctctc catcatcctg gttccggggc ctggaggacg atgctgtggc tgcggaactt
      781 gggctggact ttcagagatt cctgaccttg aaccggacct tgcttgtggc tgcccgggat
      841 cacgttttct ccttcgatct tcaagcccaa gaagaagggg aggggctggt gcccaacaag
      901 tttctgacat ggaggagtca agatatggag aactgtgcag tccggggaaa gctgacggac
      961 gaatgctaca actacatccg tgttcttgtt ccctggaact cgcagacact tcttgcctgt
     1021 ggaacaaatt ccttcagccc tatgtgccgc agctatggga taacatctct gcaacaggag
     1081 ggtgaggagc tgagtgggca ggctcgatgc ccctttgatg ccacccagtc cactgtggcc
     1141 atctttgcag agggcagttt gtactcagcc acagcagcag atttccaggc cagtgatgct
     1201 gtagtttaca gaagtcttgg acctcagcct ccactccgtt ctgcaaagta tgactccaag
     1261 tggcttcgag agccacactt tgtctatgcg ttggagcatg gagagcacgt ctacttcttc
     1321 ttccgagaag tctctgtgga ggatgcccgc ttagggaggg tgcagttttc cagggtagcc
     1381 cgggtatgta aacgtgacat gggtggctca cctcgggcct tggatcgcca ctggacatcc
     1441 ttccttaagc tgaggctcaa ctgctctgtc cctggggact ctaccttcta ctttgacgtc
     1501 ttacagtcct taactgggcc tgtgaacctg catggccgct ccgctctctt tggggtcttc
     1561 actactcaga ccaatagcat tcctgggtct gcagtctgcg ccttctacct agatgatatt
     1621 gaacgtggct ttgagggcaa gttcaaggag cagaggagtc tggatggggc ctggactcct
     1681 gtgtctgagg acaaggtccc ctcacccagg ccagggtcct gtgcaggtgt gggtgcagct
     1741 gcctcgttct cctcctctca agacctacct gatgatgtcc tgctcttcat caaggcacac
     1801 ccgctgctgg atcctgctgt gccacccgcc acccatcaac cgctcctcac tctgactagc
     1861 agggccctgc tgacccaggt agctgtggac ggaatggctg gtccccacag aaatactact
     1921 gtcctgtttc ttggctccaa cgatgggaca gtgctgaagg tgctacctcc agggggtcag
     1981 tctttgggct ctgagcctat cgtcttggaa gagattgatg cctacagcca tgcccggtgc
     2041 agtgggaagc ggtcaccccg agctgcgcgg cggatcatag ggctggagct ggacactgag
     2101 ggtcacaggc tttttgtggc ctttcctgga tgtatcgtct acctctctct cagccggtgt
     2161 gcccggcatg gagcatgtca gaggagctgc ctggcttctc tggacccata ctgtggatgg
     2221 catcgatcca gaggctgcat gagtatcagg ggacctggtg ggactgatgt cgatctgact
     2281 gggaaccagg aatccacaga gcacggtgac tgccaagatg gagcgaccgg gagtcagtct
     2341 ggccctggag attctgctta tgtgcttctg ggtcctggcc cttcccctga gacccccagt
     2401 tcccccagtg atgcccaaca agggccccag tcttccactc ttggagctca cacacagggc
     2461 gtgcgcaggg acctttcccc agcctcagcc tcccgatcca ttcccatccc actcctcctg
     2521 gcctgtgtgg ccgcggcctt cgctttgggc gcctcagtct ccggtctctt ggtgtcctgt
     2581 gcttgtcgtc gcgcgaaccg ccgtcggagc aaggacatcg agaccccggg gctgccgcgc
     2641 cccctctccc ttcgcagcct ggcccggctg cacggtggcg gtcctgagcc cccgcctccg
     2701 cccaaggatg gagatgcagc gcaaacgccc cagctctaca ctaccttcct gcctccgccc
     2761 gacggcggat ccccaccgga gctggcctgc ctacccacgc cggagacgac gcccgagctg
     2821 cccgtgaagc acctccgtgc ctccgggggc ccctgggaat ggaaccagaa tgggaacaac
     2881 gcctcggagg gcccaggccg cccaccacgg ggctgcagcg gggcgggcgg gcccgcaccg
     2941 cgagtgctgg tgaggccacc gccccctggc tgccccgggc aggcggtaga ggtgaccacg
     3001 ctggaggaac tgctgcgcta cctgcacggc cctcagccgc ccaggaaggg tagcgaacct
     3061 ctcgcctccg ccccgttcac ctcccggccg cccgcctcgg agcccggcgc ctcgctgttc
     3121 gtggactcca gcccgatgcc gcgggatggc gttccgccgc tcaggctcga cgtgccaccc
     3181 gaaggcaagc gcgctgcccc gagcgggcgg cctgctctct cggccccagc cccgcgcctg
     3241 ggtgtcggcg gcagccgccg attgcccttt cccacacacc gggcgccccc gggcctgctc
     3301 acgcgagtgc cctcgggagg cccggccagg tactccgggg ggcccgggag gcacctcctg
     3361 tacctgggcc ggcccgaagg ccatcgcggc cgctccctga agagggtgga cgtgaagtct
     3421 ccgctgtcgc ccaagccgcc cctcgcctcc ccgccgcagc ccgccccgca cggtggtcat
     3481 ttcaacttct gacggaagct gctcgcgccc gcccgtcgag gcgctggagg ccgctggcct
     3541 tcccggactc cgagactctc ccggggcccc ccctctcgcc tcggtttatt tattgacttg
     3601 tctttcccct gtcctttggc gaggaactcg cccctcggag cgccagcatt tcaggggacc
     3661 tggccgactc ccactccccg ctcccttcca gccacgctgc cttaagtcgc cgctccggac
     3721 tcccgcggac tgagccccgg gcgggccggc cggggctgga gccgcgcgct gtgtagagtc
     3781 ctcgggcctc ccggggccgg gacgtgcctc ctcctactgt gtaggagccc cctgcttccc
     3841 aatacagccg tgtccccaag ccgctgcctg actttcctcg cggtgcggga ggggaaggag
     3901 ggcgcggcgc ccggccctct gggtaaccgt gctcctgaaa gtcggcctcc actgcagctc
     3961 ggcccccaag tctctccgga gcaattggct tggcgggtgt cccaccgggg ttaatcagga
     4021 aaggtttcct gaaggaggca atcaaagacc tggtgtgtgt gggctgagcc ggggcccagg
     4081 agagcagtgg gtactgattg ggggtgccgg ggaaggcgct cagcacgttt ctggatagag
     4141 gtcaggcacc tttccacggc ctacactctg gggtgggaga gggaactttt ggagaaataa
     4201 aacgaagctg ctgcgtgatt tgaatttca
//
