LOCUS       XM_036162919            3770 bp    mRNA    linear   ROD 07-FEB-2024
DEFINITION  PREDICTED: Mus musculus sema domain, immunoglobulin domain (Ig),
            transmembrane domain (TM) and short cytoplasmic domain,
            (semaphorin) 4C (Sema4c), transcript variant X11, mRNA.
ACCESSION   XM_036162919
VERSION     XM_036162919.1
DBLINK      BioProject: PRJNA169
KEYWORDS    RefSeq.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_000067.7) annotated using gene prediction method: Gnomon,
            supported by mRNA and EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_000001635.27-RS_2024_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.2
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           RefSeqFE; cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/01/2024
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3770
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6J"
                     /db_xref="taxon:10090"
                     /chromosome="1"
     gene            1..3770
                     /gene="Sema4c"
                     /gene_synonym="M-Sema F; sema I; Semacl1; Semaf; Semai"
                     /note="sema domain, immunoglobulin domain (Ig),
                     transmembrane domain (TM) and short cytoplasmic domain,
                     (semaphorin) 4C; Derived by automated computational
                     analysis using gene prediction method: Gnomon. Supporting
                     evidence includes similarity to: 2 mRNAs, 19 ESTs, 311
                     long SRA reads, and 100% coverage of the annotated genomic
                     feature by RNAseq alignments, including 41 samples with
                     support for all annotated introns"
                     /db_xref="GeneID:20353"
                     /db_xref="MGI:MGI:109252"
     CDS             803..2884
                     /gene="Sema4c"
                     /gene_synonym="M-Sema F; sema I; Semacl1; Semaf; Semai"
                     /codon_start=1
                     /product="semaphorin-4C isoform X3"
                     /protein_id="XP_036018812.1"
                     /db_xref="GeneID:20353"
                     /db_xref="MGI:MGI:109252"
                     /translation="MLTFTLDRAEFEDGKGKCPYDPAKGHTGLLVDGELYSATLNNFL
                     GTEPVILRYMGTHHSIKTEYLAFWLNEPHFVGSAFVPESVGSFTGDDDKIYFFFSERA
                     VEYDCYSEQVVARVARVCKGDMGGARTLQKKWTTFLKARLVCSAPDWKVYFNQLKAVH
                     TLRGASWHNTTFFGVFQARWGDMDLSAVCEYQLEQIQQVFEGPYKEYSEQAQKWARYT
                     DPVPSPRPGSCINNWHRDNGYTSSLELPDNTLNFIKKHPLMEDQVKPRLGRPLLVKKN
                     TNFTHVVADRVPGLDGATYTVLFIGTGDGWLLKAVSLGPWIHMVEELQVFDQEPVESL
                     VLSQSKKVLFAGSRSQLVQLSLADCTKYRFCVDCVLARDPYCAWNVNTSRCVATTSGR
                     SGSFLVQHVANLDTSKMCNQYGIKKVRSIPKNITVVSGTDLVLPCHLSSNLAHAHWTF
                     GSQDLPAEQPGSFLYDTGLQALVVMAAQSRHSGPYRCYSEEQGTRLAAESYLVAVVAG
                     SSVTLEARAPLENLGLVWLAVVALGAVCLVLLLLVLSLRRRLREELEKGAKASERTLV
                     YPLELPKEPASPPFRPGPETDEKLWDPVGYYYSDGSLKIVPGHARCQPGGGPPSPPPG
                     IPGQPLPSPTRLHLGGGRNSNANGYVRLQLGGEDRGGSGHPLPELADELRRKLQQRQP
                     LPDSNPEESSV"
ORIGIN      
        1 aaggcagcgg gtcgcagccc cctcctgggc gggccttcgc gtcccgcccc cggccaccac
       61 tcgacaccct ctgcctgacg tcaaggggtt gggggcggag agcggcggtg gcggcggctg
      121 cagcggagaa agaaccggcg cccggcgcgg tggagcgccg aatccgagct caggggcgcc
      181 gagagccgtg ctgagaccga ggggcggtgg cacgggacag ccttagcgtg ctggcgggcg
      241 ggcgcagtct ggagcggcgc gggggcaggg gaggacggtg gccggagtca aacgcgaggg
      301 cagcgcccag ggattggagc tgcacgaaag agcagggctg ctggactgaa gtttagaccc
      361 tgggtgtctg ccatggcccc acactgggct gtctggctgc tggcagcagg gctgtggggc
      421 ctgggcatcg gggctgagat gtggtggaac cttgtgcccc ggaagacagt atcttctggg
      481 gagctggtca cagtagtgag gcggttctcc cagacaggca tccaggactt cctgacactg
      541 accctgacag aacattctgg ccttttatat gtgggggccc gagaggcgct gtttgccttc
      601 agtgtagagg ctctggagct gcaaggagcg gtgagagatc tcttgggagg ctccagctga
      661 gaagaaaatt gaatgtaccc agaaagggaa gagcaaccag accgaatgct tcaacttcat
      721 ccgcttcctt cagccataca attcctccca tctgtatgtc tgcggcacct atgccttcca
      781 gcccaagtgc acctacatca acatgctcac gttcaccttg gaccgtgcag aatttgagga
      841 tgggaagggt aaatgcccat atgacccagc taagggtcac accggactcc ttgtggacgg
      901 tgagctgtac tcagccacac tcaataactt cctgggcaca gagccggtta tccttcgata
      961 catggggacc caccactcca tcaagacaga gtacctggct ttttggctga atgaacccca
     1021 ctttgtaggc tctgcctttg tccctgagag tgtgggaagc ttcacgggag acgatgacaa
     1081 gatctacttc ttcttcagtg agcgggcagt ggagtatgac tgctattccg agcaggtggt
     1141 ggctcgtgtg gcgagagtct gtaagggtga catgggggga gcacggacgc tgcagaagaa
     1201 atggacgacg ttcctgaagg ctcggttggt gtgctcagcc cctgactgga aggtctactt
     1261 caaccagctg aaggcggtgc acaccctgcg gggcgcctct tggcacaaca ccaccttctt
     1321 cggggttttt caagcgcgat ggggcgatat ggacctgtct gcagtttgtg agtaccagtt
     1381 ggaacagatc cagcaagtgt ttgagggtcc ctacaaggag tacagtgagc aagcccagaa
     1441 gtgggcccgc tatactgacc cggtacccag ccctcggcct ggttcgtgta tcaacaactg
     1501 gcaccgagac aatggctaca ccagttccct ggaactgccg gacaacaccc tcaacttcat
     1561 caagaagcac cccctgatgg aggaccaggt gaagcctcgg ttgggccgcc ccctacttgt
     1621 gaagaagaac actaacttca cacacgtggt ggccgacagg gtcccagggc ttgatggtgc
     1681 cacctataca gtgttgttca ttggtacagg agatggctgg ctgctgaagg ctgtgagcct
     1741 ggggccctgg atccacatgg tggaggaact gcaggtgttt gaccaggagc cagtggaaag
     1801 tctggtgctg tctcagagca agaaggtgct ctttgctggc tcccgctctc agctggttca
     1861 gctgtctctg gccgactgca caaagtaccg tttctgtgta gactgtgtcc tggccaggga
     1921 cccttactgt gcctggaatg tcaacaccag ccgctgtgtg gccaccacca gtggtcgctc
     1981 ggggtccttt ctggtccaac atgtggcgaa cttggacact tcaaagatgt gtaaccagta
     2041 tggcattaaa aaagtcagat ctattcccaa gaacatcacc gttgtgtcag gcacagacct
     2101 ggtcctaccc tgccacctct cgtccaattt ggcccatgcc cactggacct tcggaagcca
     2161 ggacctgcct gcagaacaac ctggctcctt tctttatgac acgggactcc aggcgctggt
     2221 ggtgatggcc gcacagtccc gtcactctgg accctatcgt tgctattcag aggagcaggg
     2281 gacaagactg gctgcagaaa gctaccttgt tgctgtcgtg gccggctcgt cggtgacact
     2341 ggaggcacgg gctcccttgg aaaacctggg gctcgtgtgg ctcgctgtgg tggccctggg
     2401 ggctgtgtgc ctggtgctgc tgctgctggt cctatcgctc cgccggcgac ttcgagaaga
     2461 gctagaaaag ggtgccaagg catctgagag gacactggtg taccccttgg aactgcccaa
     2521 ggagcctgcc agtcccccct tccgtcctgg ccccgaaact gatgagaaac tttgggatcc
     2581 tgtcgggtac tactattcgg atggctctct caagattgtg cctggtcacg cccggtgcca
     2641 gcctgggggt gggccccctt ccccacctcc tggcatacct ggccagcctc tgccttctcc
     2701 aactcggctc cacctaggag gtggtcggaa ctcaaatgcc aatggttatg tgcgtttaca
     2761 gttgggcgga gaggaccgag gaggatctgg gcacccactg cctgagctcg cggatgaatt
     2821 acgacggaaa ctacaacagc gccagccgct gcctgactcc aacccagagg agtcttcagt
     2881 atgaggggac ccccccacct cattggcggg ggggggtctc atgggaggtg cactcttaac
     2941 ttttgcacag gcaccagcta cctcagggac atggcagggg cacttgctct gcctgggaca
     3001 gacactgccc agcatttgcc cggccgtgag gacctgctca gcatgggcac tgccacttgg
     3061 tgtggctcac caggacttca gcctcacagg agacacaccc tcctctgtga atttgagaca
     3121 tgtgggaccc cagcagccaa aactttgcaa ggaagaggtt tcaagatgtg ggcgtgtttg
     3181 tgcatatatg tgttggtatg catgtggaag aatgtgtgtg tgtgtgtgtg tgtgttgtaa
     3241 ctttcctgtc tctatcacgt cttcccttgg cctggggtcc tcctggttga gtctttggag
     3301 ctatgaaggg gaagggggtc atagcacttt gcttctccta cccccagctg tcccaagctt
     3361 tggggcagtg atgtacatac ggggaaggga aggacagggt gttgtacccc ttttggggga
     3421 gtgcgggact cgggggtggg cctagccctg ctcctagggc tgtgaatgtt ttcagggcgg
     3481 gggttggggg tggagatgga acctcctgct tcagggggag gggtgggcag ggcctcccac
     3541 ttgccctccg ggttcggtgg tattttatat ttgcgctctt ctgacagggc tgggaagggt
     3601 tgttggggga gggaagggag gaggtgggca tgctatggat actggcctat cctctccctg
     3661 ctctgggaaa agggctaaca gtgtaactta ttgtgtcccc acatatttat ttgttgtaaa
     3721 tatttgagta tttttatatt gacaaataaa atggagaaaa tgaaatttaa
//
