LOCUS       XM_011242863            3611 bp    mRNA    linear   ROD 07-FEB-2024
DEFINITION  PREDICTED: Mus musculus sema domain, immunoglobulin domain (Ig),
            short basic domain, secreted, (semaphorin) 3B (Sema3b), transcript
            variant X6, mRNA.
ACCESSION   XM_011242863
VERSION     XM_011242863.4
DBLINK      BioProject: PRJNA169
KEYWORDS    RefSeq.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_000075.7) annotated using gene prediction method: Gnomon,
            supported by mRNA and EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            On Sep 21, 2020 this sequence version replaced XM_011242863.3.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_000001635.27-RS_2024_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.2
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           RefSeqFE; cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/01/2024
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3611
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6J"
                     /db_xref="taxon:10090"
                     /chromosome="9"
     gene            1..3611
                     /gene="Sema3b"
                     /gene_synonym="SemA; sema5; Semaa; semaV"
                     /note="sema domain, immunoglobulin domain (Ig), short
                     basic domain, secreted, (semaphorin) 3B; Derived by
                     automated computational analysis using gene prediction
                     method: Gnomon. Supporting evidence includes similarity
                     to: 16 mRNAs, 74 ESTs, 78 long SRA reads, 17 Proteins, and
                     100% coverage of the annotated genomic feature by RNAseq
                     alignments, including 19 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:20347"
                     /db_xref="MGI:MGI:107561"
     CDS             807..3056
                     /gene="Sema3b"
                     /gene_synonym="SemA; sema5; Semaa; semaV"
                     /codon_start=1
                     /product="semaphorin-3B isoform X1"
                     /protein_id="XP_011241165.1"
                     /db_xref="GeneID:20347"
                     /db_xref="MGI:MGI:107561"
                     /translation="MGRAEAAAMIPGLALLWVAGLGDTAPNLPRLRLSFQELQARHGV
                     RTFRLERTCCYEALLVDEERGRLFVGAENHVASLSLDNISKRAKKLAWPAPVEWREEC
                     NWAGKDIGTECMNFVKLLHTYNHTHLLACGTGAFHPTCAFVEVGHRLEEPMLQLDRRK
                     LEDGKGKTPYDPRHRAASVLVGEELYSGVTADLMGRDFTIFRSLGQNPSLRTEPHDSR
                     WLNEPKFVKVFWIPESENPDDDKIYFFFRESAVEAAPAMGRMSVSRVGQICRNDLGGQ
                     RSLVNKWTTFLKARLVCSVPGVEGDTHFDQLQDVFLLSSRDRQTPLLYAVFSTSSGVF
                     QGSAVCVYSMNDVRRAFLGPFAHKEGPTHQWVSYQGRVPYPRPGMCPSKTFGTFSSTK
                     DFPDDVIQFARNHPLMYNPVLPMGGRPLFLQVGAGYTFTQIAADRVAAADGHYDVLFI
                     GTDVGTVLKVISVPKGSRPNSEGLLLEELQVFEDSAAITSMQISSKRQQLYIASRSAV
                     AQIALHRCTALGRACAECCLARDPYCAWDGSACTRFQPTAKRRFRRQDIRNGDPSTLC
                     SGDSSHSVLLEKKVLGVESGSAFLECEPRSLQAHVQWTFQGAGEAAHTQVLAEERVER
                     TARGLLLRGLRRQDSGVYLCVAVEQGFSQPLRRLVLHVLSAAQAERLARAEEAAAPAP
                     PGPKLWYRDFLQLVEPGGGGGANSLRMCRPQPGHHSVAADSRRKGRNRRMHVSELRAE
                     RGPRSAAHW"
ORIGIN      
        1 gaaaggccca aggctcctgg tggtggcccc tcctgccacc cctccacctc agctctgaca
       61 tggcccactg aagggaaggg caagaggcaa ggaggggagg aactgatctt tccaaaagct
      121 cctgggacct gagcttgctg tggagtgtac agtcatccct tagctgtgga gggacagtga
      181 caggtttctg gaactatatc cttggggcac ccttcacctt gaaacccaga aggagagggc
      241 catctttacc tgcccaaccc ttgctctcat tccactcctg cggggccacc ggtctccagc
      301 cagtcccagc tgcctgtgcc ggtcacccga tccaccctgt agccctgcaa actttatggt
      361 attcggggcg gtggctggcc tggtggaggc gggggctttt acttaaagga accgtcagag
      421 ggtgccctgt gggccctagc cttcttccct tccccaggac aagaggggtc aaggtgggag
      481 acccctgtca gagttcttgg tggagtgtgg gaaggcagcc ttgtcagcct cacagacttc
      541 tagtacctga gaaaagcaac tgctttgctc tttgcacttg gtgccctctg gaatgaccac
      601 aggatctgac tctcatctgt cggctcttcg ccctttactg cctggggacc ttgtccgcat
      661 catcagtatc cttgtctctg ccccaggctg gcatgaagtg ggtgcacagt gtttgtgaat
      721 taacgtctat cctggggcag agtccaggac tgctgaaggc tcctccacac acgcctgctg
      781 aaccctgagc gccctgagct gccggcatgg ggcgggctga ggccgccgcc atgatcccag
      841 gcctggccct tctctgggta gcagggctag gggatactgc ccctaacctt ccccgccttc
      901 ggctctcctt tcaagaatta caggcccggc atggtgtccg aaccttcagg ctggagcgga
      961 cctgctgtta tgaagccttg ctggtggatg aggagcgtgg acgcctgttt gtgggtgctg
     1021 agaaccacgt ggcttccctc agcctggaca acatcagcaa gcgagccaag aagctggcct
     1081 ggcccgcccc cgtggaatgg cgtgaagaat gcaactgggc agggaaggac attggtaccg
     1141 agtgcatgaa cttcgtgaag ctgctgcaca cctacaacca cacccacttg ctggcctgtg
     1201 gcacaggggc tttccaccca acctgtgcct ttgtggaggt gggccaccgg ctggaggaac
     1261 ccatgcttca actggaccgg aggaaacttg aggacggcaa ggggaagact ccttatgacc
     1321 caaggcatcg ggctgcctcg gtgctggtgg gggaagaact gtattctggg gtgacagcag
     1381 accttatggg ccgggacttt accatctttc gaagccttgg tcagaatccg agtctccgaa
     1441 cagagcccca tgattcccgc tggctcaatg aacccaagtt tgtcaaggtc ttttggatcc
     1501 cagagagtga gaaccctgat gacgataaaa tctatttctt cttccgcgag tccgctgtgg
     1561 aagcagcacc agcaatgggg cgcatgtctg tgtctcgtgt tggccagatc tgcaggaatg
     1621 acctgggtgg ccagcggagc ttggtcaaca aatggaccac atttctgaag gcgcggcttg
     1681 tgtgctcagt acctggagtt gagggtgaca cccactttga ccaacttcag gatgttttcc
     1741 ttctgtcctc ccgagaccgc cagacacctc ttctctatgc tgtcttctcc acctccagtg
     1801 gtgtcttcca gggctctgct gtgtgcgtgt acagcatgaa cgatgtgcgc cgagccttct
     1861 tgggaccttt tgctcacaaa gaggggccta cacaccagtg ggtgtcctac cagggtcgtg
     1921 tcccctaccc aagacctggc atgtgcccca gcaagacctt tggcaccttc agctccacca
     1981 aggacttccc agatgacgtt atccagtttg ctcggaacca ccctctcatg tacaacccag
     2041 tcctgcccat gggggggcgc cctctcttcc tacaagtggg agctgggtac accttcaccc
     2101 aaatcgccgc agaccgagta gcagctgccg atggacacta cgatgttctc ttcattggta
     2161 cagatgtggg cacagtgctg aaagtgatct cagtccccaa aggcagccga cctaattctg
     2221 aaggacttct cctggaagag ctgcaggtgt tcgaggactc tgccgctatc accagcatgc
     2281 aaatctcctc taaaaggcaa caactctaca tagcatcgcg cagcgcagtg gcccagattg
     2341 ctttgcatcg ctgcactgcc ctaggccgcg cctgcgcaga atgctgcttg gcccgtgatc
     2401 cttactgcgc ctgggatgga tcagcttgca cacgcttcca gcctacggcc aagagacggt
     2461 tccggaggca agacataagg aatggcgacc ccagcaccct atgctctgga gactcttctc
     2521 actctgtgct gctggagaag aaggtgttgg gtgtggagag cggcagcgcg tttctggagt
     2581 gtgagccccg ctcgctccag gcgcatgtgc agtggacctt ccaaggtgca ggggaggcag
     2641 ctcacaccca ggtgctggct gaggagagag tagagcgcac tgcgcggggg ctgctgttgc
     2701 gggggctgcg gcgccaggac tctggcgtgt atctttgcgt cgcggttgaa caaggctttt
     2761 cacaaccact gcgtcgcctg gtgctgcatg tgttgagtgc ggcgcaggct gaacgactgg
     2821 cacgggcaga ggaagcagcc gctcctgcac ctcctggccc taaactctgg taccgggact
     2881 ttctgcagtt ggtggagcca ggcggtggcg gaggtgcaaa ctccctgcga atgtgccgcc
     2941 cgcagcccgg gcaccactct gtggcagcag attcacgtcg taagggtcgc aacagacgga
     3001 tgcatgtctc tgagctccgt gctgagcgtg gaccacgtag tgcagctcac tggtgactcg
     3061 gctgtcccca caatgggacg aggctgaata tgacactcca aagaggggca gacagatgcc
     3121 aggaagacaa atgagttatg gctgggccac actgaggtcc ttgggccaac agagacacct
     3181 aacccttaca taggccctgg ccaaagggta gcttatttat taacaagata acccgtggat
     3241 gtagcctcaa agagtggcct aagctcaatt caggatctaa ccaggaggga ggggacagag
     3301 acgtggggtt ccagagtgga ccaggaccag agagttgtct tgggtggcag ccctggggaa
     3361 agaattctct ttcttgggca gcaagcagca agctgtgaac agattagacc gttgggtatg
     3421 gggtgaggca ggccaactgt actaaagtaa cgcaataaac acattatcag ctgacattgg
     3481 aatggcccca gcagacaaca ggtagtccta gaccttgctg ggggctcttg ggtatcgccc
     3541 taggggtctc aagacctgca ttttcctcat ccaagaatgc taaagtgaag attaaacgtg
     3601 ttagtagacg a
//
