LOCUS       NM_009150               1685 bp    mRNA    linear   ROD 04-JUN-2024
DEFINITION  Mus musculus selenium binding protein 1 (Selenbp1), mRNA.
ACCESSION   NM_009150
VERSION     NM_009150.3
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE   1  (bases 1 to 1685)
  AUTHORS   Jia,Y., Zhang,X., Wang,Y., Liu,Y., Dai,J., Zhang,L., Wu,X.,
            Zhang,J., Xiang,H., Yang,Y., Zeng,Z. and Chen,Y.
  TITLE     Knocking out Selenium Binding Protein 1 Induces Depressive-Like
            Behavior in Mice
  JOURNAL   Biol Trace Elem Res 202 (7), 3149-3162 (2024)
   PUBMED   37801218
  REMARK    GeneRIF: Knocking out Selenium Binding Protein 1 Induces
            Depressive-Like Behavior in Mice.
REFERENCE   2  (bases 1 to 1685)
  AUTHORS   Adams,D.J., Barlas,B., McIntyre,R.E., Salguero,I., van der
            Weyden,L., Barros,A., Vicente,J.R., Karimpour,N., Haider,A.,
            Ranzani,M., Turner,G., Thompson,N.A., Harle,V., Olvera-Leon,R.,
            Robles-Espinoza,C.D., Speak,A.O., Geisler,N., Weninger,W.J.,
            Geyer,S.H., Hewinson,J., Karp,N.A., Fu,B., Yang,F., Kozik,Z.,
            Choudhary,J., Yu,L., van Ruiten,M.S., Rowland,B.D., Lelliott,C.J.,
            Del Castillo Velasco-Herrera,M., Verstraten,R., Bruckner,L.,
            Henssen,A.G., Rooimans,M.A., de Lange,J., Mohun,T.J., Arends,M.J.,
            Kentistou,K.A., Coelho,P.A., Zhao,Y., Zecchini,H., Perry,J.R.B.,
            Jackson,S.P. and Balmus,G.
  CONSRTM   Sanger Mouse Genetics Project
  TITLE     Genetic determinants of micronucleus formation in vivo
  JOURNAL   Nature 627 (8002), 130-136 (2024)
   PUBMED   38355793
REFERENCE   3  (bases 1 to 1685)
  AUTHORS   Song,Y., Kurose,A., Li,R., Takeda,T., Onomura,Y., Koga,T.,
            Mutoh,J., Ishida,T., Tanaka,Y. and Ishii,Y.
  TITLE     Ablation of Selenbp1 Alters Lipid Metabolism via the Pparalpha
            Pathway in Mouse Kidney
  JOURNAL   Int J Mol Sci 22 (10), 5334 (2021)
   PUBMED   34069420
  REMARK    GeneRIF: Ablation of Selenbp1 Alters Lipid Metabolism via the
            Pparalpha Pathway in Mouse Kidney.
            Publication Status: Online-Only
REFERENCE   4  (bases 1 to 1685)
  AUTHORS   Lopez-Tello,J., Perez-Garcia,V., Khaira,J., Kusinski,L.C.,
            Cooper,W.N., Andreani,A., Grant,I., Fernandez de Liger,E.,
            Lam,B.Y., Hemberger,M., Sandovici,I., Constancia,M. and
            Sferruzzi-Perri,A.N.
  TITLE     Fetal and trophoblast PI3K p110alpha have distinct roles in
            regulating resource supply to the growing fetus in mice
  JOURNAL   Elife 8, e45282 (2019)
   PUBMED   31241463
  REMARK    Publication Status: Online-Only
REFERENCE   5  (bases 1 to 1685)
  AUTHORS   Bai,J., Yu,J., Wang,J., Xue,B., He,N., Tian,Y., Yang,L., Wang,Y.,
            Wang,Y. and Tang,Q.
  TITLE     DNA Methylation of miR-122 Aggravates Oxidative Stress in Colitis
            Targeting SELENBP1 Partially by p65NF-kappaB Signaling
  JOURNAL   Oxid Med Cell Longev 2019, 5294105 (2019)
   PUBMED   31019652
  REMARK    GeneRIF: oxidative stress-induced DNA methylation of miR-122
            aggravates colitis targeting SELENBP1 partially by p65NF-kappaB
            signaling and may promote the progression of Crohn's disease.
            Publication Status: Online-Only
REFERENCE   6  (bases 1 to 1685)
  AUTHORS   Eddleston,J., Murdoch,J.N., Copp,A.J. and Stanier,P.
  TITLE     Physical and transcriptional map of a 3-Mb region of mouse
            chromosome 1 containing the gene for the neural tube defect mutant
            loop-tail (Lp)
  JOURNAL   Genomics 56 (2), 149-159 (1999)
   PUBMED   10051400
REFERENCE   7  (bases 1 to 1685)
  AUTHORS   Chang,P.W., Tsui,S.K., Liew,C., Lee,C.C., Waye,M.M. and Fung,K.P.
  TITLE     Isolation, characterization, and chromosomal mapping of a novel
            cDNA clone encoding human selenium binding protein
  JOURNAL   J Cell Biochem 64 (2), 217-224 (1997)
   PUBMED   9027582
REFERENCE   8  (bases 1 to 1685)
  AUTHORS   Navarro,C.L., Cohen,S.D. and Khairallah,E.A.
  TITLE     Genes encoding the acetaminophen and selenium binding proteins map
            to mouse chromosome 3
  JOURNAL   Mamm Genome 7 (12), 919-920 (1996)
   PUBMED   8995767
REFERENCE   9  (bases 1 to 1685)
  AUTHORS   Lanfear,J., Fleming,J., Walker,M. and Harrison,P.
  TITLE     Different patterns of regulation of the genes encoding the closely
            related 56 kDa selenium- and acetaminophen-binding proteins in
            normal tissues and during carcinogenesis
  JOURNAL   Carcinogenesis 14 (3), 335-340 (1993)
   PUBMED   8453708
REFERENCE   10 (bases 1 to 1685)
  AUTHORS   Bansal,M.P., Mukhopadhyay,T., Scott,J., Cook,R.G., Mukhopadhyay,R.
            and Medina,D.
  TITLE     DNA sequencing of a mouse liver protein that binds selenium:
            implications for selenium's mechanism of action in cancer
            prevention
  JOURNAL   Carcinogenesis 11 (11), 2071-2073 (1990)
   PUBMED   2225343
COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
            NCBI review. The reference sequence was derived from AC087062.25.
            
            On Nov 17, 2006 this sequence version replaced NM_009150.2.
            
            Sequence Note: The RefSeq transcript and protein were derived from
            genomic sequence to make the sequence consistent with the reference
            genome assembly. The genomic coordinates used for the transcript
            record were based on alignments.
            
            Publication Note:  This RefSeq record includes a subset of the
            publications that are available for this gene. Please see the Gene
            record to access additional publications.
            
            ##Evidence-Data-START##
            Transcript exon combination :: BC011202.1, AK002447.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMN00849374, SAMN00849375
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on single protein-coding transcript
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-80                AC087062.25        94508-94587
            81-137              AC087062.25        98122-98178
            138-250             AC087062.25        98320-98432
            251-436             AC087062.25        98633-98818
            437-557             AC087062.25        99380-99500
            558-740             AC087062.25        101071-101253
            741-919             AC087062.25        101473-101651
            920-998             AC087062.25        103889-103967
            999-1120            AC087062.25        104050-104171
            1121-1213           AC087062.25        105264-105356
            1214-1332           AC087062.25        105500-105618
            1333-1685           AC087062.25        105831-106183
FEATURES             Location/Qualifiers
     source          1..1685
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6"
                     /db_xref="taxon:10090"
                     /chromosome="3"
                     /map="3 40.74 cM"
     gene            1..1685
                     /gene="Selenbp1"
                     /gene_synonym="Lp56; Lpsb; MTO; SBP56"
                     /note="selenium binding protein 1"
                     /db_xref="GeneID:20341"
                     /db_xref="MGI:MGI:96825"
     exon            1..80
                     /gene="Selenbp1"
                     /gene_synonym="Lp56; Lpsb; MTO; SBP56"
                     /inference="alignment:Splign:2.1.0"
     CDS             77..1495
                     /gene="Selenbp1"
                     /gene_synonym="Lp56; Lpsb; MTO; SBP56"
                     /EC_number="1.8.3.4"
                     /note="SP56; 56 kDa selenium-binding protein"
                     /codon_start=1
                     /product="methanethiol oxidase"
                     /protein_id="NP_033176.2"
                     /db_xref="CCDS:CCDS38540.1"
                     /db_xref="GeneID:20341"
                     /db_xref="MGI:MGI:96825"
                     /translation="MATKCTKCGPGYSTPLEAMKGPREEIVYLPCIYRNTGTEAPDYL
                     ATVDVDPKSPQYSQVIHRLPMPYLKDELHHSGWNTCSSCFGDSTKSRNKLILPGLISS
                     RIYVVDVGSEPRAPKLHKVIEASEIQAKCNVSSLHTSHCLASGEVMVSTLGDLQGNGK
                     GSFVLLDGETFEVKGTWEKPGDAAPMGYDFWYQPRHNVMVSTEWAAPNVFKDGFNPAH
                     VEAGLYGSRIFVWDWQRHEIIQTLQMTDGLIPLEIRFLHDPSATQGFVGCALSSNIQR
                     FYKNAEGTWSVEKVIQVPSKKVKGWMLPEMPGLITDILLSLDDRFLYFSNWLHGDIRQ
                     YDISNPQKPRLAGQIFLGGSIVRGGSVQVLEDQELTCQPEPLVVKGKRIPGGPQMIQL
                     SLDGKRLYATTSLYSAWDKQFYPDLIREGSMMLQIDVDTVNGGLKLNPNFLVDFGKEP
                     LGPALAHELRYPGGDCSSDIWI"
     exon            81..137
                     /gene="Selenbp1"
                     /gene_synonym="Lp56; Lpsb; MTO; SBP56"
                     /inference="alignment:Splign:2.1.0"
     exon            138..250
                     /gene="Selenbp1"
                     /gene_synonym="Lp56; Lpsb; MTO; SBP56"
                     /inference="alignment:Splign:2.1.0"
     exon            251..436
                     /gene="Selenbp1"
                     /gene_synonym="Lp56; Lpsb; MTO; SBP56"
                     /inference="alignment:Splign:2.1.0"
     exon            437..557
                     /gene="Selenbp1"
                     /gene_synonym="Lp56; Lpsb; MTO; SBP56"
                     /inference="alignment:Splign:2.1.0"
     exon            558..740
                     /gene="Selenbp1"
                     /gene_synonym="Lp56; Lpsb; MTO; SBP56"
                     /inference="alignment:Splign:2.1.0"
     exon            741..919
                     /gene="Selenbp1"
                     /gene_synonym="Lp56; Lpsb; MTO; SBP56"
                     /inference="alignment:Splign:2.1.0"
     exon            920..998
                     /gene="Selenbp1"
                     /gene_synonym="Lp56; Lpsb; MTO; SBP56"
                     /inference="alignment:Splign:2.1.0"
     exon            999..1120
                     /gene="Selenbp1"
                     /gene_synonym="Lp56; Lpsb; MTO; SBP56"
                     /inference="alignment:Splign:2.1.0"
     exon            1121..1213
                     /gene="Selenbp1"
                     /gene_synonym="Lp56; Lpsb; MTO; SBP56"
                     /inference="alignment:Splign:2.1.0"
     exon            1214..1332
                     /gene="Selenbp1"
                     /gene_synonym="Lp56; Lpsb; MTO; SBP56"
                     /inference="alignment:Splign:2.1.0"
     exon            1333..1685
                     /gene="Selenbp1"
                     /gene_synonym="Lp56; Lpsb; MTO; SBP56"
                     /inference="alignment:Splign:2.1.0"
     regulatory      1667..1672
                     /regulatory_class="polyA_signal_sequence"
                     /gene="Selenbp1"
                     /gene_synonym="Lp56; Lpsb; MTO; SBP56"
                     /note="hexamer: AATAAA"
     polyA_site      1685
                     /gene="Selenbp1"
                     /gene_synonym="Lp56; Lpsb; MTO; SBP56"
                     /note="major polyA site"
ORIGIN      
        1 ccagcactgg tctctgctga gcctctgctc gttcctggca aatcctgcag gacccgagtg
       61 tcagccagcc agcagcatgg ctacaaaatg cacaaagtgt ggtccaggtt actccacccc
      121 tctggaggcc atgaaaggac cccgagagga gattgtctac ttgccctgca tttaccggaa
      181 cacaggcact gaagccccgg attatttggc cactgtggat gtagacccta agtctcccca
      241 gtatagccag gtcatccaca ggttgcccat gccctacctg aaggacgagc tgcaccactc
      301 aggatggaac acctgcagca gctgctttgg ggacagcacg aagtcacgca acaagctgat
      361 actgcctggt ctcatctcct cccgcatcta cgtggtggat gtgggctctg agcctcgtgc
      421 cccgaagttg cacaaggtca ttgaagccag tgaaatccaa gccaagtgca acgtgagcag
      481 tttgcacacc agccactgcc tggccagtgg agaagtcatg gtcagcacct tgggggatct
      541 ccagggtaat ggcaaaggga gttttgtgct gctggatggg gagaccttcg aggtgaaagg
      601 gacatgggag aagcctgggg atgcagctcc aatgggctac gacttctggt accagcctcg
      661 acacaatgtc atggtcagca ctgaatgggc agctcccaat gtcttcaaag atggcttcaa
      721 cccggctcat gtggaggctg ggctgtacgg gagccgcata tttgtgtggg actggcagcg
      781 ccatgagatt atccagaccc tgcaaatgac agatgggctg atacccctgg agatccgctt
      841 cctgcacgac ccaagtgcca cccagggttt tgtaggctgt gccctcagct ccaacatcca
      901 gcgcttctac aagaatgcgg aaggcacttg gtcagtggag aaggtgatcc aagtgccctc
      961 caagaaagtg aagggctgga tgttgccaga aatgcctggt ttgatcaccg acatcctgct
     1021 gtccctggat gaccgcttcc tttacttcag caactggctg catggggaca ttcggcagta
     1081 tgacatctct aacccacaga agccccgcct cgctgggcag atcttccttg ggggcagcat
     1141 tgttagagga ggctctgtgc aagtgctgga ggaccaagag ttaacctgtc agccggagcc
     1201 cctagtggtc aagggaaaac gaattcctgg aggccctcag atgatccagc tcagcttaga
     1261 tggcaagcgt ctttacgcca ctacatcact atacagcgcc tgggacaagc agttttaccc
     1321 tgacctcatt agggaaggct ccatgatgct tcaaattgat gtagacacag taaatggagg
     1381 gctgaagttg aaccccaact ttctggtgga ctttgggaag gagccccttg ggccagcact
     1441 ggctcacgag cttcgttacc cagggggtga ctgcagttct gacatctgga tctgaaggct
     1501 cgcactaggg gcccccctcc acattctgag cctgcctggc ttcactctgc tctcagcccc
     1561 aactctccaa ggccactctg agaccagcga gatctgtaga gcagcatctc tgtaccgttg
     1621 cttgttgttt gtgcttttct taagtgagct cctggaagca ccaagaaata aaatgctgaa
     1681 acttc
//
