LOCUS       NM_001033343            3923 bp    mRNA    linear   ROD 30-APR-2024
DEFINITION  Mus musculus SEC31 homolog B, COPII coat complex component
            (Sec31b), mRNA.
ACCESSION   NM_001033343 XM_140784 XM_917812
VERSION     NM_001033343.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE   1  (bases 1 to 3923)
  AUTHORS   Adams,D.J., Barlas,B., McIntyre,R.E., Salguero,I., van der
            Weyden,L., Barros,A., Vicente,J.R., Karimpour,N., Haider,A.,
            Ranzani,M., Turner,G., Thompson,N.A., Harle,V., Olvera-Leon,R.,
            Robles-Espinoza,C.D., Speak,A.O., Geisler,N., Weninger,W.J.,
            Geyer,S.H., Hewinson,J., Karp,N.A., Fu,B., Yang,F., Kozik,Z.,
            Choudhary,J., Yu,L., van Ruiten,M.S., Rowland,B.D., Lelliott,C.J.,
            Del Castillo Velasco-Herrera,M., Verstraten,R., Bruckner,L.,
            Henssen,A.G., Rooimans,M.A., de Lange,J., Mohun,T.J., Arends,M.J.,
            Kentistou,K.A., Coelho,P.A., Zhao,Y., Zecchini,H., Perry,J.R.B.,
            Jackson,S.P. and Balmus,G.
  CONSRTM   Sanger Mouse Genetics Project
  TITLE     Genetic determinants of micronucleus formation in vivo
  JOURNAL   Nature 627 (8002), 130-136 (2024)
   PUBMED   38355793
REFERENCE   2  (bases 1 to 3923)
  AUTHORS   Cinque,L., Forrester,A., Bartolomeo,R., Svelto,M., Venditti,R.,
            Montefusco,S., Polishchuk,E., Nusco,E., Rossi,A., Medina,D.L.,
            Polishchuk,R., De Matteis,M.A. and Settembre,C.
  TITLE     FGF signalling regulates bone growth through autophagy
  JOURNAL   Nature 528 (7581), 272-275 (2015)
   PUBMED   26595272
REFERENCE   3  (bases 1 to 3923)
  AUTHORS   Fusco,C., Micale,L., Egorov,M., Monti,M., D'Addetta,E.V.,
            Augello,B., Cozzolino,F., Calcagni,A., Fontana,A., Polishchuk,R.S.,
            Didelot,G., Reymond,A., Pucci,P. and Merla,G.
  TITLE     The E3-ubiquitin ligase TRIM50 interacts with HDAC6 and p62, and
            promotes the sequestration and clearance of ubiquitinated proteins
            into the aggresome
  JOURNAL   PLoS One 7 (7), e40440 (2012)
   PUBMED   22792322
REFERENCE   4  (bases 1 to 3923)
  AUTHORS   Lau,N.C., Seto,A.G., Kim,J., Kuramochi-Miyagawa,S., Nakano,T.,
            Bartel,D.P. and Kingston,R.E.
  TITLE     Characterization of the piRNA complex from rat testes
  JOURNAL   Science 313 (5785), 363-367 (2006)
   PUBMED   16778019
COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
            NCBI review. The reference sequence was derived from BB626493.1,
            AK158017.1 and AC151478.1.
            
            On or before Mar 20, 2007 this sequence version replaced
            XM_140784.6, XM_917812.2.
            
            ##Evidence-Data-START##
            Transcript exon combination :: SRR10223970.20649.1,
                                           SRR10223971.18058.1 [ECO:0000332]
            RNAseq introns              :: mixed sample support SAMN00849374,
                                           SAMN00849375 [ECO:0006172]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on single protein-coding transcript
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-493               BB626493.1         2-494
            494-876             AK158017.1         371-753
            877-976             AC151478.1         114852-114951       c
            977-1138            AC151478.1         114552-114713       c
            1139-1228           AC151478.1         113939-114028       c
            1229-1459           AC151478.1         110924-111154       c
            1460-1534           AC151478.1         109256-109330       c
            1535-1633           AC151478.1         108863-108961       c
            1634-1733           AC151478.1         108474-108573       c
            1734-1912           AC151478.1         107734-107912       c
            1913-2039           AC151478.1         107379-107505       c
            2040-2185           AC151478.1         106687-106832       c
            2186-2359           AC151478.1         105918-106091       c
            2360-2521           AC151478.1         105263-105424       c
            2522-2681           AC151478.1         102681-102840       c
            2682-2996           AC151478.1         101431-101745       c
            2997-3055           AC151478.1         101159-101217       c
            3056-3202           AC151478.1         100776-100922       c
            3203-3319           AC151478.1         100402-100518       c
            3320-3391           AC151478.1         99898-99969         c
            3392-3923           AC151478.1         99215-99746         c
FEATURES             Location/Qualifiers
     source          1..3923
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6"
                     /db_xref="taxon:10090"
                     /chromosome="19"
                     /map="19 37.98 cM"
     gene            1..3923
                     /gene="Sec31b"
                     /gene_synonym="Gm341; Sec31l2"
                     /note="SEC31 homolog B, COPII coat complex component"
                     /db_xref="GeneID:240667"
                     /db_xref="MGI:MGI:2685187"
     exon            1..61
                     /gene="Sec31b"
                     /gene_synonym="Gm341; Sec31l2"
                     /inference="alignment:Splign:2.1.0"
     exon            62..173
                     /gene="Sec31b"
                     /gene_synonym="Gm341; Sec31l2"
                     /inference="alignment:Splign:2.1.0"
     CDS             95..3571
                     /gene="Sec31b"
                     /gene_synonym="Gm341; Sec31l2"
                     /note="SEC31-related protein B; SEC31-like protein 2;
                     SEC31-like 2; Sec31 homolog B"
                     /codon_start=1
                     /product="protein transport protein Sec31B"
                     /protein_id="NP_001028515.1"
                     /db_xref="CCDS:CCDS37997.1"
                     /db_xref="GeneID:240667"
                     /db_xref="MGI:MGI:2685187"
                     /translation="MKLKELEKPAVQAWSPARQYPVYLATGTSAQQLDASFSTNATLE
                     IFEIDFRDPSLDLKHKGILSVSSRFHKLIWGSFGSGLLENSGVIAGGGDNGTLTLYNV
                     THVLSSGKEPLIAQKQKHTGAVRALDFNPFQGNLLASGASDSEIFIWDLNHLSVPMTP
                     GPKSQNPPEDIKALSWNLQVQHILASAHPSGKAVVWDLRKNEPIIKVSSHSSRMNCSG
                     LAWNPDIATQLVLCSEDDQLPVIQLWDLRFASSPLKVLESHSRGILSMSWNQADAELL
                     LSTAKDSQIFCWNLSSSEVVYKLPTQSSWCFDVQWCPQSPPVFSAVSFDGWISLCSVM
                     GRSWEAQHMRQADKVPEQVAQASLIPPLKKPPKWMRRPAGGSFAFGGKLVTFGLPSIP
                     VQPVAQACSRPVFISQVITESEVLTRSVVLQEALGSGNLLNYCQSKVQQASLPCEKIL
                     WQFLKVTLEQDSRPKFLGLLGYSREELQKKVDTCLKSDSKSQESPQLEAVDLKSDRAH
                     SPCAQASKHTAKEASESSAFFDELIPQNMTPWEIPTTEDTDGLLSQALLLGELRSAVE
                     LCLKEERFADAIILAQAGDAELLKWTQERYLAKRRTKTSSLLACVVKKNWKDLVCACR
                     LKNWREALALLLTYSGPEKFPELCDMLGTRMEQEGGRALTSEARLCYVCSGSVERLVE
                     SWAKFQQASSPMALQELMEQVTVLSRSLELLQGSNKMSPGPATTHRLTQYANLLAAQG
                     SLATAMSFLPSDCIQPGVQQLRDRLFHAQGSAVLGQQAPAFPFPRVAVGAALHSKETS
                     SYRRGLQPPQQVPAPSVRPRTTAQPSSVMPFSPSQPSPSQGSSDHRVLRPQAILPGHF
                     VPGVRPALSPPQLSGGQSVPAVNPAGFCGAWPLPGPTPVMASPDFMQPGSTHLPETPR
                     LLPLPPVGPPGPNPLSSQLPASPVTFSVAPPPGGPRAPCSSALPSSGILATCPGPQDS
                     WKVSPASQGNLQRKKLPETFMPPAPITAPLRSLGPEPQQALLPQPLVSSATLPPPGAP
                     RECSLQQLQPLPPERTEKELPPEHQCVKDSFEALLQRCSLTATDLKTKRKLEEAARRL
                     ECLYEKLCEGTLSPHVLAGLHEVARCVDAGSFEQGLAVHAQVAGCSSFSEVSSFMPML
                     KAVLTIAHKLQG"
     exon            174..297
                     /gene="Sec31b"
                     /gene_synonym="Gm341; Sec31l2"
                     /inference="alignment:Splign:2.1.0"
     exon            298..493
                     /gene="Sec31b"
                     /gene_synonym="Gm341; Sec31l2"
                     /inference="alignment:Splign:2.1.0"
     exon            494..589
                     /gene="Sec31b"
                     /gene_synonym="Gm341; Sec31l2"
                     /inference="alignment:Splign:2.1.0"
     exon            590..733
                     /gene="Sec31b"
                     /gene_synonym="Gm341; Sec31l2"
                     /inference="alignment:Splign:2.1.0"
     exon            734..876
                     /gene="Sec31b"
                     /gene_synonym="Gm341; Sec31l2"
                     /inference="alignment:Splign:2.1.0"
     exon            877..976
                     /gene="Sec31b"
                     /gene_synonym="Gm341; Sec31l2"
                     /inference="alignment:Splign:2.1.0"
     exon            977..1138
                     /gene="Sec31b"
                     /gene_synonym="Gm341; Sec31l2"
                     /inference="alignment:Splign:2.1.0"
     exon            1139..1228
                     /gene="Sec31b"
                     /gene_synonym="Gm341; Sec31l2"
                     /inference="alignment:Splign:2.1.0"
     exon            1229..1459
                     /gene="Sec31b"
                     /gene_synonym="Gm341; Sec31l2"
                     /inference="alignment:Splign:2.1.0"
     exon            1460..1534
                     /gene="Sec31b"
                     /gene_synonym="Gm341; Sec31l2"
                     /inference="alignment:Splign:2.1.0"
     exon            1535..1633
                     /gene="Sec31b"
                     /gene_synonym="Gm341; Sec31l2"
                     /inference="alignment:Splign:2.1.0"
     exon            1634..1733
                     /gene="Sec31b"
                     /gene_synonym="Gm341; Sec31l2"
                     /inference="alignment:Splign:2.1.0"
     exon            1734..1912
                     /gene="Sec31b"
                     /gene_synonym="Gm341; Sec31l2"
                     /inference="alignment:Splign:2.1.0"
     exon            1913..2039
                     /gene="Sec31b"
                     /gene_synonym="Gm341; Sec31l2"
                     /inference="alignment:Splign:2.1.0"
     exon            2040..2185
                     /gene="Sec31b"
                     /gene_synonym="Gm341; Sec31l2"
                     /inference="alignment:Splign:2.1.0"
     exon            2186..2359
                     /gene="Sec31b"
                     /gene_synonym="Gm341; Sec31l2"
                     /inference="alignment:Splign:2.1.0"
     exon            2360..2521
                     /gene="Sec31b"
                     /gene_synonym="Gm341; Sec31l2"
                     /inference="alignment:Splign:2.1.0"
     exon            2522..2681
                     /gene="Sec31b"
                     /gene_synonym="Gm341; Sec31l2"
                     /inference="alignment:Splign:2.1.0"
     exon            2682..2996
                     /gene="Sec31b"
                     /gene_synonym="Gm341; Sec31l2"
                     /inference="alignment:Splign:2.1.0"
     exon            2997..3055
                     /gene="Sec31b"
                     /gene_synonym="Gm341; Sec31l2"
                     /inference="alignment:Splign:2.1.0"
     exon            3056..3202
                     /gene="Sec31b"
                     /gene_synonym="Gm341; Sec31l2"
                     /inference="alignment:Splign:2.1.0"
     exon            3203..3319
                     /gene="Sec31b"
                     /gene_synonym="Gm341; Sec31l2"
                     /inference="alignment:Splign:2.1.0"
     exon            3320..3391
                     /gene="Sec31b"
                     /gene_synonym="Gm341; Sec31l2"
                     /inference="alignment:Splign:2.1.0"
     exon            3392..3923
                     /gene="Sec31b"
                     /gene_synonym="Gm341; Sec31l2"
                     /inference="alignment:Splign:2.1.0"
     regulatory      3900..3905
                     /regulatory_class="polyA_signal_sequence"
                     /gene="Sec31b"
                     /gene_synonym="Gm341; Sec31l2"
                     /note="hexamer: AGTAAA"
     polyA_site      3923
                     /gene="Sec31b"
                     /gene_synonym="Gm341; Sec31l2"
                     /note="major polyA site"
ORIGIN      
        1 ggttgggaca ggaccggccc aggcggtcgc ctgtgacccc tgacctgggc gctcggaaca
       61 gtgggccaaa ggtcatatat gtttcccgga aaccatgaag ttgaaagaac ttgagaagcc
      121 agctgtccaa gcgtggagcc cggccaggca gtaccctgtg tatctggcca caggaacatc
      181 tgctcagcaa ctagatgcct cctttagcac aaatgccacc ctggaaatat ttgagattga
      241 tttcagggac ccttctctgg acttgaaaca caaaggaatt ctttctgtct ccagcaggtt
      301 tcacaagcta atatggggaa gctttggcag tgggcttctg gaaaactccg gggttattgc
      361 tggtggagga gacaacggca cactgactct atacaatgtg acccacgtcc tttcttcagg
      421 gaaggagccc ctgattgccc agaaacagaa gcacactgga gctgtcagag ccttggactt
      481 taatcctttc cagggcaatc tcctggcctc aggagccagt gactctgaga tcttcatttg
      541 ggatttgaac cacctgagtg tcccaatgac acctggaccc aagtcacaga accccccaga
      601 ggacatcaag gcattgtctt ggaacctcca agtccagcac atcctggctt ccgctcaccc
      661 cagcggcaag gcggtggtgt gggatctcag aaagaatgag cccatcatta aagtcagcag
      721 ccacagcagc aggatgaact gctcgggcct ggcctggaac ccagacatag ccactcagtt
      781 agtgctgtgc tcagaagacg accaactccc ggtgattcag ttgtgggacc tgcgcttcgc
      841 ttcgtcaccc ttgaaggtgc tggagagcca cagcaggggc atcttgtcga tgtcctggaa
      901 ccaggccgat gccgaactgc tgcttagcac tgccaaagac agccagatct tttgctggaa
      961 cctgtcaagc agtgaggtgg tctacaagct gcccacacag agcagctggt gctttgatgt
     1021 tcagtggtgc cctcagagcc ctcccgtgtt ctctgctgtc tccttcgatg gctggatcag
     1081 tttgtgctct gtgatgggta ggagctggga agcccagcac atgaggcagg ctgacaaggt
     1141 gcctgagcag gtggcccaag catcactcat ccctcccttg aagaagcctc ccaagtggat
     1201 gcgaaggccg gcaggcggtt catttgcttt tgggggaaag ctggttactt ttggccttcc
     1261 cagcatccct gtccagccag tggcacaggc ttgttcccgc cctgtcttca tcagtcaagt
     1321 catcacagag tcagaagtcc tgactcggtc agttgtgctg caggaggcct tgggatctgg
     1381 aaatctcctt aattattgtc agagcaaggt tcagcaagca tcactgccat gcgagaagat
     1441 actctggcag ttcctgaagg tgaccttaga gcaggattcc aggccgaagt tccttgggct
     1501 gttaggttac agcagagagg aacttcagaa gaaggtggac acttgcctga agagtgactc
     1561 aaaatcacag gaaagccctc agcttgaggc ggttgacctc aaaagtgaca gagcacacag
     1621 cccttgcgcc caggcctcca aacacactgc caaggaagcc tctgagtcct cagccttctt
     1681 tgatgagctg atacctcaga acatgactcc ctgggagatc cccaccacag aagacactga
     1741 tggactcctg agccaggctc tgctgctcgg ggaactgcgg tctgctgtgg agctgtgttt
     1801 gaaggaggaa cgctttgctg atgccatcat cctggctcag gctggggatg cagagctgct
     1861 caagtggaca caagaacgct acctagccaa gaggagaacc aaaacctcct cgcttctagc
     1921 ctgtgttgta aagaagaatt ggaaggacct agtatgtgcc tgtaggctga agaactggag
     1981 agaggcgctg gccttgctac tgacgtattc agggccagag aagttccctg agctctgtga
     2041 catgctggga actcgaatgg agcaggaggg aggcagggca ctcacctctg aagccagact
     2101 ctgctacgtg tgctcaggga gtgtggagcg gctggtagag agctgggcaa aattccagca
     2161 agcctcgagc cccatggctc tgcaggagct aatggagcag gtgacagtcc tcagcaggag
     2221 cctggagctc cttcagggct ctaacaagat gagcccaggt cctgccacaa cacacaggct
     2281 cacccagtat gccaatctcc tggcagccca gggcagccta gccactgcta tgagcttcct
     2341 acccagcgac tgtatccagc caggagttca gcagctgaga gatcggcttt ttcatgccca
     2401 aggttctgcc gtcttaggcc aacaggctcc tgctttccct ttcccccgag ttgctgtagg
     2461 agctgccctc cactccaaag agacatcgtc atacagaagg gggctccagc ctcctcagca
     2521 ggtcccagct ccatctgtga ggccgaggac cacagctcag ccgtcatcag tgatgccctt
     2581 cagcccctcc cagcccagcc cttctcaggg ctcaagtgac cacagggtcc ttaggcccca
     2641 ggcaatcctg cctgggcatt tcgtccctgg agtaaggcct gctttatctc cgccacagct
     2701 gtccggagga caaagtgttc cagctgtaaa cccagctgga ttctgtggcg catggcctct
     2761 tcctggcccc actccagtca tggcgtcccc agacttcatg cagcccggct ctacccatct
     2821 gcctgaaact cctagactcc tccctctgcc tcctgtggga ccaccaggtc ccaaccctct
     2881 gagctcccag ctcccagcct ctcctgtcac tttctctgtg gctccccctc ctggaggtcc
     2941 aagagcaccg tgctctagtg cactcccgag ctctggcatc ttggccactt gtccaggacc
     3001 ccaggactcc tggaaagttt ctccagcctc ccagggaaac ctccaaagga aaaagctgcc
     3061 tgagacattc atgcctccag caccaattac agctccgctt aggagccttg gccctgagcc
     3121 acaacaggcc ctgctacctc agcccctagt ctccagtgcg accctgcctc ctcctggagc
     3181 cccaagagaa tgcagcctgc agcaactcca gccactgcct cctgagagga cagagaagga
     3241 gctgccccca gagcatcagt gcgtgaagga cagctttgag gcactccttc agcgctgttc
     3301 cctgaccgcc actgacctta aaacaaaaag gaagctggag gaggcagccc gccgcctaga
     3361 atgtctgtat gagaagcttt gcgaggggac actctcgccc cacgtcctgg ctgggctcca
     3421 tgaagttgcc cgatgtgtgg atgccggaag ctttgagcag ggcctcgcgg tgcatgcgca
     3481 ggtggcgggc tgcagcagct tcagcgaggt atccagcttc atgcctatgc tgaaggccgt
     3541 cctcaccatc gcgcacaagc tgcagggcta agtcaggact ctcttctacc aagaggccgc
     3601 ctctgctgtt acttaacgtg tggcagaaag ggggacgttt tttttttttt ccaacagagt
     3661 gtgtatttcc cccaatctct tcccttgctg ccaggtatgt gacactgggg gcttggcccc
     3721 acgccagctg agtgtctcct tctcattcct ttatgcccgg ccacctggga cttaccctgg
     3781 tgcttccacc tgagaggtga tgctcagagt tgaaccttac tctctctaat gtagcagccc
     3841 agcagggtct gcgccagagt gtctaacctg gggcattctg ttcacatggc ttccgagaga
     3901 gtaaacagtg ctattattag tca
//
