LOCUS       NM_133704               3922 bp    mRNA    linear   ROD 14-JUN-2024
DEFINITION  Mus musculus SEC22 homolog A, vesicle trafficking protein (Sec22a),
            transcript variant 1, mRNA.
ACCESSION   NM_133704
VERSION     NM_133704.5
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE   1  (bases 1 to 3922)
  AUTHORS   Stryke,D., Kawamoto,M., Huang,C.C., Johns,S.J., King,L.A.,
            Harper,C.A., Meng,E.C., Lee,R.E., Yee,A., L'Italien,L.,
            Chuang,P.T., Young,S.G., Skarnes,W.C., Babbitt,P.C. and Ferrin,T.E.
  TITLE     BayGenomics: a resource of insertional mutations in mouse embryonic
            stem cells
  JOURNAL   Nucleic Acids Res 31 (1), 278-281 (2003)
   PUBMED   12520002
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            AC154654.2.
            
            On Mar 22, 2023 this sequence version replaced NM_133704.4.
            
            Sequence Note: The RefSeq transcript and protein were derived from
            genomic sequence to make the sequence consistent with the reference
            genome assembly. The genomic coordinates used for the transcript
            record were based on alignments.
            
            ##Evidence-Data-START##
            Transcript exon combination :: AK082516.1, AK044615.1 [ECO:0000332]
            RNAseq introns              :: mixed sample support SAMN00849374,
                                           SAMN00849375 [ECO:0006172]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-29                AC154654.2         103066-103094
            30-228              AC154654.2         105159-105357
            229-392             AC154654.2         117924-118087
            393-587             AC154654.2         119125-119319
            588-703             AC154654.2         137305-137420
            704-769             AC154654.2         148049-148114
            770-3922            AC154654.2         152631-155783
FEATURES             Location/Qualifiers
     source          1..3922
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6"
                     /db_xref="taxon:10090"
                     /chromosome="16"
                     /map="16 25.21 cM"
     gene            1..3922
                     /gene="Sec22a"
                     /gene_synonym="1810005C06Rik; Sec22l2"
                     /note="SEC22 homolog A, vesicle trafficking protein"
                     /db_xref="GeneID:317717"
                     /db_xref="MGI:MGI:2447876"
     exon            1..29
                     /gene="Sec22a"
                     /gene_synonym="1810005C06Rik; Sec22l2"
                     /inference="alignment:Splign:2.1.0"
     exon            30..228
                     /gene="Sec22a"
                     /gene_synonym="1810005C06Rik; Sec22l2"
                     /inference="alignment:Splign:2.1.0"
     exon            229..392
                     /gene="Sec22a"
                     /gene_synonym="1810005C06Rik; Sec22l2"
                     /inference="alignment:Splign:2.1.0"
     exon            393..587
                     /gene="Sec22a"
                     /gene_synonym="1810005C06Rik; Sec22l2"
                     /inference="alignment:Splign:2.1.0"
     exon            588..703
                     /gene="Sec22a"
                     /gene_synonym="1810005C06Rik; Sec22l2"
                     /inference="alignment:Splign:2.1.0"
     exon            704..769
                     /gene="Sec22a"
                     /gene_synonym="1810005C06Rik; Sec22l2"
                     /inference="alignment:Splign:2.1.0"
     exon            770..3922
                     /gene="Sec22a"
                     /gene_synonym="1810005C06Rik; Sec22l2"
                     /inference="alignment:Splign:2.1.0"
     regulatory      1628..1633
                     /regulatory_class="polyA_signal_sequence"
                     /gene="Sec22a"
                     /gene_synonym="1810005C06Rik; Sec22l2"
                     /note="hexamer: AATACA"
     polyA_site      1645
                     /gene="Sec22a"
                     /gene_synonym="1810005C06Rik; Sec22l2"
                     /note="major polyA site"
     polyA_site      2878
                     /gene="Sec22a"
                     /gene_synonym="1810005C06Rik; Sec22l2"
     regulatory      3889..3894
                     /regulatory_class="polyA_signal_sequence"
                     /gene="Sec22a"
                     /gene_synonym="1810005C06Rik; Sec22l2"
                     /note="hexamer: ATTAAA"
     polyA_site      3922
                     /gene="Sec22a"
                     /gene_synonym="1810005C06Rik; Sec22l2"
ORIGIN      
        1 actccgagcc gcgggtcccg gagcgacagg tcttctgtgg gttgaaatgt ctatgatttt
       61 gtctgcctca gtcattcgtg tgagggatgg actaccgctg tctgcatcca ctgattatga
      121 gcagagcaca ggaatgcagg agtgcagaaa gtactttaag atgctgtcca ggaaacttgc
      181 tcaatttcct gatagatgta cactgaaaac ggggcgctat aacattaatt tcattagctc
      241 tctgggagtg agctacatga tgttgtgcag tgagaattat ccaaatgttc tcgccttctc
      301 tttcctggat gagcttcaga aggagttcat tactacttat aacatgatga agacaaatac
      361 tgctgtcaga ccatactgtt tcattgaatt tgataacttc attcagagga ccaagcagcg
      421 atataataat cccaggtctc tttcaacaaa aataaatctg tctgacatgc agatggaaat
      481 caagctgagg cccccttatc aaatcccaat gtgtgaactg ggatcagcaa atggagtcac
      541 atctgcattt tctgttgact gtaaaggtgc tggtaagatt tcttctgccc atcagcgact
      601 agaaccagca actctgtcag ggattgtggc gtttatcctt agtcttttat gtggagctct
      661 gaatttaatt cgaggctttc atgccataga aagcctcctg cagagtgatg gtgaggatct
      721 taattacatt attgcatttt tccttgggac agcagcctgc ctttaccagt gttatttact
      781 tgtgtactac accagctggc ggaatgtcaa gtcatttctg actttcggct taatctgtct
      841 gtgcaacatg tatctctacg aactgcgcaa cctctggcag cttttctttc atgtgactgt
      901 gggagcgttt gttacactgc agatctggct gaggcaagcc caaggcaagg ctcctgacca
      961 tgatgtctga catctccctt cggatgattt gcctttgcct tcaggggaag aaggagagga
     1021 cataaatttg ctgccagtgt gatgaagaaa ccagtcacca caccagagaa gctctgcttt
     1081 ctttctctgc ccatcttccc gttttgtttt acaaatcagc ctgtgagcgt gtgagacctg
     1141 gtaagaaaac ttccacaagg atccttccta cagtggaatg tcaggccatc acagcagaag
     1201 ttcagaatca cctgaagacc tggcaggcag cactgaatcc tcaccagaga gttaagcaaa
     1261 gcttagtcct gggacgtgct ctgaggacca ggcagaaatg ctgcaaccta agtttgcctt
     1321 tgtgaggcat tagtgtagac caatgaagaa gatgctgcag caattggaaa gctacgatct
     1381 aagacagcca ctgtactaag tgtcagatta ttggcacagt tgtagtatcg agagtttatg
     1441 aagcctagaa tggcatggaa ttgatttttt ttactttttc tgtttctgcc accttttaac
     1501 tctggagatc acctggtgtg ggagagggct gtgatgtaca tctctacaat atcacaagtc
     1561 ctgacaacac agtgataacg tgttttcttt ctagaccatg tttatcattt cttttgaaat
     1621 cactaaaaat acatgattca tttgactatt gtggtcttcc aaattcttat catttgggta
     1681 ctatgtatac tattatttgc ttagtttcta acctttaaga tcataaagta tttaacaaag
     1741 aaaggagccc ctactccaag tggaaaatga gttatcagtt tgccagcaca caatgaaatg
     1801 ctaagttctc acaaggtact gatacccacc agggctctag acccaagtag cacattcatt
     1861 gtaatagtga aaggtgttgc ctggcaccaa aatgagagcc ctgtgggata ctccaaggat
     1921 aatggaaaac tgcaaaggca atggcttttt catggtggca cagcactggt tagttatggt
     1981 tacacccaga accagttcat ttgttccaga gctgctgagt gtgagaaatg agacgtcccc
     2041 tgacaattcc gtttacttaa tggtttgggg aggtaactgg tatccagaag aaataacact
     2101 cttataacct tggaagatta ttcaagccat tttgaattca tgatagagaa gcacagcttg
     2161 attctatttg caaaaatgta caagtctact ggtttggagc catcatgaat gatttgcctt
     2221 tgtttttaaa gaaaagattc caaacaagga ctgcatagga ttctggtaac tttatatcat
     2281 ccctcaaaac aatgggcctt ggtatgtagt cccttcaggg gctgtaatta cttgatagga
     2341 ggagtcactg aactgcctca tctctctaac ccattgtgtg gacacttgca aaagtggaag
     2401 atacctggaa ccttcactgc ccctccatct tagaaaaata aggtagaagg taggcagtaa
     2461 gtgggtttat gatgtccatg gtttatttaa aacaaactcc aagtctgtct agatttctgt
     2521 ggtaacaaag ctgctaacaa agttgtcacg taccttctga gagcagcccc gagcgaggca
     2581 ccacatggac tgtgtttggc attgtatacc tattgagcct tgtaagtaaa gtggttcaac
     2641 ttaggaaggc tttctgagct agtgggtaga gcagaagaga ttcctcatga tagttaatca
     2701 accaggaaat gtgggctttc tgattaattg tggctttact acatctccgt atttgatagc
     2761 tctcttactg gtttgattca aaagctacct cagcatcact gtgttgtgtt gcagtgttta
     2821 gaatttgagt ctgttcagca ggggcacttg aaaaaaaaat caccatttat ttctaaaagc
     2881 ttgtttttct gtttgtgttt taccagctgt tttgggttaa gagagtgttt atatcttaat
     2941 gaaacagcta taagtaatct tttctgtatc ccactgccat ctttcattct ttagaatgtg
     3001 catccctaag agggaacata attaccttga tgttgtccaa gaatctctag gcttgtcagg
     3061 gtcctagaga gcctcttcag tgtctaagct gtagcactga tagcagcttc catttgaagt
     3121 gcgcctttac tcccaagcat tcgctccctc ggggtcctcg tgaggtgtgt gtggctgtgc
     3181 tggagtaatc agatccccac ttacgtgtca catagctaag tacacgtgcg ctaattgcgc
     3241 accaggctct gtgaccagtg tgggactaat gaaaggactc tgtgacaaca gtcttcccag
     3301 catgtgtcaa tggatgttta tcttaattta gttctgaaat gctgcctgtt tactctgcca
     3361 agaacagaca ctctgtcata atctaaaagt atttgcttac tttattggtc tgggtttgaa
     3421 atgtattcat actgagtctt ttccctgaaa gaacaacatg ccaagaaaag tcacaaaaga
     3481 tggtgttgtt aaaagctgaa cagaaaggga gacagaccag agcagtgaca tacaatgggg
     3541 agctacagct gccactgtgg ctcggagggt gtgagtcggt gtccagaagc tagggtcaga
     3601 agggagcaag ttagacaggg ctctgtcaaa gatgaaacac attccagata aggtctcttg
     3661 tactgatgaa tttggtaaaa atgttctcac ttggggtcct gggaagtgct aaaatgagca
     3721 gaactcttaa atagacattg tatttgcata ttgtgcagat tatctgtttg tcacaggttt
     3781 ccatttctgt gtgtatgcat gcatgtgtgt ttgtgcatat gtgtgtgtaa ggattttatt
     3841 ttgttcctat aattaagaat tcttgccctg agctaagaac aagtacctat taaagcatga
     3901 aagtccattt gagacgaatg aa
//
