LOCUS       NM_001370881            2827 bp    mRNA    linear   ROD 23-AUG-2023
DEFINITION  Mus musculus short chain dehydrogenase/reductase family 42E, member
            2 (Sdr42e2), mRNA.
ACCESSION   NM_001370881 XM_017312477
VERSION     NM_001370881.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE   1  (bases 1 to 2827)
  AUTHORS   Gaudet P, Livstone MS, Lewis SE and Thomas PD.
  TITLE     Phylogenetic-based propagation of functional annotations within the
            Gene Ontology consortium
  JOURNAL   Brief Bioinform 12 (5), 449-462 (2011)
   PUBMED   21873635
REFERENCE   2  (bases 1 to 2827)
  AUTHORS   Diez-Roux G, Banfi S, Sultan M, Geffers L, Anand S, Rozado D, Magen
            A, Canidio E, Pagani M, Peluso I, Lin-Marq N, Koch M, Bilio M,
            Cantiello I, Verde R, De Masi C, Bianchi SA, Cicchini J, Perroud E,
            Mehmeti S, Dagand E, Schrinner S, Nurnberger A, Schmidt K, Metz K,
            Zwingmann C, Brieske N, Springer C, Hernandez AM, Herzog S, Grabbe
            F, Sieverding C, Fischer B, Schrader K, Brockmeyer M, Dettmer S,
            Helbig C, Alunni V, Battaini MA, Mura C, Henrichsen CN,
            Garcia-Lopez R, Echevarria D, Puelles E, Garcia-Calero E, Kruse S,
            Uhr M, Kauck C, Feng G, Milyaev N, Ong CK, Kumar L, Lam M, Semple
            CA, Gyenesei A, Mundlos S, Radelof U, Lehrach H, Sarmientos P,
            Reymond A, Davidson DR, Dolle P, Antonarakis SE, Yaspo ML, Martinez
            S, Baldock RA, Eichele G and Ballabio A.
  TITLE     A high-resolution anatomical atlas of the transcriptome in the
            mouse embryo
  JOURNAL   PLoS Biol 9 (1), e1000582 (2011)
   PUBMED   21267068
  REMARK    Publication Status: Online-Only
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            AC122214.4.
            
            On Jun 8, 2019 this sequence version replaced XM_017312477.1.
            
            Sequence Note: The RefSeq transcript and protein were derived from
            genomic sequence to make the sequence consistent with the reference
            genome assembly. The genomic coordinates used for the transcript
            record were based on alignments.
            
            ##Evidence-Data-START##
            RNAseq introns :: partial sample support SAMN00849387, SAMN01164139
                              [ECO:0000350]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            inferred exon combination :: based on alignments, homology
            RefSeq Select criteria    :: based on conservation, longest protein
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-343               AC122214.4         118666-119008
            344-1167            AC122214.4         121369-122192
            1168-1263           AC122214.4         123522-123617
            1264-1321           AC122214.4         125546-125603
            1322-1440           AC122214.4         126218-126336
            1441-1516           AC122214.4         126883-126958
            1517-1599           AC122214.4         129659-129741
            1600-1737           AC122214.4         131232-131369
            1738-1803           AC122214.4         132308-132373
            1804-1867           AC122214.4         135100-135163
            1868-1941           AC122214.4         137027-137100
            1942-2827           AC122214.4         139975-140860
FEATURES             Location/Qualifiers
     source          1..2827
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6"
                     /db_xref="taxon:10090"
                     /chromosome="7"
                     /map="7 64.92 cM"
     gene            1..2827
                     /gene="Sdr42e2"
                     /gene_synonym="EG436008; Gm5737"
                     /note="short chain dehydrogenase/reductase family 42E,
                     member 2"
                     /db_xref="GeneID:436008"
                     /db_xref="MGI:MGI:3645276"
     exon            1..343
                     /gene="Sdr42e2"
                     /gene_synonym="EG436008; Gm5737"
                     /inference="alignment:Splign:2.1.0"
     exon            344..1167
                     /gene="Sdr42e2"
                     /gene_synonym="EG436008; Gm5737"
                     /inference="alignment:Splign:2.1.0"
     CDS             376..2196
                     /gene="Sdr42e2"
                     /gene_synonym="EG436008; Gm5737"
                     /codon_start=1
                     /product="putative short-chain dehydrogenase/reductase
                     family 42E member 2"
                     /protein_id="NP_001357810.1"
                     /db_xref="GeneID:436008"
                     /db_xref="MGI:MGI:3645276"
                     /translation="MKTNPAGSPLETCQTAGQGEKGCPVCQACRGTSGLGSASESGSG
                     LRPGPGVVLDSGLGPGSGTSAVPGSGPQPSAVSVTGLRPGTTSGPNATLGPGLGAGSL
                     PGPGARSGLRPGSESVPQPGAGSVPQPGAGPVPQPGVGPVPHPGAGSVSQPGAGSVSQ
                     PVSESVTSPGSAPLPGLGLGPGTRRGSGTGSDPIESVRTPVPVQQQKTQAKHTQAPRQ
                     KVLVTGGGGYLGFSLGSSLAKRGTSVILLDLRRPQWPLPSGTEFVQADVRDEEALYQA
                     FQGVDCVFHVASYGMSGAEKLQKQEIESINVGGTKLVINVCVRRRVPRLVYTSTVNVT
                     FGGKPIEQGNEESIPYFPLDKHMDHYSRTKAIADQLTLMANGTPLLGGGTLRTCVLRP
                     PGIYGPEEQRHLPRVASHIKKRLFMFRFGDRKTRMNWVHVQNLVQAHMLAAEGLTMAK
                     GYVASGQAYYINDGESVNLFEWMAPLFEKLGYSQPWIQVPTSCVYLTAAVMEYLHLAL
                     RPICTIPPLLTRSEVLSVAVTHTFQIAKARTQLGYAPDKFSFADAVERYVQATTPQPR
                     CCIVLTLLRLLLMLLLLFALLGLALYFLGLQPLQAVVERL"
     exon            1168..1263
                     /gene="Sdr42e2"
                     /gene_synonym="EG436008; Gm5737"
                     /inference="alignment:Splign:2.1.0"
     exon            1264..1321
                     /gene="Sdr42e2"
                     /gene_synonym="EG436008; Gm5737"
                     /inference="alignment:Splign:2.1.0"
     exon            1322..1440
                     /gene="Sdr42e2"
                     /gene_synonym="EG436008; Gm5737"
                     /inference="alignment:Splign:2.1.0"
     exon            1441..1516
                     /gene="Sdr42e2"
                     /gene_synonym="EG436008; Gm5737"
                     /inference="alignment:Splign:2.1.0"
     exon            1517..1599
                     /gene="Sdr42e2"
                     /gene_synonym="EG436008; Gm5737"
                     /inference="alignment:Splign:2.1.0"
     exon            1600..1737
                     /gene="Sdr42e2"
                     /gene_synonym="EG436008; Gm5737"
                     /inference="alignment:Splign:2.1.0"
     exon            1738..1803
                     /gene="Sdr42e2"
                     /gene_synonym="EG436008; Gm5737"
                     /inference="alignment:Splign:2.1.0"
     exon            1804..1867
                     /gene="Sdr42e2"
                     /gene_synonym="EG436008; Gm5737"
                     /inference="alignment:Splign:2.1.0"
     exon            1868..1941
                     /gene="Sdr42e2"
                     /gene_synonym="EG436008; Gm5737"
                     /inference="alignment:Splign:2.1.0"
     exon            1942..2827
                     /gene="Sdr42e2"
                     /gene_synonym="EG436008; Gm5737"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 gggctgaaga agtggatgag gaaacaggtg gaataaagaa gaggagaaag ggaaacagaa
       61 tggtatggaa gagcggtagc tggtagagca gacaggacag gtcaggctct gcggctcctc
      121 tgcctctttt cttctccaga aacgcttgct caccctcagg tgagtggggc tgcgagactc
      181 taggctgaag agcgcggagc gacagggcgg gacagcaggg gcggaggggc agggcggggc
      241 agtgcccggg ccagccccgc tgctgccaca caggtggtgc ctgccttggc gcggagaccc
      301 aagaggcgct ggacgcacgc atcgctgcgg gagcccgagc caggtggaca gcctctatac
      361 atggcttcat agaaaatgaa gaccaaccct gcgggctccc cactagaaac ctgtcaaact
      421 gcaggccagg gtgagaaggg atgccctgta tgccaggcct gcagagggac ctcaggcctg
      481 ggatctgctt cagagtcggg atcaggcctt aggccagggc ctggagtggt tctggactct
      541 ggactggggc ctggatctgg aactagtgct gttccagggt ctgggccaca gcctagtgct
      601 gtttctgtga ctgggctgcg acctggtact acttcagggc ctaatgctac tctgggacct
      661 gggctaggag caggatcatt acctggacca ggagctaggt ctggactgag gccaggatca
      721 gagtcagtac ctcagccagg agcggggtca gtacctcaac caggagctgg cccagtacct
      781 cagccaggag ttggcccagt acctcaccca ggagctgggt cagtatccca gccaggagct
      841 gggtcagtat ctcagccagt aagcgagtca gtaactagtc caggatctgc accattacct
      901 gggctggggc tagggcctgg gaccagacga ggctccggga ctggctctga ccccattgaa
      961 tctgtgagaa ccccagtacc agtgcaacag cagaagactc aggccaaaca cacacaggcc
     1021 cccagacaga aggttctggt gaccggagga ggaggttacc tgggcttcag cctgggttcc
     1081 agcctggcca agagaggcac ctctgtcatc ctgcttgacc tccgcagacc ccagtggcca
     1141 ctaccttcag gaactgagtt tgtccaggct gatgtccgag atgaagaagc cctgtaccaa
     1201 gccttccagg gggtggactg tgtctttcat gtggcctcct acggcatgtc tggggctgag
     1261 aagctacaaa aacaggagat tgagtctata aatgtcggag gcaccaaact agtgattaat
     1321 gtctgtgtcc gtcggcgggt tccgagactc gtgtacacca gcacagtcaa cgtgacgttt
     1381 ggtgggaagc ccatagaaca gggcaatgag gagtccattc cgtacttccc cctggacaag
     1441 catatggacc actactctcg aaccaaagcc attgccgacc agttgactct catggccaat
     1501 gggacaccgc tcctaggagg aggcaccctc cgcacctgtg tgctccgtcc cccagggatc
     1561 tatggtcctg aagaacagag acacctgccc cgggtggcga gccacatcaa gaagagactg
     1621 ttcatgttcc ggtttgggga ccgcaagacg cgcatgaact gggtccatgt gcagaatctg
     1681 gtgcaggcac acatgctggc ggccgagggt ctcaccatgg ctaaaggcta cgtggctagc
     1741 gggcaagcat actacatcaa tgatggggag agtgtcaacc tctttgagtg gatggcccca
     1801 ctgtttgaga agctggggta cagtcagccc tggatccagg taccgacctc ctgtgtttat
     1861 ctgacagctg cagtgatgga gtacctgcac ctggcactga gacccatctg caccatcccc
     1921 ccactactca cccgcagtga ggtgctcagc gtggccgtga cgcacacttt ccagattgcc
     1981 aaggcccgca ctcaacttgg ttatgcgccg gacaagttca gcttcgccga cgcagtggag
     2041 cgatatgtgc aggccacgac cccgcagccc cgctgttgca tcgtgctgac gctcctgcgg
     2101 ctgctgctca tgctgctgct actgttcgcc ctgctcggcc tggccctgta cttcctaggg
     2161 ctgcagcctt tgcaggcggt ggtggaaagg ctctgagccc gaccacgacc acgaccacga
     2221 cctcgcccac gtagtagctc gctatctttc tacctggctt gacctcccgg tttaggcccg
     2281 cccctgcctc ttgactccgc cccgattcct ggccacgcct ctgcttcgct ctcttggctt
     2341 ctattcgtct gcacatttgg gtttcccggc tcttggctcc ttgatcctgt gtgttactct
     2401 tttcccgagg ctaggcgagg cggttgatga ggtcccagcc tcagcctgct tccccttccc
     2461 agccatttcc agtcctaccc agtctagccc tctccttcct attcttccag attcttccct
     2521 gatctgactt cacccctttc tgcctccatc tctacgctga aaccccagtg aggtcgcttc
     2581 tgttgggata agccttagcc ctgccttcac ggttggtcta aatgcgtgag ttctggttgg
     2641 tggagtctgt ggaattggac ctgtcttctg cctccttcaa ggaccttctc cctgccacgg
     2701 cttctttgag tttatcctga cacctatcta tgtgttgact agctgggaaa ggatacccaa
     2761 gcccaactta gtaacttttg gttctcattt aacgagtgga accgactaag cacagtaaaa
     2821 cgtttca
//
