LOCUS       NM_001082975            1243 bp    mRNA    linear   ROD 01-JUN-2024
DEFINITION  Mus musculus short chain dehydrogenase/reductase family 39U, member
            1 (Sdr39u1), transcript variant 1, mRNA.
ACCESSION   NM_001082975
VERSION     NM_001082975.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE   1  (bases 1 to 1243)
  AUTHORS   Dai,J., Jin,W.H., Sheng,Q.H., Shieh,C.H., Wu,J.R. and Zeng,R.
  TITLE     Protein phosphorylation and expression profiling by Yin-yang
            multidimensional liquid chromatography (Yin-yang MDLC) mass
            spectrometry
  JOURNAL   J Proteome Res 6 (1), 250-262 (2007)
   PUBMED   17203969
REFERENCE   2  (bases 1 to 1243)
  AUTHORS   Gallwitz,M., Reimer,J.M. and Hellman,L.
  TITLE     Expansion of the mast cell chymase locus over the past 200 million
            years of mammalian evolution
  JOURNAL   Immunogenetics 58 (8), 655-669 (2006)
   PUBMED   16807745
REFERENCE   3  (bases 1 to 1243)
  AUTHORS   Piao,Y., Ko,N.T., Lim,M.K. and Ko,M.S.
  TITLE     Construction of long-transcript enriched cDNA libraries from
            submicrogram amounts of total RNAs by a universal PCR amplification
            method
  JOURNAL   Genome Res 11 (9), 1553-1558 (2001)
   PUBMED   11544199
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            BY127480.1, AK049709.1 and AI843700.1.
            
            ##Evidence-Data-START##
            Transcript exon combination :: AK049709.1, AK009339.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMN01164131, SAMN01164134
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression,
                                      longest protein
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-8                 BY127480.1         1-8
            9-1225              AK049709.1         3-1219
            1226-1243           AI843700.1         1-18                c
FEATURES             Location/Qualifiers
     source          1..1243
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6"
                     /db_xref="taxon:10090"
                     /chromosome="14"
                     /map="14 28.19 cM"
     gene            1..1243
                     /gene="Sdr39u1"
                     /gene_synonym="2310014G06Rik"
                     /note="short chain dehydrogenase/reductase family 39U,
                     member 1"
                     /db_xref="GeneID:654795"
                     /db_xref="MGI:MGI:1916876"
     exon            1..43
                     /gene="Sdr39u1"
                     /gene_synonym="2310014G06Rik"
                     /inference="alignment:Splign:2.1.0"
     CDS             28..909
                     /gene="Sdr39u1"
                     /gene_synonym="2310014G06Rik"
                     /note="isoform 1 is encoded by transcript variant 1;
                     epimerase family protein SDR39U1"
                     /codon_start=1
                     /product="epimerase family protein SDR39U1 isoform 1"
                     /protein_id="NP_001076444.1"
                     /db_xref="CCDS:CCDS36935.1"
                     /db_xref="GeneID:654795"
                     /db_xref="MGI:MGI:1916876"
                     /translation="MRVLVGGGTGFIGTAVTQLLRGRGHEVKLVSRQPGPGRITWSEL
                     SESGLPLCDVVINLAGENILNPLRRWNETFQKEVLTSRLDTTHLLAKAITETAHPPQA
                     WILVTGVAYYQPSLTKEYDEDSPGGNFDFFSNLVTKWEAAARLPGESTRQVVVRSGVV
                     LGRGGGAISHMLLPFRLGLGGPIGSGRQFFPWIHIGDLAGILNYALEANHVQGVLNGV
                     APASTTTNAEFAQALGAALGRPAFIPVPSTVVRAVFGERAIMLLEGQKVVPRRTLATG
                     YQYSFPELRAALKDVVA"
     exon            44..150
                     /gene="Sdr39u1"
                     /gene_synonym="2310014G06Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            151..233
                     /gene="Sdr39u1"
                     /gene_synonym="2310014G06Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            234..355
                     /gene="Sdr39u1"
                     /gene_synonym="2310014G06Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            356..499
                     /gene="Sdr39u1"
                     /gene_synonym="2310014G06Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            500..1227
                     /gene="Sdr39u1"
                     /gene_synonym="2310014G06Rik"
                     /inference="alignment:Splign:2.1.0"
     regulatory      1205..1210
                     /regulatory_class="polyA_signal_sequence"
                     /gene="Sdr39u1"
                     /gene_synonym="2310014G06Rik"
                     /note="hexamer: AATAAA"
     polyA_site      1227
                     /gene="Sdr39u1"
                     /gene_synonym="2310014G06Rik"
                     /note="major polyA site"
ORIGIN      
        1 gcgcaggcgt gctagctccc tgtcgctatg cgggtgcttg taggtggcgg gacgggattc
       61 attgggacag ccgtaaccca gctgctgaga ggcaggggcc acgaagttaa attggtctcc
      121 agacagcctg gcccgggtcg aatcacgtgg agtgaactca gtgagtcggg gctgcccctc
      181 tgcgatgttg tcatcaacct ggctggagag aatatcctca accctctgcg aagatggaat
      241 gaaaccttcc aaaaagaggt tcttacgagc cgcttggata ctacccactt gctagccaaa
      301 gccatcaccg aaactgcgca cccacctcag gcttggattc tagtcacagg tgtagcttac
      361 taccagccaa gcctgactaa ggagtatgat gaagacagcc caggagggaa ttttgacttt
      421 ttctccaacc tggtaaccaa atgggaagca gcagccaggc ttcctggaga gtctacacgc
      481 caggtcgtgg tacgttcagg ggttgtgctg ggccgtggag gtggcgccat cagtcacatg
      541 cttctgccct tccgcctggg cctaggaggc cccatcggtt caggtcgcca attcttcccc
      601 tggatacaca ttggtgacct ggcaggaatt ctgaactatg cccttgaagc aaaccacgtc
      661 caaggagtcc tgaatggagt ggctccagca tctacaacta ccaatgctga gtttgcccag
      721 gccttgggtg ctgccctggg ccgcccagcc ttcatacctg tccccagcac tgtggtacga
      781 gcggtctttg gagaacgtgc catcatgctg ttggaagggc aaaaagtggt ccctcggcgg
      841 acactggcta ctggctacca gtactccttc ccagagctga gggctgcctt gaaggatgtt
      901 gtagcctgag cagagaagga gccccaaggc agaagctggg gcctgctccc gcactctgag
      961 aagtgggtca ggtgatgatc cctgcacttg attgagatca gaatccatca gggtcttaga
     1021 ctctgccccc cctcacccca ctctcttccc atgttcgttg atccacccct atctgagaaa
     1081 ctccagcctc aagaatataa tctcattcta accttcacct cttcaacttc ttctgtggct
     1141 tctgtgttac attgttgccc tggttctcat atatgctgtg tagacaatgt tctacagtta
     1201 tggcaataaa gatagattac atcgctaaaa aaaaaaaaaa aaa
//
