LOCUS       NM_001404338            1188 bp    mRNA    linear   ROD 02-JUN-2024
DEFINITION  Mus musculus stromal cell derived factor 2 (Sdf2), transcript
            variant 3, mRNA.
ACCESSION   NM_001404338
VERSION     NM_001404338.1
KEYWORDS    RefSeq.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE   1  (bases 1 to 1188)
  AUTHORS   Lorenzon-Ojea,A.R., Caldeira,W., Ribeiro,A.F., Fisher,S.J.,
            Guzzo,C.R. and Bevilacqua,E.
  TITLE     Stromal cell derived factor-2 (Sdf2): a novel protein expressed in
            mouse
  JOURNAL   Int J Biochem Cell Biol 53, 262-270 (2014)
   PUBMED   24878610
  REMARK    GeneRIF: Comparing the amino acid sequence and predicted 3D
            structure with other Sdf2-like proteins we suggest a role of mouse
            Sdf2 in the Unfolded Protein Response and ER-stress, similar to
            that of Sdf2l1 from human and mouse and SDF2-like from Arabidopsis
REFERENCE   2  (bases 1 to 1188)
  AUTHORS   Evsikov,A.V., Graber,J.H., Brockman,J.M., Hampl,A., Holbrook,A.E.,
            Singh,P., Eppig,J.J., Solter,D. and Knowles,B.B.
  TITLE     Cracking the egg: molecular dynamics and evolutionary aspects of
            the transition from the fully grown oocyte to embryo
  JOURNAL   Genes Dev 20 (19), 2713-2727 (2006)
   PUBMED   17015433
REFERENCE   3  (bases 1 to 1188)
  AUTHORS   Carramolino,L., Lee,B.C., Zaballos,A., Peled,A., Barthelemy,I.,
            Shav-Tal,Y., Prieto,I., Carmi,P., Gothelf,Y., Gonzalez de
            Buitrago,G., Aracil,M., Marquez,G., Barbero,J.L. and Zipori,D.
  TITLE     SA-1, a nuclear protein encoded by one member of a novel gene
            family: molecular cloning and detection in hemopoietic organs
  JOURNAL   Gene 195 (2), 151-159 (1997)
   PUBMED   9305759
  REMARK    Erratum:[Gene 1998 Jan 12;206(2):283]
REFERENCE   4  (bases 1 to 1188)
  AUTHORS   Shirozu,M., Tada,H., Tashiro,K., Nakamura,T., Lopez,N.D.,
            Nazarea,M., Hamada,T., Sato,T., Nakano,T. and Honjo,T.
  TITLE     Characterization of novel secreted and membrane proteins isolated
            by the signal sequence trap method
  JOURNAL   Genomics 37 (3), 273-280 (1996)
   PUBMED   8938438
REFERENCE   5  (bases 1 to 1188)
  AUTHORS   Hamada,T., Tashiro,K., Tada,H., Inazawa,J., Shirozu,M.,
            Shibahara,K., Nakamura,T., Martina,N., Nakano,T. and Honjo,T.
  TITLE     Isolation and characterization of a novel secretory protein,
            stromal cell-derived factor-2 (SDF-2) using the signal sequence
            trap method
  JOURNAL   Gene 176 (1-2), 211-214 (1996)
   PUBMED   8918255
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            AL591070.19.
            
            ##Evidence-Data-START##
            Transcript exon combination :: SRR17253011.7026764.1,
                                           SRR17253013.3024625.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMN00849377, SAMN00849382
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            CDS uses downstream in-frame AUG :: upstream AUG and CDS extension
                                                is not conserved
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-180               AL591070.19        103820-103999       c
            181-232             AL591070.19        99657-99708         c
            233-357             AL591070.19        99445-99569         c
            358-554             AL591070.19        98778-98974         c
            555-1188            AL591070.19        94506-95139         c
FEATURES             Location/Qualifiers
     source          1..1188
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6"
                     /db_xref="taxon:10090"
                     /chromosome="11"
                     /map="11 46.74 cM"
     gene            1..1188
                     /gene="Sdf2"
                     /note="stromal cell derived factor 2"
                     /db_xref="GeneID:20316"
                     /db_xref="MGI:MGI:108019"
     exon            1..180
                     /gene="Sdf2"
                     /inference="alignment:Splign:2.1.0"
     exon            181..232
                     /gene="Sdf2"
                     /inference="alignment:Splign:2.1.0"
     exon            233..357
                     /gene="Sdf2"
                     /inference="alignment:Splign:2.1.0"
     exon            358..554
                     /gene="Sdf2"
                     /inference="alignment:Splign:2.1.0"
     exon            555..1188
                     /gene="Sdf2"
                     /inference="alignment:Splign:2.1.0"
     regulatory      1181..1186
                     /regulatory_class="polyA_signal_sequence"
                     /gene="Sdf2"
                     /note="hexamer: AATAAA"
     polyA_site      1188
                     /gene="Sdf2"
                     /note="major polyA site"
ORIGIN      
        1 cttggatgat tagttctctc ggatctagga tggctgtctt gtcgcttctg ttgttgggtg
       61 gtttgtggag cgctgtggga gcgtccaaca tggctgtcgt tacttgcggc tccgtggtga
      121 agctactcaa tacacgccac aatgtccgac tgcattctca cgacgtgcgc tatgggtcag
      181 aatccccagc aggaggagta aggagcatcc aagtatccag tatctttaga agcatcttgt
      241 ctcgtgattt ggctgaattc atcacagcta cagaggatcg aattcatgtg cttgtccaag
      301 gccttaaagg ttcaatgaag attcacaaat ggctctcaca ggacatctta ttccatagta
      361 gtgggcagca gtcagtgaca ggtgtgacct ctgtggatga cagcaacagt tactggagga
      421 tacgggggaa gacagccaca gtgtgtgaaa ggggaacccc catcaaatgc gggcagccca
      481 tccgtctgac acacatcaac acaggtcgaa acctgcacag ccaccatttc acttcacctc
      541 tctctggaaa ccaggaagtg agtgcctttg gcgaagaagg tgaaggcgac tatctggatg
      601 actggacagt gctctgtaat ggaccttact gggttagaga tggtgaggtg aggttcaaac
      661 attcttccac tgacgtactg ctgtctgtca caggagaaca gtacggacga cccataagtg
      721 gacaaaaaga ggtacatggt atggcccagc caagtcagaa caactactgg aaggccatgg
      781 aaggcatctt catgaagccc agtgagttgc tgagggcaga ggtccatcat gcagagctgt
      841 gactctaaat actctgagcc actgtcgcca cacagtgttt gtagacatct gctgctgctt
      901 tactgcggga tccctgctcc aggtcctctg agcgtgctgc cttgggacct gcagcccttc
      961 acacttgaat tggttgctct cccaggctta gtcagttctc tcgggaaagg actcactcgt
     1021 ctgtgaaggt ggagatagct ttcttcatgc tggtaaaaga agttgaggag cttgcctgtc
     1081 ttagctggga agtgtaactc cgcaggaact gggcatcatg gattcttaat ttgtgatttc
     1141 tcctgttttg tctttctcca aaataatgaa taaataaata aataaaaa
//
