LOCUS       NM_145943               3203 bp    mRNA    linear   ROD 31-MAY-2024
DEFINITION  Mus musculus SDE2 telomere maintenance homolog (S. pombe) (Sde2),
            mRNA.
ACCESSION   NM_145943
VERSION     NM_145943.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE   1  (bases 1 to 3203)
  AUTHORS   Stryke,D., Kawamoto,M., Huang,C.C., Johns,S.J., King,L.A.,
            Harper,C.A., Meng,E.C., Lee,R.E., Yee,A., L'Italien,L.,
            Chuang,P.T., Young,S.G., Skarnes,W.C., Babbitt,P.C. and Ferrin,T.E.
  TITLE     BayGenomics: a resource of insertional mutations in mouse embryonic
            stem cells
  JOURNAL   Nucleic Acids Res 31 (1), 278-281 (2003)
   PUBMED   12520002
COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
            NCBI review. The reference sequence was derived from BC031781.1.
            
            ##Evidence-Data-START##
            Transcript exon combination :: BC031781.1, SRR1660821.197481.1
                                           [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMN00849374, SAMN00849375
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on single protein-coding transcript
            ##RefSeq-Attributes-END##
FEATURES             Location/Qualifiers
     source          1..3203
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="FVB/N"
                     /db_xref="taxon:10090"
                     /chromosome="1"
                     /map="1 84.46 cM"
     gene            1..3203
                     /gene="Sde2"
                     /note="SDE2 telomere maintenance homolog (S. pombe)"
                     /db_xref="GeneID:208768"
                     /db_xref="MGI:MGI:2384788"
     exon            1..142
                     /gene="Sde2"
                     /inference="alignment:Splign:2.1.0"
     CDS             23..1369
                     /gene="Sde2"
                     /note="UPF0667 protein C1orf55 homolog; protein SDE2
                     homolog; replication stress response regulator SDE2"
                     /codon_start=1
                     /product="splicing regulator SDE2"
                     /protein_id="NP_666055.1"
                     /db_xref="CCDS:CCDS15574.1"
                     /db_xref="GeneID:208768"
                     /db_xref="MGI:MGI:2384788"
                     /translation="MAEAAVVAWVRGPGTVWKALPCASVGCSVRDVIYRHCQEQEVPV
                     ECFFVTCNGVLVNAGDKVQHGAVYSLEPRLRGGKGGFGSMLRALGAQIEKTTNREACR
                     DLSGRRLRDVNHEKAMAEWVKQQAEREAEKEQRRLERLQRKLAEPAHCFTSPDYQRQC
                     HEMAERLEDSVLKGMQAASSKMVSAEITETRKRPNKSKTDQETSAKKRKRKCFWLGMD
                     GLEAAEGSSTGSSEDSSEDDSEDAPGTSEQSCCAREDGIDAVEVAADRPGSPRSSASG
                     THSESPEKLQCPVTEPGQGILENTGTEPGETSDKECNERKTVTDPEETPARKETESHE
                     ATEKDQKTGMSGGDRAAMVLSGEDRKSVPAANLEGNNSGDTALGLEAVDLSAFSSAAE
                     LESLGLERLKCELMVLGLKCGGTLQERAARLFSVRGLTKELIDPALFAKPSKGKKK"
     exon            143..260
                     /gene="Sde2"
                     /inference="alignment:Splign:2.1.0"
     exon            261..372
                     /gene="Sde2"
                     /inference="alignment:Splign:2.1.0"
     exon            373..542
                     /gene="Sde2"
                     /inference="alignment:Splign:2.1.0"
     exon            543..663
                     /gene="Sde2"
                     /inference="alignment:Splign:2.1.0"
     exon            664..1147
                     /gene="Sde2"
                     /inference="alignment:Splign:2.1.0"
     exon            1148..3189
                     /gene="Sde2"
                     /inference="alignment:Splign:2.1.0"
     regulatory      3163..3168
                     /regulatory_class="polyA_signal_sequence"
                     /gene="Sde2"
                     /note="hexamer: AATAAA"
     polyA_site      3189
                     /gene="Sde2"
                     /note="major polyA site"
ORIGIN      
        1 agaggttccg tcaccagacg aaatggcgga ggctgcggtg gtggcgtggg ttcgcggccc
       61 cggtaccgtg tggaaggcgc tgccgtgtgc ctcggttggg tgctccgtgc gcgatgtgat
      121 ctaccgacac tgccaggaac aggaagttcc cgtggaatgc ttctttgtga cgtgcaatgg
      181 agtcctcgtt aatgccggtg ataaggtgca gcatggagcc gtgtacagtt tggagcccag
      241 gcttcgtggg gggaaaggag gttttgggtc tatgcttcga gcacttggtg cacagataga
      301 gaagacaacc aatagagaag cctgccggga tctcagtggg aggagattac gagatgtcaa
      361 tcatgagaaa gcgatggctg agtgggtaaa acagcaagct gagcgagagg ctgaaaagga
      421 gcaaaggcgc ctggagaggc tgcagcgaaa gcttgccgag cctgcacact gcttcaccag
      481 tcccgactac cagaggcagt gccatgagat ggctgagcgt ctggaggact cagtcctcaa
      541 aggtatgcag gctgcatcca gcaagatggt atcagcagaa atcactgaga ctcggaaacg
      601 gcctaacaag tcaaaaacgg accaggaaac tagtgcaaaa aaaaggaaaa ggaaatgctt
      661 ttggttgggc atggatgggc tggaggctgc cgaggggtcc agtactggaa gctcagagga
      721 cagctcagag gatgacagtg aggatgctcc tgggacttcg gagcagagct gctgtgctcg
      781 ggaagacggc attgatgctg tagaggtggc agccgaccga cctggcagtc ctcggagctc
      841 ggcctctggt acacactctg agtcacctga aaagcttcag tgccccgtga ccgagcctgg
      901 gcagggcatt ttggagaaca caggaactga gccaggagag acctctgaca aggagtgcaa
      961 cgagaggaag acagtcacag acccagagga gacgccagca aggaaggaaa cagagagtca
     1021 tgaggccaca gaaaaggacc aaaagacagg aatgtctggt ggggacagag ctgccatggt
     1081 tttgtctgga gaagacagga aaagtgtccc tgctgctaat ctggagggaa acaactcagg
     1141 agacacagct cttggtctgg aagcggtgga tctgtcagca ttcagctctg cagccgagtt
     1201 ggagtcgctg ggtttggaga ggctcaagtg tgaactgatg gtccttggac tgaagtgtgg
     1261 ggggaccctg caggagcgcg cagccaggct cttctctgtc agaggcctca caaaggaact
     1321 cattgaccca gctttatttg ccaagccttc caaggggaag aagaagtgaa tttccttggc
     1381 acacttcctc cgctgtgaca gacttgtggc ctgtgttcct tttgatacta aaagccaatt
     1441 ttttaataat tcggttctaa ctagtctctt ttcaaactag tctcttttca gtggtacctg
     1501 aacttgaggt tttcgttgga ggagaaaact tttgtatgtt atttttcttt gtttttgatg
     1561 tttttgtaag agatactctg tagcccagac tgaccaagaa ctgtgtggtt cactttggtc
     1621 tcaaacttgc agtgatcctc ctgtctcgca tgagctgctg tgcctgcttt gtcagaggtt
     1681 tatacatttc tttggcttta tatactgtgt cacttgagta agatattttc aagaaattta
     1741 tttgtataac ccaaagcagt caggtttgta gacacagata ttcataacat tcattttaaa
     1801 aacttgtttc tctttctagg agagagaaag agagagaatg agaatatgaa tgtgtgtgtg
     1861 tgtgtgtgtg tgtgagacca gggatggagc ctagctgctt ccaggcctct cactggggat
     1921 ttttattcta gctagggacc tattttgttt ggttttcaaa gaatcagttt tttgtctttg
     1981 tggatttttc tcagttgttg atctcattgg catttgaatt gtatttcctc tcctacatgc
     2041 cttgtgttta tcatttttct ttagctcctt aagtctttga tcactgatta tagattttat
     2101 ttttattatt attagtgtat tgcccaatta gcaaatgttt gtgttttctg taaatgtttt
     2161 attgatagtg actctctgac tattcaggac agaaagtacc tggcatcctt gttgtgactg
     2221 acccaggata gggtctgaca tgatctgtgc tgtgtgtgtt ggaaagaacg taccatcagc
     2281 cggcagcagg gtgggttctg gacacctatc atgtgagtgg ttggtcggat cggtcagatg
     2341 accgccttcg ctggttcatt ttcataagga actaagagca aaatcaaatc tcaattagga
     2401 ttgtggcaat tgcctttttt gagattaaaa ataacttcat cagcgtttgc taagttgtca
     2461 gttgtatatt aattcagtga ctttatatgt ctggctctgg gctggagaga ccgcactgac
     2521 tgctcttcca aaggtcctga gttcagttcc cagcaaccac ataatggctc acaaccatca
     2581 gtacagctac agtgtactca tatactatac ataaaataaa taagtaaata aatcttttaa
     2641 aaaatatatg gctctgatgg gttttggatt tttttcccca tctgacagtt cacgcatgga
     2701 cactgcgtcc tgattaggtc cacagtttct acttctctaa ctcttctggt ttactttata
     2761 tgttaaagct actgttcagt tcttacactt attgaacatt acatcatgaa attcccttca
     2821 tctctggtga gtttcttgct cacctgtatt atctaaagca cagctttgtc cttgtttcca
     2881 cagtgcgttt tctgttcctc tctccttgct cctcctgtct aacacacagc aggtgtgtct
     2941 cgcatctgtg tctgacttct tgtcatcatc atcactgtca tagccatgat tgtcattgtc
     3001 atcatcttca tctggtccct gtctctgatg acaggtcagc agtgagtcac atggttgttt
     3061 cggtcataac attttctttg gggtgttttc aggtgtgcct aaatgtctac tcttctgctc
     3121 tggagtttgg tgaacttcat ggttttgtat atttattcca ttaataaatt tggaaaaaat
     3181 tttaagcaaa aaaaaaaaaa aaa
//
