LOCUS       NM_145535               1412 bp    mRNA    linear   ROD 30-APR-2024
DEFINITION  Mus musculus syndecan binding protein (syntenin) 2 (Sdcbp2), mRNA.
ACCESSION   NM_145535
VERSION     NM_145535.2
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE   1  (bases 1 to 1412)
  AUTHORS   Adams,D.J., Barlas,B., McIntyre,R.E., Salguero,I., van der
            Weyden,L., Barros,A., Vicente,J.R., Karimpour,N., Haider,A.,
            Ranzani,M., Turner,G., Thompson,N.A., Harle,V., Olvera-Leon,R.,
            Robles-Espinoza,C.D., Speak,A.O., Geisler,N., Weninger,W.J.,
            Geyer,S.H., Hewinson,J., Karp,N.A., Fu,B., Yang,F., Kozik,Z.,
            Choudhary,J., Yu,L., van Ruiten,M.S., Rowland,B.D., Lelliott,C.J.,
            Del Castillo Velasco-Herrera,M., Verstraten,R., Bruckner,L.,
            Henssen,A.G., Rooimans,M.A., de Lange,J., Mohun,T.J., Arends,M.J.,
            Kentistou,K.A., Coelho,P.A., Zhao,Y., Zecchini,H., Perry,J.R.B.,
            Jackson,S.P. and Balmus,G.
  CONSRTM   Sanger Mouse Genetics Project
  TITLE     Genetic determinants of micronucleus formation in vivo
  JOURNAL   Nature 627 (8002), 130-136 (2024)
   PUBMED   38355793
REFERENCE   2  (bases 1 to 1412)
  AUTHORS   Hoffman,B.G., Zavaglia,B., Witzsche,J., Ruiz de Algara,T.,
            Beach,M., Hoodless,P.A., Jones,S.J., Marra,M.A. and Helgason,C.D.
  TITLE     Identification of transcripts with enriched expression in the
            developing and adult pancreas
  JOURNAL   Genome Biol 9 (6), R99 (2008)
   PUBMED   18554416
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            AL928719.6, AK144452.1 and AI448770.1.
            
            On Aug 13, 2013 this sequence version replaced NM_145535.1.
            
            Sequence Note: This RefSeq record was created from transcript and
            genomic sequence data to make the sequence consistent with the
            reference genome assembly. The genomic coordinates used for the
            transcript record were based on transcript alignments.
            
            ##Evidence-Data-START##
            Transcript exon combination :: BC005556.1, AK144452.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMN00849374, SAMN00849375
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression,
                                      longest protein
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-35                AL928719.6         135367-135401
            36-1396             AK144452.1         1-1361
            1397-1412           AI448770.1         1-16                c
FEATURES             Location/Qualifiers
     source          1..1412
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6"
                     /db_xref="taxon:10090"
                     /chromosome="2"
                     /map="2 74.83 cM"
     gene            1..1412
                     /gene="Sdcbp2"
                     /note="syndecan binding protein (syntenin) 2"
                     /db_xref="GeneID:228765"
                     /db_xref="MGI:MGI:2385156"
     exon            1..82
                     /gene="Sdcbp2"
                     /inference="alignment:Splign:2.1.0"
     exon            83..155
                     /gene="Sdcbp2"
                     /inference="alignment:Splign:2.1.0"
     CDS             102..980
                     /gene="Sdcbp2"
                     /note="syndecan-binding protein 2"
                     /codon_start=1
                     /product="syntenin-2"
                     /protein_id="NP_663510.1"
                     /db_xref="CCDS:CCDS16870.1"
                     /db_xref="GeneID:228765"
                     /db_xref="MGI:MGI:2385156"
                     /translation="MSVLYPSLEDLKVGQVIQAQGRASPTMPTLPAPMASAPPLSELY
                     PNLAELESYMGLSLSSQEVQKNLTQIPDSDNMVVTSPGPGQVVAPVSGNNLGILRAEI
                     KPGVREIHLCKDERGKTGLRLQAVDKGLFVQLVQANTPASLVGLRFGDQILQIDGCDC
                     AGWNTHKAHKVLKKASAEKIVMVIRDRPFQRTVTMHKDSSGQVGFSIKKGKIVSVVKG
                     SSAARNGLLTNHYVCEVNGQNVIGLKDKKVTEILTTAGDVITLTIIPTVIYEHMIKRL
                     SPLLLHHTMDHSIPDT"
     exon            156..225
                     /gene="Sdcbp2"
                     /inference="alignment:Splign:2.1.0"
     exon            226..326
                     /gene="Sdcbp2"
                     /inference="alignment:Splign:2.1.0"
     exon            327..485
                     /gene="Sdcbp2"
                     /inference="alignment:Splign:2.1.0"
     exon            486..661
                     /gene="Sdcbp2"
                     /inference="alignment:Splign:2.1.0"
     exon            662..833
                     /gene="Sdcbp2"
                     /inference="alignment:Splign:2.1.0"
     exon            834..925
                     /gene="Sdcbp2"
                     /inference="alignment:Splign:2.1.0"
     exon            926..1398
                     /gene="Sdcbp2"
                     /inference="alignment:Splign:2.1.0"
     regulatory      1375..1380
                     /regulatory_class="polyA_signal_sequence"
                     /gene="Sdcbp2"
                     /note="hexamer: AATAAA"
     polyA_site      1398
                     /gene="Sdcbp2"
                     /note="major polyA site"
ORIGIN      
        1 gaacccaact gggacacagg cgaccagcac atgccaggag gctgcagtgg ctggagaaga
       61 ggacagcgtg cggagccagc agtgtgtttc cagaggcagc tatgtctgtc ctgtatccgt
      121 ctctggagga tctgaaggtg ggccaagtca tccaggccca gggcagagcc tcacccacga
      181 tgccaactct gccagccccg atggcttctg cacccccact ttcagagttg tatccaaacc
      241 tggcagaact ggaaagttat atgggactgt ccctctctag ccaagaagtt cagaagaacc
      301 tgactcagat tccagatagt gacaatatgg tggtcactag ccctggacct ggccaggtgg
      361 tagctccagt atctgggaac aacctgggta tactgcgtgc agagatcaag cctggcgtgc
      421 gagagatcca cctgtgcaag gatgaacgtg gcaagactgg acttcgcctg caggctgttg
      481 acaaggggct ctttgtgcag ctggtccagg ccaacacccc tgcatccctt gtgggtttgc
      541 gctttgggga ccagatcctg caaattgatg gctgtgactg tgctgggtgg aacacacaca
      601 aagctcacaa ggtgttgaag aaggcatcag cggagaagat tgtcatggtt attcgggaca
      661 ggccattcca gaggactgtc accatgcaca aagacagctc agggcaagtt ggcttttcca
      721 tcaaaaaggg gaagatcgtg tctgtggtaa agggaagctc cgccgcccgc aatggacttc
      781 taaccaacca ctatgtgtgt gaggtgaacg gacagaacgt cattgggcta aaggacaaaa
      841 aggttactga gattctgacc acagctggag atgtcatcac actgaccatt attcccactg
      901 tgatctacga gcatatgatc aaaaggttgt ccccgttgct gcttcaccac accatggacc
      961 actccattcc agacacctga agttccagga gggcagcgca ggcttcccgc catcctgcag
     1021 ggaagacagc agtcctcaga tgacaggttg cagctggctt gctgcctggg tattgcaggg
     1081 atgtgtccca ggtgatgtat attgagtctg tcattgccga ttttaggcct ccttggatcc
     1141 tgacttctag ctgtgctgag gcacagactt gggacctggt tctctgtgcc ctagatgctg
     1201 ggcacttagg cagaacagca gaatgtcact aagtgctgct gcatcctttt gcagaccttg
     1261 cctcatctag gcagtcagac gcttgattgg acagaggaat gccttgtgtg ttgtcttcgt
     1321 caatctttgt cacaggctat gtacagacta atggtaaccc ttcactgtct tttgaataaa
     1381 gagtggattt aaaacccaaa aaaaaaaaaa aa
//
