LOCUS       XM_036163936            4805 bp    mRNA    linear   ROD 07-FEB-2024
DEFINITION  PREDICTED: Mus musculus syndecan 3 (Sdc3), transcript variant X4,
            mRNA.
ACCESSION   XM_036163936
VERSION     XM_036163936.1
DBLINK      BioProject: PRJNA169
KEYWORDS    RefSeq.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_000070.7) annotated using gene prediction method: Gnomon,
            supported by mRNA and EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_000001635.27-RS_2024_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.2
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           RefSeqFE; cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/01/2024
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4805
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6J"
                     /db_xref="taxon:10090"
                     /chromosome="4"
     gene            1..4805
                     /gene="Sdc3"
                     /gene_synonym="mKIAA0468; syn-3; Synd3"
                     /note="syndecan 3; Derived by automated computational
                     analysis using gene prediction method: Gnomon. Supporting
                     evidence includes similarity to: 26 mRNAs, 15 ESTs, 3725
                     long SRA reads, and 100% coverage of the annotated genomic
                     feature by RNAseq alignments, including 11 samples with
                     support for all annotated introns"
                     /db_xref="GeneID:20970"
                     /db_xref="MGI:MGI:1349163"
     CDS             250..1296
                     /gene="Sdc3"
                     /gene_synonym="mKIAA0468; syn-3; Synd3"
                     /codon_start=1
                     /product="syndecan-3 isoform X3"
                     /protein_id="XP_036019829.1"
                     /db_xref="GeneID:20970"
                     /db_xref="MGI:MGI:1349163"
                     /translation="MRFIPDMALAAPTAPAMLPTTVIQPVDTPFEELLSEHPSPEPVT
                     SPPLVTEVTEVVEESSQKATTISTTTSTTAATTTGAPTMATAPATAATTAPSTPEAPP
                     ATATVADVRTTGIQGMLPLPLTTAATAKITTPAAPSPPTTVATLDTEAPTPRLVNTAT
                     SRPRALPRPVTTQEPDVAERSTLPLGTTAPGPTEMAQTPTPESLLTTIQDEPEVPVSG
                     GPSGDFELQEETTQPDTANEVVAVEGAAAKPSPPLGTLPKGARPGPGLHDNAIDSGSS
                     AAQLPQKSILERKEVLVAVIVGGVVGALFAAFLVTLLIYRMKKKDEGSYTLEEPKQAS
                     VTYQKPDKQEEFYA"
ORIGIN      
        1 aagggtctgg gagcagtctt agtagaaggg atgtggtagt tttgtctttg ggctgcagag
       61 taggtggagg ccagagcact caaggtcctt gaaggcaggg ctcaacgctg gcgcaatgag
      121 aacttcgaga ggccggtgga tcttgagggc tcaggggatg acgactcgtt tcctgatgat
      181 gaactagacg acctctactc ggggtcaggc tctggctact tcgagcagga gtccggcctt
      241 gagacggcca tgcggttcat ccctgatatg gccctggctg cgcccactgc acctgccatg
      301 ctacccacaa ccgttatcca gcccgtggac accccatttg aggaactcct ttctgagcac
      361 cccagccctg aaccagtcac cagtcccccg ctggtgacag aggtgacaga ggtcgtagaa
      421 gagtccagcc agaaagctac caccatctct accaccacat ctaccaccgc ggccaccacc
      481 acaggggccc caactatggc cacagcacct gccacagcag ccaccactgc ccctagcact
      541 cccgaggcgc cccctgccac ggctaccgtg gctgacgtaa ggaccaccgg catacagggg
      601 atgctgcctc ttcccctgac cacagctgcc acagccaaga tcactacccc agcagcaccc
      661 tcaccaccca ctactgtggc taccttggac acagaggccc cgacacctag gctggtcaac
      721 acagctacct cgaggccacg agcccttcct cggccagtca ccacccagga gcctgatgtt
      781 gctgagagga gtaccctgcc gttggggacc acggctcctg gacccacgga gatggctcag
      841 accccaactc cagagtccct tctgaccacc atccaggatg agccagaggt gccagtaagt
      901 ggggggccca gcggggactt tgagcttcaa gaagagacca cgcagccgga cacggccaat
      961 gaggtggtgg ctgtggaagg agccgcggcc aagccgtcac ctccactggg gacactgccc
     1021 aagggtgccc gcccaggccc tggcctccac gacaatgcca tcgattcggg cagctcggcc
     1081 gcccagctcc ctcagaagag catactggag cggaaggagg tgctcgtagc cgtgatcgtg
     1141 ggtggggtgg tgggcgccct cttcgctgcc ttcctggtca cgctgctcat ctaccgcatg
     1201 aagaagaagg acgaaggcag ctacaccttg gaagaaccca agcaggcaag cgtcacgtac
     1261 cagaaacctg acaagcagga ggagttctac gcttagcaga gccacagtgc ctcctgcagc
     1321 ctccactccg cctcgcccag tccctggccc cagcagcagc ccaggcctga tcctgggcct
     1381 gggcctgggc ctgggatgga gcctggccct gcttctttct gctcaggctg ctagcgtaac
     1441 acagactgtc ctaaggagca gaggtgctgc catctgcccc agactgtgtc cttatgaccc
     1501 cttctttggt cccattccct ccagcccggg gcttcaggac cttgtgtccc atggacaaga
     1561 ggaaggaagc cctgggttgc tggttgaaac aggggcaggg gcagggttaa gatggcccac
     1621 agtgcttgct gatgtcctct tcttgctcca gaggccacca tgctggcttc tagaaccaat
     1681 aatacatggt acatctagcc ctccaattca aaatcaccca gatgctgtgg cctcgagctg
     1741 ctgtcccaag gcctctctct tgacaggagg gtgccctttg tcaccagcct gagctcatga
     1801 tggggtcacc gccccctccc cctgccaaat gcacaggtcc ccaggctgca cctcttcctg
     1861 cattgcctcc cagggaaagg gcttccttca gtgtacaggg cagccagtgg taagtgaggc
     1921 cagtctagca tccctcctga gaggggatgc cacatagcct ccgtcaacca ctactagaat
     1981 cctaaaatgc attcacacag gagacaaaaa catacccagt cctgaccacc cagccagcga
     2041 gacatcacac agatgcacca ccttcacgca gtgctcagcc atcctgatgc ttctgctaca
     2101 tcgtaggcca ctgtcattgt caccagtggc gaccacacca ccttcctccc aatctattct
     2161 ctttacacac attggtcctg catctggctc ctctaaccat ccaggtcact gaggaaggca
     2221 ggaccgagtt gtaggcatca gcccatattg ggtcccccag agtcactcta ttccacttgg
     2281 tccccaccat gacacctata ccagccacac tgatgctgat cccagctgac gtcagtcaca
     2341 agcccacaca gttaatgcag gctctccctc ccccactgtg gctcatagag aagtttgggg
     2401 ctagcctcca ccagccaagt ttgaagcaag aagggagcta gggcctccca ggaccaaggc
     2461 gctgtgtggg ttgtccctgg tctccatgta tctcctttct gctctgagcc aggagctgtc
     2521 tctgcctccc aggacacgtg tctccaaagt gcctgtgagg gtgggctccg cccaggccct
     2581 ctgtgtcccc tgccctgccc tggcctggtg aggccaacct caggcctacc taccctgggt
     2641 cctttctgtg gacacaactg accaggcaac ttggcagttc tggctatatc cagatgaacc
     2701 catagcccac caggctcatc ccaatgctat aggctctgag aatcattgat ggggacaagg
     2761 gtgtcacagg cctcaagtct accatcctgt ctctgttatc cttagaagtg gggctatttc
     2821 agaggtattt aaaatgtggg gggtcaccat tctctttgtg aaagggccat gccgaaggag
     2881 ctctcagcac caaagggaca cagcttgggt agtgactggc cggcacccct ccaccatctc
     2941 tcacatgtcc caggttcagt caggtgacca catggtttct ttctgtttca ttttaaagaa
     3001 tccctgacag cagagttggg cagactgaag aaccacatct gggtaatgga caggatctag
     3061 gcagttggca cagcttgtct ttctggggtg ggggtggagg gggtgtcccc ctgtcaggct
     3121 ctgttctgtc ttccagacct ccatgactcc cttgatggga ctttagagtt ttgtaagcca
     3181 gtcggcctgg tctttaagtg ggggggaagg aatgagaggc gtcctaaacc catgagatgt
     3241 ggaggaggga gcttggccaa gatcttccct gcagcagggg ctgggtaggg cgtagaggag
     3301 agccagtgtc ccagaccctc ccactcctcc ctggtaagct gcagtcttgg ggactagagc
     3361 tttggaaaga gaggctcagc agctgggcga ggcaacctcc aggtactcag cccaagggga
     3421 caccacgacc agggcaggag gccccagctt ctgtgttggg ctagggttca cttctcacat
     3481 ctcagggtgg ctctggccct ggggctatgg gtttggcatc ctgataccag catccttaat
     3541 gtgtcagcat ctgagagaag aggcagtggg tcttaagtat ggggtccggg ctccaaggcc
     3601 aacgcctagg cttcatggcc atggcgtttg acctgaaggt taatggtgtg agcagcccag
     3661 ataaactggg ctagcctggt gaggccagga cgatttaaga gaactcagtt ccaagggtga
     3721 actgaattct tcctagtgca atgtgggtgc ggggttccca ccctgcccca gaaacagtgc
     3781 ggtacataca gagcctgtcc aaaggagtcc agagacacct cagtgctcct gggaaggtat
     3841 tcaggacacc ggcttgcctg gagacacaat gcattctgaa tcagaggtgg tgatgtgtcc
     3901 tggacttctc tgggccctgg tttccctaga gagtaagaca tgctggggcc agagcactga
     3961 agagctaagc ttcatctctc ttgggggcca gactagggac tctatgtgta aggttgattc
     4021 tccttgattg ccagaggcat gtgggtgaca gccaggactg gctgagcaga tctgcagcaa
     4081 gagcttagga tgctggggcc agaccccctg ggcttggctt agctactcat caggcctcct
     4141 ggctggggct cgagcttcag agagcagagc caacgctgct ctcagggcag ttgtggctcc
     4201 ctgggctgtc ctggctttct cctgggatgt gcctcccagc cttggtgtct gtaaatagaa
     4261 gcccacactg tacagatcta cagagaggcc caaactgggc tctggtgtca ccatctgagg
     4321 ggctgatggc ctggcttccc ccaggtgccc tgtgggtgct tgggtatgcc tggccccggc
     4381 gtggtgaatg catgtaaata cttcgtagac agtgtggctc cagagagccc cctgagacag
     4441 tgtccccccc accttactgg ttcatcctct ctcctgtaca gagccctccc agcccctggg
     4501 ccaccaggat caggggttac ctcccttccc cagacctttc ctacccgttc tctccctata
     4561 acctgtttat taaccaaccc tgtcctgagt tcatggccaa aacttaaata agagaaggag
     4621 gagagggtca gatggataaa gataaagata ccaaggcctg gtccatcctt accatgggcg
     4681 ctcgtacacc cctggcttgg gaaggacagg gcttgctttg ttttgttttc tgttagtttt
     4741 tgttttttaa catttccctg tgctgtgccc atttataaga ggaaataaaa ttaagctgaa
     4801 agatg
//
