LOCUS       XM_006520239            5539 bp    mRNA    linear   ROD 07-FEB-2024
DEFINITION  PREDICTED: Mus musculus scribbled planar cell polarity (Scrib),
            transcript variant X2, mRNA.
ACCESSION   XM_006520239
VERSION     XM_006520239.5
DBLINK      BioProject: PRJNA169
KEYWORDS    RefSeq.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_000081.7) annotated using gene prediction method: Gnomon,
            supported by mRNA and EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            On Sep 21, 2020 this sequence version replaced XM_006520239.4.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_000001635.27-RS_2024_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.2
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           RefSeqFE; cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/01/2024
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5539
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6J"
                     /db_xref="taxon:10090"
                     /chromosome="15"
     gene            1..5539
                     /gene="Scrib"
                     /gene_synonym="Crc; CRIB; mKIAA0147; Scrb1; SCRIB1;
                     vartul"
                     /note="scribbled planar cell polarity; Derived by
                     automated computational analysis using gene prediction
                     method: Gnomon. Supporting evidence includes similarity
                     to: 1 mRNA, 93 ESTs, 327 long SRA reads, 7 Proteins, and
                     100% coverage of the annotated genomic feature by RNAseq
                     alignments, including 42 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:105782"
                     /db_xref="MGI:MGI:2145950"
     CDS             375..5309
                     /gene="Scrib"
                     /gene_synonym="Crc; CRIB; mKIAA0147; Scrb1; SCRIB1;
                     vartul"
                     /codon_start=1
                     /product="protein scribble homolog isoform X2"
                     /protein_id="XP_006520302.1"
                     /db_xref="GeneID:105782"
                     /db_xref="MGI:MGI:2145950"
                     /translation="MLKCIPLWRCNRHVESVDKRHCSLQVVPEEIYRYSRSLEELLLD
                     ANQLRELPKPFFRLLNLRKLGLSDNEIQRLPPEVANFMQLVELDVSRNDIPEIPESIK
                     FCKALEIADFSGNPLSRLPDGFTQLRSLAHLALNDVSLQALPGDVGNLANLVTLELRE
                     NLLKSLPASLSFLVKLEQLDLGGNDLEVLPDTLGALPNLRELWLDRNQLSALPPELGN
                     LRRLVCLDVSENRLEELPVELGGLALLTDLLLSQNLLQRLPEGIGQLKQLSILKVDQN
                     RLCEVTEAIGDCENLSELILTENLLTALPHSLGKLTKLTNLNVDRNHLEVLPPEIGGC
                     VALSVLSLRDNRLAVLPPELAHTAELHVLDVAGNRLRSLPFALTHLNLKALWLAENQA
                     QPMLRFQTEDDAQTGEKVLTCYLLPQQPLPSLEDAGQQSSPSESCSDAPLSRVSVIQF
                     EDTLEGEEDAEEAAAEKRGLQRRATPHPSELKVMKRGIEERRNEAFVCKPDPSPPSPS
                     EEEKRLSAESALSGGSVPSASTASEGEPEILPAEVQGLGQHEAMPAQEEYTEDDYNEP
                     TVHFAEDTLIPREDGESEEGQPEAAWPLPSGRQRLIRKDTPHYKKHFKISKLPQPEAV
                     VALLQGVQTDREGPTAGWHNGPHTPWAPRAHEEEEEEEEENRDEEEGEATTEEDDKEE
                     AVASAPSVKLTLTIVRQTGGLGISIAGGKGSTPYKGDDEGIFISRVSEEGPAARAGVR
                     VGDKLLEVNGVALQDAEHHEAVEALRGAGAAVQMRVWRERMVEPENAVTITPLRPEDD
                     YSPREWRGGGLRLPLLQPETPVSLRQRHAACLVRSEKGLGFSIAGGKGSTPYRAGDGG
                     IFISRIAEGGAAHRAGTLQVGDRVLSINGVDMTEARHDHAVSLLTAASPTISLLLERE
                     TGGTYPPSPPPHSSPTPAATVAATVSTAVPGEPLLPRLSPSLLATALEGPYPVEEICL
                     PRAGGPLGLSIVGGSDHSSHPFGVQDPGVFISKVLPRGLAARCGLRVGDRILAVNGQD
                     VREATHQEAVSALLRPCLELCLLVRRDPPPPGMRELCIQKAPGEKLGISIRGGAKGHA
                     GNPCDPTDEGIFISKVSPTGAAGRDGRLRVGLRLLEVNQQSLLGLTHAEAVQLLRSVG
                     DTLTVLVCDGFDTSTTTALEVSPGVIANPFAAGLGHRNSLESISSIDRELSPEGPGKE
                     KELASQALPWESESAETTGRNLEPLKLDYRALAALPSAGSLQRGPSATTGGKTTEAPC
                     SPGSQQTKPGVIQPLAQAWPRNSPAPRGRGGPCSPPSPDELPANVKQAYRAFAAVPTV
                     HPPENSATQPPTPGPAASPEQLSFRERQKYFELEVRVPQAEGPPKRVSLVGADDLRKM
                     QEEEARKLQQKRAQMLREEAVTSGPDMGLASDRESPDDQQEAEQPWAVPSHAGGSSPS
                     SPPPLGGNAPVRTAKAERRHQERLRMQSPELPAPERALSPAERRALEAEKRALWRAAR
                     MKSLEQDALRAQMVLSKSQEGRGKRGPLERLAEAPSPAPTPSPTPLEDFGLQTSASPG
                     RLPLSGKKFDYRAFAALPSSRPVYDIQSPDFVEELRTLEASPSPGSQEEDGEVALVLL
                     GRPSPGAVGPEDMTLCSSRRSVRPGRRGLGPVPS"
ORIGIN      
        1 tcccggcggg ctgcgcggct gggcggttgt cgcgggcagc ggcggcggtt ccggctgcgg
       61 tgctgcgggc ggatgagctg ctaggtgagc aggccgggcg ggatgcggag ccgccgccgc
      121 gcccccagcg cctaagaaag cgctgccggg tcaggccgtg ctgccagctg tgtgccgccg
      181 tcggagccta cagctcgtat tgaacgcggg ccgagccgag cgccgacccc ggccacagtc
      241 cgggacccgg ctgcccgccc cacccccgcg cgcgccgctc cgcccgcgct cggcgctcat
      301 gcgggccgag ccccgccccc cggcccgagc ccgccgagcg cctcccgagc ccgcgctcac
      361 tgcccgcccg catcatgctg aagtgcatcc cgctctggcg ttgtaaccgg cacgtggagt
      421 cggtggataa gcggcactgc tcgctgcagg ttgtgccaga ggagatttac cgctacagtc
      481 gtagcctcga ggagctgctc ctcgacgcca accagctgcg cgagctacct aagcccttct
      541 tccgactgtt gaacttgaga aagttgggcc tcagtgacaa cgagatccag cggctgcctc
      601 ctgaagtggc caacttcatg cagctggtgg agctagatgt gtcccggaac gatattcctg
      661 agatacctga gagcataaag ttctgtaagg ctctggagat tgcagacttc agtgggaacc
      721 ccctgtctag acttccggat ggcttcacac agctacgcag cctggctcac ctggccctga
      781 atgacgtgtc cctgcaggca ctgcctggag atgtgggcaa cctggccaat ctggtgaccc
      841 tggaactccg ggagaacctg cttaaatctc tccctgcgtc cctgtctttc ctggtgaagc
      901 tggaacagct ggatctggga ggcaacgacc tggaagtgct gcctgacacc ctgggggctc
      961 tgcctaacct tcgggagcta tggttagacc gaaaccaact gtcagcgctg cccccggagc
     1021 taggcaatct gcggcggctg gtgtgcctgg atgtgtcaga gaacaggctg gaggagctgc
     1081 ctgtggagtt gggtgggctg gcactgctca cggatctgct gctttcccag aacttgcttc
     1141 agcggctgcc agagggcatc ggtcagctga agcagctgtc tatcctgaag gtggaccaga
     1201 accggctgtg tgaggtcact gaggccatag gggactgtga gaacctctcg gagctgatcc
     1261 tcacggagaa cctgttaacg gccttacccc actcgctggg caagctgacc aagctgacta
     1321 acctcaatgt ggaccggaac catcttgagg tgctgcctcc tgaaatcgga ggctgtgtgg
     1381 cccttagtgt cctctctttg agagacaatc gcctggctgt cctccctcct gagcttgccc
     1441 ataccgctga gctgcacgtg cttgatgtgg ctgggaaccg gctgcggagt ctgccgtttg
     1501 cgctcaccca cctcaacctc aaggcactgt ggctggccga gaaccaggca cagcccatgc
     1561 tccgcttcca gactgaggat gatgcccaga cgggtgaaaa ggtgctcacc tgctacctgc
     1621 tgccccagca gcccctgcca agtctcgaag acgctggaca gcagagcagt ccctcagaga
     1681 gctgtagtga tgcccctctg agccgtgtca gtgtcatcca gttcgaggac accctggaag
     1741 gtgaagagga tgctgaggaa gctgcggccg agaagcgggg cctacagcgt agggccacac
     1801 ctcatcccag tgagctcaag gtgatgaaga ggggcattga agagcgccgg aatgaggcct
     1861 tcgtctgcaa gcctgacccc agcccaccct cgccttcaga ggaggagaag aggctgagtg
     1921 cagagtctgc cttgagtgga ggctctgtcc cgtcagcaag cacagcctcg gaaggtgagc
     1981 ctgagatcct gccggctgag gtacaagggc taggccagca tgaggccatg cctgcacagg
     2041 aggagtatac agaagacgac tataacgagc ccacagtgca ctttgcagag gacacactga
     2101 tccctaggga agacggtgaa agtgaagagg gacagcctga ggctgcctgg ccgctgccta
     2161 gtggccggca gaggctcatc cgcaaagaca cgccccacta caagaagcac ttcaagatct
     2221 ccaagctccc acagcctgaa gctgtcgtgg ccctgctgca aggggtgcag accgacaggg
     2281 agggccccac tgcaggttgg cacaatggcc cacacacacc ttgggctcct cgagcccatg
     2341 aggaggaaga ggaggaggag gaggagaaca gggatgagga ggaaggcgag gccaccacgg
     2401 aagaagatga caaagaagag gctgtggctt ctgctccctc tgtcaagtta acactcacga
     2461 tcgtgcggca gacggggggc ctgggcatca gtatcgcagg gggaaaaggc tctaccccct
     2521 acaaaggaga tgacgagggc attttcatct ctcgagtgtc tgaagagggc cctgcagccc
     2581 gtgctggagt ccgagttggt gacaaacttc ttgaggtgaa tggtgtagcc ttgcaggacg
     2641 cagagcacca cgaggccgtg gaagcacttc ggggggcagg tgctgctgtg cagatgcgag
     2701 tgtggaggga aagaatggtg gagccggaga acgcagtcac tattaccccc ttacgccctg
     2761 aagatgacta tagtccccga gagtggcggg gaggtggcct gcgccttccc ctgctccagc
     2821 ctgagactcc tgtatccctc cgtcagcgtc atgctgcctg tctcgtgcgc agtgaaaagg
     2881 ggctgggctt cagcattgct ggtggaaagg gctccacacc ttaccgggct ggtgatgggg
     2941 gcatctttat atcccgcatt gcagagggag gggctgctca ccgggcaggc actctacagg
     3001 ttggcgaccg tgtcctctcg atcaatggag tggacatgac tgaggccagg cacgaccatg
     3061 ctgtctccct gctgactgct gcttccccta ccatctccct gcttctggag agggagactg
     3121 gagggactta cccacctagc cctccccccc attcctcccc aacccctgct gctactgttg
     3181 ctgctaccgt gagcactgct gtccccggag aacctctgct acctaggctg tcccctagcc
     3241 tcttggccac tgccttggaa ggaccatacc ctgtggagga aatctgcctg cccagggctg
     3301 gtggcccatt ggggcttagc attgtaggag gttctgatca ctccagccac ccgtttggtg
     3361 tccaagatcc tggtgtattc atctccaagg tgcttcctcg gggcctagct gctcgctgtg
     3421 gccttcgggt tggggaccgc atcctagcag tgaatgggca ggatgttcgg gaggccacac
     3481 atcaagaggc agtcagtgcc ctgctcaggc cctgcctgga gctgtgtctg cttgtgcgga
     3541 gggacccacc acccccgggc atgcgggaac tctgcatcca gaaagcccct ggggagaagc
     3601 tgggtatcag catccgcgga ggtgccaagg gtcacgcggg gaacccctgt gaccctacag
     3661 atgagggcat ctttatctcc aaggtgagcc ccacaggagc tgccgggcgt gatgggcggc
     3721 tgcgtgtggg gctgcggctg ctagaagtga accaacagag cctgctgggc cttacccatg
     3781 cggaagcagt gcagctgctg cgcagcgtag gcgacaccct taccgtgctt gtctgtgatg
     3841 gttttgacac cagcaccacc acagccctgg aggtgtcccc aggtgtcatt gccaacccat
     3901 ttgcagcagg ccttggccac aggaacagtc tggaaagcat ttcgtccatt gaccgggaac
     3961 tgagtcctga aggcccaggc aaggagaaag agttggccag tcaagcccta ccctgggagt
     4021 ctgagtctgc agagaccacg ggtcggaatc tagagcccct gaagctggac taccgtgccc
     4081 tggccgccct gcccagtgct gggagtttac agagaggacc atctgcgacc accggaggga
     4141 agacgactga ggctccctgt tcccctggca gtcagcaaac aaaaccgggg gtgatccagc
     4201 cattggctca ggcctggcca aggaactccc cggcccccag gggcagaggt ggtccctgtt
     4261 ctccaccctc ccctgatgaa ctgccagcca atgtgaagca ggcgtatagg gcctttgcag
     4321 ctgtgcccac cgtgcatcct cctgagaaca gtgctaccca gcctccaaca cctggtcccg
     4381 cagcctcccc agagcagctg tccttccgtg aacgacaaaa gtacttcgag ctggaggtac
     4441 gggtgcctca agcagagggt cccccaaagc gtgtgtccct ggtgggtgct gatgacttgc
     4501 ggaagatgca agaggaggaa gctcgcaagc tgcagcagaa gagggcacag atgcttcggg
     4561 aagaagcagt aacctcaggg cctgacatgg ggctcgcctc agacagggag tccccagatg
     4621 atcagcagga ggctgagcag ccctgggctg tgccaagcca tgcagggggc tctagcccat
     4681 catcaccccc acccctggga ggcaacgccc ctgtgaggac agccaaagct gagcgacgcc
     4741 atcaggaacg gttacgcatg cagagccccg agcttcctgc cccggaacgg gccctgtctc
     4801 ctgcagagcg acgggctcta gaggcagaga agcgagctct gtggagggca gccagaatga
     4861 agtctctgga gcaggatgct ctccgtgcac agatggtcct tagcaagtcc caggaaggcc
     4921 gtggcaagag aggacccttg gaacggctgg ctgaggcccc ttcacctgcc cccaccccat
     4981 cacccacacc attggaagac ttcggcctcc agaccagtgc ctcccctgga cgcttgcctt
     5041 tgtctggaaa gaagtttgac tacagggcct tcgcagccct gccctcttcc agacctgtgt
     5101 atgacatcca gtcaccagat ttcgtggagg agctgaggac tttggaagca tctcccagtc
     5161 ctggctccca ggaagaagat ggagaagtgg ccttggtgct ccttggcagg ccctcacctg
     5221 gcgctgtggg ccctgaagac atgacgctgt gcagcagccg tcggtctgtg cggccgggac
     5281 gccggggcct gggccctgtg ccctcctagg gccaggtgcc tccccagact tagggtggga
     5341 gcctgccagc ttcatcacct cccttatccc aagtctgtta gccttggtgt tagcatttta
     5401 aagagacccc tcaggagttc tggcttctga ttaactgccc cgtagccggg atctcgtggc
     5461 gagactgtaa ctagtgatgt ttgtacaacc aaagactcta ttttgtggtt taagaagaat
     5521 aaagttacct acgttttac
//
