LOCUS       NM_001374206            1855 bp    mRNA    linear   ROD 07-AUG-2023
DEFINITION  Mus musculus Scm polycomb group protein like 1 (Scml1), transcript
            variant 3, mRNA.
ACCESSION   NM_001374206
VERSION     NM_001374206.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE   1  (bases 1 to 1855)
  AUTHORS   Papanikos F, Daniel K, Goercharn-Ramlal A, Fei JF, Kurth T, Wojtasz
            L, Dereli I, Fu J, Penninger J, Habermann B, Surani A, Stewart AF
            and Toth A.
  TITLE     The enigmatic meiotic dense body and its newly discovered
            component, SCML1, are dispensable for fertility and gametogenesis
            in mice
  JOURNAL   Chromosoma 126 (3), 399-415 (2017)
   PUBMED   27165042
  REMARK    GeneRIF: Despite abolished dense body formation, Scml1-deficient
            mice are fertile and proficient in sex body formation, transposon
            silencing and in timely progression through meiosis and
            gametogenesis.
REFERENCE   2  (bases 1 to 1855)
  AUTHORS   Harrow JL, Steward CA, Frankish A, Gilbert JG, Gonzalez JM,
            Loveland JE, Mudge J, Sheppard D, Thomas M, Trevanion S and Wilming
            LG.
  TITLE     The Vertebrate Genome Annotation browser 10 years on
  JOURNAL   Nucleic Acids Res 42 (Database issue), D771-D779 (2014)
   PUBMED   24316575
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            AL732391.7.
            
            Sequence Note: The RefSeq transcript and protein were derived from
            genomic sequence to make the sequence consistent with the reference
            genome assembly. The genomic coordinates used for the transcript
            record were based on alignments.
            
            ##Evidence-Data-START##
            Transcript exon combination :: SRR5189685.147453.1 [ECO:0000332]
            RNAseq introns              :: partial sample support SAMN00849384,
                                           SAMN01164142 [ECO:0000350]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on expression
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-97                AL732391.7         84475-84571         c
            98-130              AL732391.7         81308-81340         c
            131-265             AL732391.7         80061-80195         c
            266-349             AL732391.7         77742-77825         c
            350-454             AL732391.7         73745-73849         c
            455-1469            AL732391.7         71602-72616         c
            1470-1855           AL732391.7         69938-70323         c
FEATURES             Location/Qualifiers
     source          1..1855
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6"
                     /db_xref="taxon:10090"
                     /chromosome="X"
                     /map="X 74.15 cM"
     gene            1..1855
                     /gene="Scml1"
                     /gene_synonym="Gm1792; Gm47"
                     /note="Scm polycomb group protein like 1"
                     /db_xref="GeneID:195726"
                     /db_xref="MGI:MGI:2684893"
     exon            1..97
                     /gene="Scml1"
                     /gene_synonym="Gm1792; Gm47"
                     /inference="alignment:Splign:2.1.0"
     exon            98..130
                     /gene="Scml1"
                     /gene_synonym="Gm1792; Gm47"
                     /inference="alignment:Splign:2.1.0"
     exon            131..265
                     /gene="Scml1"
                     /gene_synonym="Gm1792; Gm47"
                     /inference="alignment:Splign:2.1.0"
     CDS             239..1663
                     /gene="Scml1"
                     /gene_synonym="Gm1792; Gm47"
                     /note="isoform 2 is encoded by transcript variant 3; Vsex
                     comb on midleg-like 1"
                     /codon_start=1
                     /product="sex comb on midleg-like protein 1 isoform 2"
                     /protein_id="NP_001361135.1"
                     /db_xref="GeneID:195726"
                     /db_xref="MGI:MGI:2684893"
                     /translation="MSATGEEDGNILHPPEIHEIQEIEGPQAIETLLNYCQIIFKTVQ
                     RMEKRFNEIDEKLTKVYYARSRSFWNYPPLKSATRKYNYLTPKKRRKVQKVREVVDDD
                     PFAYPQSYSPTSPVRRREGYNQDMENIEPMDCTLPFQYTDTIDNSQTFQYTDTIDNSQ
                     TFQYTDTVDLSQTVQYTDTVDLNQTVQYTDTVDLNQTVQYTDTVDLSQTLQNTDTVDL
                     SQTVQYTDTVDLNQTVQYTDTVDLNQTVQNTDTVDLSQTLQNTDTVDLSQTLQNTDTV
                     NNAQPFQYTNTVNNTVGIQNTENNDVFHSENSQEAVLVRSSLERDYQETPPSPTYTTE
                     SYEQYYRLRNVPGSSTMPFYSDIEIPNMDTITSAPSTSREASTLPPGELIPIRNPEMR
                     RRAFLEALLTPVIDPNTFGSSSECTRTVVRHLGYPVNWSVNDVITFLNRLDPPLADQL
                     YPTIKKHVMYFFKSSFSAYPNAIE"
     exon            266..349
                     /gene="Scml1"
                     /gene_synonym="Gm1792; Gm47"
                     /inference="alignment:Splign:2.1.0"
     exon            350..454
                     /gene="Scml1"
                     /gene_synonym="Gm1792; Gm47"
                     /inference="alignment:Splign:2.1.0"
     exon            455..1469
                     /gene="Scml1"
                     /gene_synonym="Gm1792; Gm47"
                     /inference="alignment:Splign:2.1.0"
     exon            1470..1855
                     /gene="Scml1"
                     /gene_synonym="Gm1792; Gm47"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 aacggtcacc tagaacgtct acatggatgc ctgacgctag ctggtagatt tccggaaact
       61 tccagaagct tgtgtggtcg attcttcatc taaatacgtt gcaattgtga ggttcatcct
      121 tgtaaccgaa gagtagaaga tttgcctcgt ggaggactaa tcagtaaacc ttccagcaag
      181 tctaacagta ataggctcaa ctcagaggaa gtggagtctc tcctattgca caaaaattat
      241 gtctgccact ggtgaagagg atgggaacat acttcatcca cctgaaattc atgaaattca
      301 agaaattgaa ggaccacaag caattgaaac tctcctgaac tattgtcaga ttatatttaa
      361 aactgttcaa cgaatggaaa aaaggtttaa tgaaattgat gaaaaactaa caaaagttta
      421 ttatgctcgt tccagatcct tctggaatta tcctcctttg aaatctgcaa ccagaaagta
      481 caattacttg acgcctaaaa aaagacgtaa agtgcagaaa gtgagagaag tagttgatga
      541 tgatcccttt gcctatcctc aaagttacag tccaacttca ccagtccgca ggagggaagg
      601 atataaccag gatatggaaa acatcgagcc catggactgc actctgcctt tccagtacac
      661 tgatactatt gacaacagcc agactttcca gtacaccgat actattgaca acagccagac
      721 tttccagtac actgatactg tcgacctcag ccagactgtc cagtacaccg atactgtcga
      781 cctcaaccag actgtccagt acaccgatac tgtcgacctc aaccagactg tccagtatac
      841 cgatactgtc gacctcagcc agactctcca gaacaccgat acagtcgacc tcagccagac
      901 tgtccagtac accgatactg tcgacctcaa ccagactgtc cagtacaccg atactgtcga
      961 cctcaaccag actgtccaga acactgatac agtcgacctc agccagactc tccagaacac
     1021 cgatacagtc gacctcagcc agactctcca gaacactgat actgtcaata atgcccagcc
     1081 gttccagtac accaatactg tcaacaacac cgtgggtatc caaaacactg agaacaatga
     1141 tgttttccat tcagagaatt cccaggaagc agtattagtc agatcttcac tagagaggga
     1201 ctatcaagaa actccaccaa gtcctacata tactaccgaa agctatgagc aatattacag
     1261 actcagaaat gtacctggct cttctacgat gcccttctac agtgacatag aaattcccaa
     1321 tatggacacc atcacttctg ccccttcaac atcaagggaa gcaagtacac tccctccagg
     1381 ggaactcatc cccatacgaa atcctgaaat gaggcgaagg gccttcttgg aggctctgct
     1441 cacacctgtg attgatccta acacttttgg ttcatcctcc gagtgtaccc gtactgttgt
     1501 gagacacctt ggttaccctg taaactggtc tgtgaatgat gtaataacat ttctgaaccg
     1561 tttagatcct cctttggctg accaactcta ccctaccatc aaaaaacatg taatgtattt
     1621 ttttaaatct agtttctctg cttaccctaa tgctattgag tgacctttgt gcactttcat
     1681 ttggatactg agttacatgt aggccagggg aatcctatta tgggatttga tttttgtttg
     1741 tgaaaaaggt tagattgttc atcattatat gcttaaatgg ttggttaact gtctgactgt
     1801 atgttattca catgggcatc taagtatcta ataaactaag catcctcaaa tctca
//
