LOCUS       NM_001099742             451 bp    mRNA    linear   ROD 15-JUL-2024
DEFINITION  Mus musculus secretoglobin, family 1C, member 1 (Scgb1c1), mRNA.
ACCESSION   NM_001099742 XM_001480515 XM_001480591
VERSION     NM_001099742.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE   1  (bases 1 to 451)
  AUTHORS   Kim,S.D., Kang,S.A., Mun,S.J., Yu,H.S., Roh,H.J. and Cho,K.S.
  TITLE     SCGB1C1 Plays a Critical Role in Suppression of Allergic Airway
            Inflammation through the Induction of Regulatory T Cell Expansion
  JOURNAL   Int J Mol Sci 25 (11), 6282 (2024)
   PUBMED   38892470
  REMARK    GeneRIF: SCGB1C1 Plays a Critical Role in Suppression of Allergic
            Airway Inflammation through the Induction of Regulatory T Cell
            Expansion.
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 451)
  AUTHORS   Adams,D.J., Barlas,B., McIntyre,R.E., Salguero,I., van der
            Weyden,L., Barros,A., Vicente,J.R., Karimpour,N., Haider,A.,
            Ranzani,M., Turner,G., Thompson,N.A., Harle,V., Olvera-Leon,R.,
            Robles-Espinoza,C.D., Speak,A.O., Geisler,N., Weninger,W.J.,
            Geyer,S.H., Hewinson,J., Karp,N.A., Fu,B., Yang,F., Kozik,Z.,
            Choudhary,J., Yu,L., van Ruiten,M.S., Rowland,B.D., Lelliott,C.J.,
            Del Castillo Velasco-Herrera,M., Verstraten,R., Bruckner,L.,
            Henssen,A.G., Rooimans,M.A., de Lange,J., Mohun,T.J., Arends,M.J.,
            Kentistou,K.A., Coelho,P.A., Zhao,Y., Zecchini,H., Perry,J.R.B.,
            Jackson,S.P. and Balmus,G.
  CONSRTM   Sanger Mouse Genetics Project
  TITLE     Genetic determinants of micronucleus formation in vivo
  JOURNAL   Nature 627 (8002), 130-136 (2024)
   PUBMED   38355793
REFERENCE   3  (bases 1 to 451)
  AUTHORS   Young,J.M., Shykind,B.M., Lane,R.P., Tonnes-Priddy,L., Ross,J.A.,
            Walker,M., Williams,E.M. and Trask,B.J.
  TITLE     Odorant receptor expressed sequence tags demonstrate olfactory
            expression of over 400 genes, extensive alternate splicing and
            unequal expression levels
  JOURNAL   Genome Biol 4 (11), R71 (2003)
   PUBMED   14611657
REFERENCE   4  (bases 1 to 451)
  AUTHORS   Reynolds,S.D., Reynolds,P.R., Pryhuber,G.S., Finder,J.D. and
            Stripp,B.R.
  TITLE     Secretoglobins SCGB3A1 and SCGB3A2 define secretory cell subsets in
            mouse and human airways
  JOURNAL   Am J Respir Crit Care Med 166 (11), 1498-1509 (2002)
   PUBMED   12406855
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            BY000447.1, CB173308.1, AA462242.1 and CB174369.1.
            
            On or before Jul 26, 2007 this sequence version replaced
            XM_001480515.1, XM_001480591.1.
            
            ##Evidence-Data-START##
            Transcript exon combination :: BX527996.1, W82469.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMN00849374, SAMN00849381
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on single protein-coding transcript
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-67                BY000447.1         2-68
            68-267              CB173308.1         45-244
            268-424             AA462242.1         241-397
            425-451             CB174369.1         409-435
FEATURES             Location/Qualifiers
     source          1..451
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6"
                     /db_xref="taxon:10090"
                     /chromosome="7"
                     /map="7 86.04 cM"
     gene            1..451
                     /gene="Scgb1c1"
                     /gene_synonym="Ryd5"
                     /note="secretoglobin, family 1C, member 1"
                     /db_xref="GeneID:338417"
                     /db_xref="MGI:MGI:2655401"
     exon            1..67
                     /gene="Scgb1c1"
                     /gene_synonym="Ryd5"
                     /inference="alignment:Splign:2.1.0"
     CDS             13..300
                     /gene="Scgb1c1"
                     /gene_synonym="Ryd5"
                     /note="ligand binding protein RYD5; secretoglobin RYD5"
                     /codon_start=1
                     /product="secretoglobin family 1C member 1 precursor"
                     /protein_id="NP_001093212.1"
                     /db_xref="CCDS:CCDS40176.1"
                     /db_xref="GeneID:338417"
                     /db_xref="MGI:MGI:2655401"
                     /translation="MKGSSALLLVALSLLCVCGLTRAEDDNEFFMEFLQTLLVGTPEE
                     LYEGPLGKYNVNDMAKSALSELKSCIDELQPVHKEQLVKLLVQVLDAQEDT"
     exon            68..267
                     /gene="Scgb1c1"
                     /gene_synonym="Ryd5"
                     /inference="alignment:Splign:2.1.0"
     exon            268..437
                     /gene="Scgb1c1"
                     /gene_synonym="Ryd5"
                     /inference="alignment:Splign:2.1.0"
     regulatory      389..394
                     /regulatory_class="polyA_signal_sequence"
                     /gene="Scgb1c1"
                     /gene_synonym="Ryd5"
                     /note="hexamer: AATAAA"
     polyA_site      437
                     /gene="Scgb1c1"
                     /gene_synonym="Ryd5"
                     /note="major polyA site"
ORIGIN      
        1 gtgactgtca ccatgaaagg gagcagcgct cttctgctgg tggccctaag cctgctctgc
       61 gtctgtgggc tgactagagc agaggatgac aatgagtttt tcatggaatt cctgcaaaca
      121 ctcctggtgg ggaccccgga agaactctac gaagggcccc tgggcaagta caatgtcaat
      181 gacatggcca agtcagcgct gagcgagctc aagtcctgca tcgatgaact acagcctgtg
      241 cataaggagc aactggtcaa gctgctggtg caagtgctag atgctcaaga ggacacataa
      301 gcagacccga aacacggctt gacttccatg agcgacagga ccagccctac agcgaccatg
      361 gatgtgccgc gatcactgct tcttcacgaa taaattcacc ctcgaactgt taaatcaata
      421 aagcctactg cagcccaaaa aaaaaaaaaa a
//
