LOCUS       NM_001128146            3342 bp    mRNA    linear   ROD 30-APR-2024
DEFINITION  Mus musculus scavenger receptor family member expressed on T cells
            2 (Scart2), transcript variant 2, mRNA.
ACCESSION   NM_001128146
VERSION     NM_001128146.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE   1  (bases 1 to 3342)
  AUTHORS   Adams,D.J., Barlas,B., McIntyre,R.E., Salguero,I., van der
            Weyden,L., Barros,A., Vicente,J.R., Karimpour,N., Haider,A.,
            Ranzani,M., Turner,G., Thompson,N.A., Harle,V., Olvera-Leon,R.,
            Robles-Espinoza,C.D., Speak,A.O., Geisler,N., Weninger,W.J.,
            Geyer,S.H., Hewinson,J., Karp,N.A., Fu,B., Yang,F., Kozik,Z.,
            Choudhary,J., Yu,L., van Ruiten,M.S., Rowland,B.D., Lelliott,C.J.,
            Del Castillo Velasco-Herrera,M., Verstraten,R., Bruckner,L.,
            Henssen,A.G., Rooimans,M.A., de Lange,J., Mohun,T.J., Arends,M.J.,
            Kentistou,K.A., Coelho,P.A., Zhao,Y., Zecchini,H., Perry,J.R.B.,
            Jackson,S.P. and Balmus,G.
  CONSRTM   Sanger Mouse Genetics Project
  TITLE     Genetic determinants of micronucleus formation in vivo
  JOURNAL   Nature 627 (8002), 130-136 (2024)
   PUBMED   38355793
REFERENCE   2  (bases 1 to 3342)
  AUTHORS   Dickinson,M.E., Flenniken,A.M., Ji,X., Teboul,L., Wong,M.D.,
            White,J.K., Meehan,T.F., Weninger,W.J., Westerberg,H., Adissu,H.,
            Baker,C.N., Bower,L., Brown,J.M., Caddle,L.B., Chiani,F., Clary,D.,
            Cleak,J., Daly,M.J., Denegre,J.M., Doe,B., Dolan,M.E., Edie,S.M.,
            Fuchs,H., Gailus-Durner,V., Galli,A., Gambadoro,A., Gallegos,J.,
            Guo,S., Horner,N.R., Hsu,C.W., Johnson,S.J., Kalaga,S., Keith,L.C.,
            Lanoue,L., Lawson,T.N., Lek,M., Mark,M., Marschall,S., Mason,J.,
            McElwee,M.L., Newbigging,S., Nutter,L.M., Peterson,K.A.,
            Ramirez-Solis,R., Rowland,D.J., Ryder,E., Samocha,K.E.,
            Seavitt,J.R., Selloum,M., Szoke-Kovacs,Z., Tamura,M., Trainor,A.G.,
            Tudose,I., Wakana,S., Warren,J., Wendling,O., West,D.B., Wong,L.,
            Yoshiki,A., MacArthur,D.G., Tocchini-Valentini,G.P., Gao,X.,
            Flicek,P., Bradley,A., Skarnes,W.C., Justice,M.J., Parkinson,H.E.,
            Moore,M., Wells,S., Braun,R.E., Svenson,K.L., de Angelis,M.H.,
            Herault,Y., Mohun,T., Mallon,A.M., Henkelman,R.M., Brown,S.D.,
            Adams,D.J., Lloyd,K.C., McKerlie,C., Beaudet,A.L., Bucan,M. and
            Murray,S.A.
  CONSRTM   International Mouse Phenotyping Consortium; Jackson Laboratory;
            Infrastructure Nationale PHENOMIN, Institut Clinique de la Souris
            (ICS); Charles River Laboratories; MRC Harwell; Toronto Centre for
            Phenogenomics; Wellcome Trust Sanger Institute; RIKEN BioResource
            Center
  TITLE     High-throughput discovery of novel developmental phenotypes
  JOURNAL   Nature 537 (7621), 508-514 (2016)
   PUBMED   27626380
  REMARK    Erratum:[Nature. 2017 Nov 16;551(7680):398. PMID: 29144450]
REFERENCE   3  (bases 1 to 3342)
  AUTHORS   Koscielny,G., Yaikhom,G., Iyer,V., Meehan,T.F., Morgan,H.,
            Atienza-Herrero,J., Blake,A., Chen,C.K., Easty,R., Di Fenza,A.,
            Fiegel,T., Grifiths,M., Horne,A., Karp,N.A., Kurbatova,N.,
            Mason,J.C., Matthews,P., Oakley,D.J., Qazi,A., Regnart,J.,
            Retha,A., Santos,L.A., Sneddon,D.J., Warren,J., Westerberg,H.,
            Wilson,R.J., Melvin,D.G., Smedley,D., Brown,S.D., Flicek,P.,
            Skarnes,W.C., Mallon,A.M. and Parkinson,H.
  TITLE     The International Mouse Phenotyping Consortium Web Portal, a
            unified point of access for knockout mice and related phenotyping
            data
  JOURNAL   Nucleic Acids Res 42 (Database issue), D802-D809 (2014)
   PUBMED   24194600
REFERENCE   4  (bases 1 to 3342)
  AUTHORS   Kisielow,J., Kopf,M. and Karjalainen,K.
  TITLE     SCART scavenger receptors identify a novel subset of adult
            gammadelta T cells
  JOURNAL   J Immunol 181 (3), 1710-1716 (2008)
   PUBMED   18641307
  REMARK    GeneRIF: described two novel surface receptors, SCART1 and SCART2
COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
            NCBI review. The reference sequence was derived from EF624462.1.
            
            ##Evidence-Data-START##
            Transcript exon combination :: EF624462.1 [ECO:0000332]
            RNAseq introns              :: partial sample support SAMN00849375,
                                           SAMN00849383 [ECO:0000350]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, longest protein
            ##RefSeq-Attributes-END##
FEATURES             Location/Qualifiers
     source          1..3342
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6"
                     /db_xref="taxon:10090"
                     /chromosome="7"
                     /map="7 85.29 cM"
     gene            1..3342
                     /gene="Scart2"
                     /gene_synonym="5830411N06Rik"
                     /note="scavenger receptor family member expressed on T
                     cells 2"
                     /db_xref="GeneID:244234"
                     /db_xref="MGI:MGI:2443685"
     exon            1..67
                     /gene="Scart2"
                     /gene_synonym="5830411N06Rik"
                     /inference="alignment:Splign:2.1.0"
     CDS             4..3342
                     /gene="Scart2"
                     /gene_synonym="5830411N06Rik"
                     /note="isoform 2 precursor is encoded by transcript
                     variant 2; scavenger receptor protein family member;
                     mFLJ00268 protein"
                     /codon_start=1
                     /product="scavenger receptor family member expressed on T
                     cells 2 isoform 2 precursor"
                     /protein_id="NP_001121618.1"
                     /db_xref="CCDS:CCDS52433.1"
                     /db_xref="GeneID:244234"
                     /db_xref="MGI:MGI:2443685"
                     /translation="MAFSFLRLWPLLLLTCWTLVPDLALENFVSFLGGDNKCEGQVRL
                     RNGGQWGLMCADGLGMQEASVICRELGCGSVKFMPRYVLTPEEMRQPWLYDAQCHGNE
                     STFLECRLGSWGTISGCKCQCVAVITCSGGTTLQMGLVDGGSPCAGTAQATGASNFAL
                     RCDLHEKEAGVVCRQLECGTALQWSRAHDGTNGNQEQKYLTCQGTETNILQCLINVNV
                     LEQCDLLTYTQVVCTESTRSLETETGTCSDRVSLGNCTPKEIWHGTVLSWAVAFDATL
                     LEPSSWEQQRVVSAPGVLCMLLQDEEWSKTHQGSQEQKFVSCQGTEADIFYCKINVNF
                     AEQCDLQSYTQVVCTGHVEARLLGGVHPCEGRLEVLRGLTWGTVCHDDLDLPMAHVVC
                     RELGCGTAVSILGSSHFGYGSGPLWTEAFRCMGNESLLFHCLREPGHQCGHDQDAALI
                     CSGEKFRLVNGSSRCEGRVELLVQDAWQPLCAANWDLADATVLCHQLNCGYAVATPQG
                     GHFGNVEGPIRTDVFHCVGTEPHLLSCPTSTLGAQACALGNSASALCSGLQDALRLRE
                     GQSHCDGRVEVFLDGTWGRVLDSAWDLRDAAVVCRQLGCGEAQLAYDAPAPGHKTIPV
                     GLSLVHCLGSETHLTQCNVSASLLVHAGTLRDAGVVCSGSLHIRLAAGKNRCAGRVEV
                     FYQGTWGTVCDDAWDLQDAHVVCRQLGCGHALSAPRAAHFGAGTGRIWMDELGCMGEE
                     AALWECQSGGWGQQDCGHKEDAGVICSEFIDVRLQEHSQPCTGRLEVFYNGTWGGVCQ
                     SLNAASLRVLCEHLGCGSQGQLLARPRGSSTIETVWLKSIQCRDKHDMSLWQCPSEPW
                     NRHSCLRGEEAWLACAEKTEVSQDMEQIANCSSTLSCPEEGALRVLGGENGCSGRVEL
                     WHGGSWGTVCDDSWDLADAEVVCRQLGCGPAIAALQNAAFGPGSGPVWLDEVGCRGSE
                     LSLGACQAEPWGYGDCSHKEDAGVRCLGIPGTMASGNSSAPPPVPEFWTMPEIACLVL
                     GCLLGIVFLVLAVQWCHSRAIGLGSGAVAELPSEVVYECIETVPMDEKEEPAASQSPV
                     QDEDYDDAEEPKDSPGEDMEAGHH"
     exon            68..394
                     /gene="Scart2"
                     /gene_synonym="5830411N06Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            395..703
                     /gene="Scart2"
                     /gene_synonym="5830411N06Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            704..848
                     /gene="Scart2"
                     /gene_synonym="5830411N06Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            849..909
                     /gene="Scart2"
                     /gene_synonym="5830411N06Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            910..1051
                     /gene="Scart2"
                     /gene_synonym="5830411N06Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            1052..1366
                     /gene="Scart2"
                     /gene_synonym="5830411N06Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            1367..1672
                     /gene="Scart2"
                     /gene_synonym="5830411N06Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            1673..1990
                     /gene="Scart2"
                     /gene_synonym="5830411N06Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            1991..2305
                     /gene="Scart2"
                     /gene_synonym="5830411N06Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            2306..2620
                     /gene="Scart2"
                     /gene_synonym="5830411N06Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            2621..2686
                     /gene="Scart2"
                     /gene_synonym="5830411N06Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            2687..3001
                     /gene="Scart2"
                     /gene_synonym="5830411N06Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            3002..3025
                     /gene="Scart2"
                     /gene_synonym="5830411N06Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            3026..3163
                     /gene="Scart2"
                     /gene_synonym="5830411N06Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            3164..3342
                     /gene="Scart2"
                     /gene_synonym="5830411N06Rik"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 gttatggcat tctcttttct cagactttgg cctctactgc tgctgacctg ctggactctc
       61 gttcctgatc tggctcttga gaacttcgtg agtttcctgg gcggtgataa taaatgtgaa
      121 ggccaagtac gcttgcggaa tggtgggcag tggggcctta tgtgtgcaga cggcctgggc
      181 atgcaggagg cctcagtgat ctgcagagag ctcggctgtg gctctgtgaa gtttatgccc
      241 cggtatgttt tgacacctga agagatgagg caaccttggc tatatgatgc ccagtgccat
      301 ggcaatgaat ccaccttctt ggagtgccgt ctggggtcct gggggaccat cagtggctgc
      361 aaatgccagt gtgtggctgt gattacctgc tctggtggta ccacactaca aatggggcta
      421 gttgatggtg gcagtccttg tgctgggact gcacaggcca ctggggcttc caattttgcc
      481 ctgagatgtg acttgcatga gaaggaggct ggcgttgtct gcagacagtt ggaatgtggc
      541 actgctctgc aatggtccag agcccacgat ggaactaacg ggaaccagga gcagaagtac
      601 cttacatgcc agggaacaga gaccaacatt ttacaatgcc tgatcaatgt gaacgtcctg
      661 gagcaatgtg accttctgac ctacacccag gttgtatgca cagaatccac aagaagcctg
      721 gagacagaga caggtacctg ctctgatcgt gtcagcctgg ggaactgcac ccccaaggag
      781 atctggcatg ggactgttct ctcttgggct gtggcctttg atgctaccct gttggagcct
      841 tcttcctggg aacagcaaag ggtggtgtca gcaccaggag tcctttgcat gctacttcaa
      901 gatgaggaat ggtccaaaac tcaccaggga agtcaagaac agaaattcgt gtcttgccaa
      961 ggaacagagg ctgacatttt ctactgcaag atcaatgtga actttgcaga gcagtgcgac
     1021 cttcaatctt acacccaggt ggtgtgcaca ggtcacgtgg aagcccggct gctaggtggt
     1081 gtacacccct gtgaaggacg cctagaggtt cttagaggac ttacctgggg cactgtctgc
     1141 catgatgacc tggacctgcc catggcccac gtggtttgta gggagctggg gtgtggcact
     1201 gctgtatcca tactcgggag ttcccacttt ggctatggat cagggccttt gtggacagag
     1261 gcctttcgct gtatgggcaa cgaatcactg ctgttccatt gtctgaggga acctggacac
     1321 cagtgtggcc atgatcagga tgctgcacta atctgctcag gggaaaagtt ccgactggtc
     1381 aatggcagca gccgctgtga gggccgcgtg gagcttttgg tacaggatgc ctggcaaccc
     1441 ctctgtgctg ccaactggga cttagcagat gccactgtgc tctgccacca gctcaactgt
     1501 ggctatgcag tggccacacc gcaaggaggc cactttggaa atgtggaagg tcccatcagg
     1561 acagatgtgt ttcactgtgt gggaacagag ccccacttac tgagctgccc aacaagcacc
     1621 ttaggggccc aggcatgcgc actggggaat tcagcctcgg ctctctgctc aggtctccag
     1681 gatgcccttc ggctgaggga gggacagagt cactgtgatg gccgagtgga ggtcttcctg
     1741 gatggcacgt ggggtcgtgt gctggacagt gcatgggacc tgcgtgatgc tgctgtggtg
     1801 tgcaggcagc ttgggtgcgg agaggcacag ctagcctatg atgcgccagc accaggccat
     1861 aagaccattc ctgtggggct gagtctggtg cactgcttgg gctctgagac ccacctgacc
     1921 cagtgcaatg tatctgcttc tctgctggtt catgcaggga ctttgcggga tgcaggagtg
     1981 gtgtgctcgg ggagcttgca catacggttg gcagcgggta agaaccgctg tgctgggcgt
     2041 gttgaagtat tctatcaggg cacatggggc accgtatgtg atgatgcctg ggacctgcag
     2101 gatgcccatg tggtctgcag gcagctgggc tgtggtcatg ccctcagtgc ccctagggct
     2161 gcccactttg gagcaggaac tgggcgcatc tggatggatg aactgggctg catgggtgag
     2221 gaggctgctc tatgggagtg ccagtcagga ggctggggcc aacaagattg tgggcacaag
     2281 gaggatgcag gcgtcatctg ttcagaattt attgatgtga ggttgcaaga acatagtcag
     2341 ccatgcacag gacgactgga agttttctac aatgggacct ggggtggtgt ctgccagtct
     2401 ctgaatgctg cctccctgag ggttctgtgt gaacacctgg gctgtgggtc ccaagggcaa
     2461 ctgctggcca ggccaagggg ctcgtctacg attgagactg tctggttgaa gtccattcag
     2521 tgcagggaca agcatgacat gtccttatgg cagtgcccct cagaaccctg gaacagacat
     2581 tcttgtctta gaggcgagga agcttggttg gcatgtgcag aaaagacaga agtttctcag
     2641 gatatggagc agattgccaa ctgctcatca actcttagct gcccagagga aggtgcactt
     2701 cgtgtacttg ggggtgagaa cggctgctct ggacgagtgg agctctggca tggaggttca
     2761 tggggcacag tgtgtgacga ttcctgggat ctggccgatg cagaagttgt ttgccggcag
     2821 ctgggctgtg gcccagccat agctgccttg cagaatgctg cctttggccc tggttcaggg
     2881 cctgtatggc tggatgaagt gggatgccga ggcagtgagc tgtctctggg agcctgccag
     2941 gcagaaccat ggggatatgg agactgctcc cacaaggagg atgctggtgt gcgctgccta
     3001 ggtatccctg gaaccatggc atccggcaat tcttcagctc ctccacctgt tcctgagttc
     3061 tggaccatgc ctgagattgc ctgtctggtc cttggctgcc tcttgggcat agtctttctg
     3121 gtcctggctg ttcagtggtg tcatagcaga gccattggcc tgggttctgg agcagtggcg
     3181 gagctgccct cagaggttgt ctatgaatgc attgaaacag tccctatgga tgagaaagag
     3241 gagccagcag catcccagag tccagtgcag gatgaggatt atgatgatgc agaagagccc
     3301 aaggacagcc cgggggaaga tatggaggct gggcaccatt ga
//
