LOCUS       NM_019575               1802 bp    mRNA    linear   ROD 30-APR-2024
DEFINITION  Mus musculus secretory carrier membrane protein 4 (Scamp4), mRNA.
ACCESSION   NM_019575
VERSION     NM_019575.4
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE   1  (bases 1 to 1802)
  AUTHORS   Adams,D.J., Barlas,B., McIntyre,R.E., Salguero,I., van der
            Weyden,L., Barros,A., Vicente,J.R., Karimpour,N., Haider,A.,
            Ranzani,M., Turner,G., Thompson,N.A., Harle,V., Olvera-Leon,R.,
            Robles-Espinoza,C.D., Speak,A.O., Geisler,N., Weninger,W.J.,
            Geyer,S.H., Hewinson,J., Karp,N.A., Fu,B., Yang,F., Kozik,Z.,
            Choudhary,J., Yu,L., van Ruiten,M.S., Rowland,B.D., Lelliott,C.J.,
            Del Castillo Velasco-Herrera,M., Verstraten,R., Bruckner,L.,
            Henssen,A.G., Rooimans,M.A., de Lange,J., Mohun,T.J., Arends,M.J.,
            Kentistou,K.A., Coelho,P.A., Zhao,Y., Zecchini,H., Perry,J.R.B.,
            Jackson,S.P. and Balmus,G.
  CONSRTM   Sanger Mouse Genetics Project
  TITLE     Genetic determinants of micronucleus formation in vivo
  JOURNAL   Nature 627 (8002), 130-136 (2024)
   PUBMED   38355793
REFERENCE   2  (bases 1 to 1802)
  AUTHORS   Sampath Kumar,A., Seah,M.K., Ling,K.Y., Wang,Y., Tan,J.H.,
            Nitsch,S., Lim,S.L., Lorthongpanich,C., Wollmann,H., Low,D.H.,
            Guccione,E. and Messerschmidt,D.M.
  TITLE     Loss of maternal Trim28 causes male-predominant early embryonic
            lethality
  JOURNAL   Genes Dev 31 (1), 12-17 (2017)
   PUBMED   28115466
REFERENCE   3  (bases 1 to 1802)
  AUTHORS   Toonen,R.F., de Vries,K.J., Zalm,R., Sudhof,T.C. and Verhage,M.
  TITLE     Munc18-1 stabilizes syntaxin 1, but is not essential for syntaxin 1
            targeting and SNARE complex formation
  JOURNAL   J Neurochem 93 (6), 1393-1400 (2005)
   PUBMED   15935055
REFERENCE   4  (bases 1 to 1802)
  AUTHORS   Fernandez-Chacon,R. and Sudhof,T.C.
  TITLE     Novel SCAMPs lacking NPF repeats: ubiquitous and synaptic
            vesicle-specific forms implicate SCAMPs in multiple
            membrane-trafficking functions
  JOURNAL   J Neurosci 20 (21), 7941-7950 (2000)
   PUBMED   11050114
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            AK019112.1 and AF224721.1.
            
            On Apr 27, 2004 this sequence version replaced NM_019575.3.
            
            ##Evidence-Data-START##
            Transcript exon combination :: AK154094.1, AK019112.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMN00849374, SAMN00849375
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on single protein-coding transcript
            ##RefSeq-Attributes-END##
            COMPLETENESS: complete on the 3' end.
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-363               AK019112.1         4-366
            364-1802            AF224721.1         339-1777
FEATURES             Location/Qualifiers
     source          1..1802
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /db_xref="taxon:10090"
                     /chromosome="10"
                     /map="10 39.72 cM"
     gene            1..1802
                     /gene="Scamp4"
                     /gene_synonym="2410022D05Rik; Sc4"
                     /note="secretory carrier membrane protein 4"
                     /db_xref="GeneID:56214"
                     /db_xref="MGI:MGI:1928947"
     exon            1..68
                     /gene="Scamp4"
                     /gene_synonym="2410022D05Rik; Sc4"
                     /inference="alignment:Splign:2.1.0"
     exon            69..116
                     /gene="Scamp4"
                     /gene_synonym="2410022D05Rik; Sc4"
                     /inference="alignment:Splign:2.1.0"
     CDS             110..802
                     /gene="Scamp4"
                     /gene_synonym="2410022D05Rik; Sc4"
                     /codon_start=1
                     /product="secretory carrier-associated membrane protein 4"
                     /protein_id="NP_062521.1"
                     /db_xref="CCDS:CCDS24028.1"
                     /db_xref="GeneID:56214"
                     /db_xref="MGI:MGI:1928947"
                     /translation="MAGKENNFPPLPPFLPLKPCFYQDFSDEIPVEHQVLVKRIYRLW
                     MFYCATLGVNLVACLAWWIAGGAGANFGLALLWLVLFTPCSYVCWFRPAYKAFRADSS
                     FNFMTFFFIFGAQFVLTVIQAIGFSGWGACGWLAAVGFFGTSVGAAVVMLVPAILFSL
                     SALVMAVTIVKVHRIYRGAGGSLQKAQTEWSAGTWRNPPSREAQFNSFSGNSLPEYPT
                     VPSYSSSGGHWP"
     exon            117..245
                     /gene="Scamp4"
                     /gene_synonym="2410022D05Rik; Sc4"
                     /inference="alignment:Splign:2.1.0"
     exon            246..402
                     /gene="Scamp4"
                     /gene_synonym="2410022D05Rik; Sc4"
                     /inference="alignment:Splign:2.1.0"
     exon            403..504
                     /gene="Scamp4"
                     /gene_synonym="2410022D05Rik; Sc4"
                     /inference="alignment:Splign:2.1.0"
     exon            505..622
                     /gene="Scamp4"
                     /gene_synonym="2410022D05Rik; Sc4"
                     /inference="alignment:Splign:2.1.0"
     exon            623..1802
                     /gene="Scamp4"
                     /gene_synonym="2410022D05Rik; Sc4"
                     /inference="alignment:Splign:2.1.0"
     regulatory      1785..1790
                     /regulatory_class="polyA_signal_sequence"
                     /gene="Scamp4"
                     /gene_synonym="2410022D05Rik; Sc4"
     polyA_site      1802
                     /gene="Scamp4"
                     /gene_synonym="2410022D05Rik; Sc4"
                     /experiment="experimental evidence, no additional details
                     recorded"
ORIGIN      
        1 ggtggcaggc gtggcggccc ggttgctagg acttggataa gcgtggcgtt cgctcgggtg
       61 tccctcaggt ggccccttct gcctgggtgc caggtcagct gatacagaaa tggcaggaaa
      121 ggagaacaac ttccccccac tgcctccctt cctgccactg aagccctgct tctaccagga
      181 cttctctgat gagatccccg tggagcacca ggtgctggtg aagaggatct accggctgtg
      241 gatgttttac tgtgccactc tgggtgtgaa cctggtggcc tgcctggcct ggtggattgc
      301 gggcggagct ggtgccaatt ttggcctggc cttgctctgg ctggttctct tcactccctg
      361 cagttatgtg tgctggttcc ggcctgcata caaggccttc cgagccgaca gctcctttaa
      421 cttcatgaca ttcttcttca tctttggagc ccagtttgtg ctgactgtca ttcaggccat
      481 tggcttctcg ggctggggcg catgtggttg gctggcagct gttggcttct ttgggaccag
      541 tgttggggct gctgtggtta tgctggtccc ggccatcctg ttttccttgt ccgcccttgt
      601 gatggccgtc actatcgtga aggtgcacag gatctaccgt ggggctggtg gaagcctcca
      661 gaaggcacag acagagtgga gcgctggtac ctggaggaac ccaccatcga gggaggccca
      721 gtttaacagt ttctctggga acagcctgcc tgagtacccc actgtcccca gctactcgtc
      781 cagcggaggc cactggcctt aggcggctgc ctggccccag caccatggct ctgtctcctg
      841 ttaccaccct cggtcctgag gtctgagcat ctctcaaggg tcccaggagg tccttggccc
      901 atgttcatct cttgcccaag ccctcagcaa gcactgccca acaaccattg tccactgcca
      961 tcctaccaga gcctggctgg atttgccctg ctcccacctg ttaagagggt agaaaccctc
     1021 agcctgtgca aggagaggcc tcaacctcca agcgcctgtc ctttgtgttg ctgagatgta
     1081 taaagccaaa ctctgagcgc ttgtgtagat gggtgtgagt ggacagtcag gagcatggtg
     1141 gctgtgcctg aatcctctgt tctgccatcc actatacctg tgctcctctg gaccctgcta
     1201 cttccttgtc ccatcccttg tgacagtgac aacctgctgt cccctccacc acccaggatc
     1261 ctgaataggc ctttgcccac ttgcagaccc tgatccactt ggttgagggt gctctggctg
     1321 ccgggagacc ccctccctct ctgtgggcaa ctggtgggag aggaacaggc tctgctacct
     1381 ggcaggccat acccccagcc acaggactgc tgggacagat ctgtgcctta gagagacctg
     1441 tacttctccc cacaccctct gccttcccgg ggtagctgtg gccttgccag aagagccaat
     1501 ctgagttttg gagtgtccac agcacctctg atgacattgg actcaatatt cttccttgtg
     1561 acccgatgtt accagccaag tcaccaggcc tccccacagg cctgtgtgcc agtatcatgc
     1621 caaactgttg gggcacctgc cctctacccc atcgtgtcat ggagatggag tcaagtgccc
     1681 gccatgggta acaccctaca gccacctgcg gctcttccct gttcacccct gggtatgtgc
     1741 acccacacgc catagttggt tttgttatgt gagaatattc tggaaataaa ttctctttct
     1801 gc
//
