LOCUS       NM_029153               3605 bp    mRNA    linear   ROD 31-MAY-2024
DEFINITION  Mus musculus secretory carrier membrane protein 1 (Scamp1),
            transcript variant 1, mRNA.
ACCESSION   NM_029153 XM_484305
VERSION     NM_029153.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE   1  (bases 1 to 3605)
  AUTHORS   Kasowitz,S.D., Ma,J., Anderson,S.J., Leu,N.A., Xu,Y., Gregory,B.D.,
            Schultz,R.M. and Wang,P.J.
  TITLE     Nuclear m6A reader YTHDC1 regulates alternative polyadenylation and
            splicing during mouse oocyte development
  JOURNAL   PLoS Genet 14 (5), e1007412 (2018)
   PUBMED   29799838
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3605)
  AUTHORS   Felkl,M. and Leube,R.E.
  TITLE     Interaction assays in yeast and cultured cells confirm known and
            identify novel partners of the synaptic vesicle protein
            synaptophysin
  JOURNAL   Neuroscience 156 (2), 344-352 (2008)
   PUBMED   18706977
REFERENCE   3  (bases 1 to 3605)
  AUTHORS   Kenney-Hunt,J.P., Vaughn,T.T., Pletscher,L.S., Peripato,A.,
            Routman,E., Cothran,K., Durand,D., Norgard,E., Perel,C. and
            Cheverud,J.M.
  TITLE     Quantitative trait loci for body size components in mice
  JOURNAL   Mamm Genome 17 (6), 526-537 (2006)
   PUBMED   16783635
REFERENCE   4  (bases 1 to 3605)
  AUTHORS   Toonen,R.F., de Vries,K.J., Zalm,R., Sudhof,T.C. and Verhage,M.
  TITLE     Munc18-1 stabilizes syntaxin 1, but is not essential for syntaxin 1
            targeting and SNARE complex formation
  JOURNAL   J Neurochem 93 (6), 1393-1400 (2005)
   PUBMED   15935055
REFERENCE   5  (bases 1 to 3605)
  AUTHORS   Blackshaw,S., Harpavat,S., Trimarchi,J., Cai,L., Huang,H.,
            Kuo,W.P., Weber,G., Lee,K., Fraioli,R.E., Cho,S.H., Yung,R.,
            Asch,E., Ohno-Machado,L., Wong,W.H. and Cepko,C.L.
  TITLE     Genomic analysis of mouse retinal development
  JOURNAL   PLoS Biol 2 (9), E247 (2004)
   PUBMED   15226823
REFERENCE   6  (bases 1 to 3605)
  AUTHORS   Bose,A., Guilherme,A., Robida,S.I., Nicoloro,S.M., Zhou,Q.L.,
            Jiang,Z.Y., Pomerleau,D.P. and Czech,M.P.
  TITLE     Glucose transporter recycling in response to insulin is facilitated
            by myosin Myo1c
  JOURNAL   Nature 420 (6917), 821-824 (2002)
   PUBMED   12490950
REFERENCE   7  (bases 1 to 3605)
  AUTHORS   Riedel,D., Antonin,W., Fernandez-Chacon,R., Alvarez de Toledo,G.,
            Jo,T., Geppert,M., Valentijn,J.A., Valentijn,K., Jamieson,J.D.,
            Sudhof,T.C. and Jahn,R.
  TITLE     Rab3D is not required for exocrine exocytosis but for maintenance
            of normally sized secretory granules
  JOURNAL   Mol Cell Biol 22 (18), 6487-6497 (2002)
   PUBMED   12192047
REFERENCE   8  (bases 1 to 3605)
  AUTHORS   Piao,Y., Ko,N.T., Lim,M.K. and Ko,M.S.
  TITLE     Construction of long-transcript enriched cDNA libraries from
            submicrogram amounts of total RNAs by a universal PCR amplification
            method
  JOURNAL   Genome Res 11 (9), 1553-1558 (2001)
   PUBMED   11544199
REFERENCE   9  (bases 1 to 3605)
  AUTHORS   Fernandez-Chacon,R., Alvarez de Toledo,G., Hammer,R.E. and
            Sudhof,T.C.
  TITLE     Analysis of SCAMP1 function in secretory vesicle exocytosis by
            means of gene targeting in mice
  JOURNAL   J Biol Chem 274 (46), 32551-32554 (1999)
   PUBMED   10551807
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            BC034283.1.
            
            On Jan 24, 2005 this sequence version replaced XM_484305.1.
            
            ##Evidence-Data-START##
            Transcript exon combination :: BC034283.1, AK135058.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMN01164131, SAMN01164138
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression,
                                      longest protein
            ##RefSeq-Attributes-END##
FEATURES             Location/Qualifiers
     source          1..3605
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="FVB/N"
                     /db_xref="taxon:10090"
                     /chromosome="13"
                     /map="13 49.22 cM"
     gene            1..3605
                     /gene="Scamp1"
                     /gene_synonym="4930505M11Rik"
                     /note="secretory carrier membrane protein 1"
                     /db_xref="GeneID:107767"
                     /db_xref="MGI:MGI:1349480"
     exon            1..62
                     /gene="Scamp1"
                     /gene_synonym="4930505M11Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            63..140
                     /gene="Scamp1"
                     /gene_synonym="4930505M11Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            141..239
                     /gene="Scamp1"
                     /gene_synonym="4930505M11Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            240..348
                     /gene="Scamp1"
                     /gene_synonym="4930505M11Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            349..477
                     /gene="Scamp1"
                     /gene_synonym="4930505M11Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            478..637
                     /gene="Scamp1"
                     /gene_synonym="4930505M11Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            638..739
                     /gene="Scamp1"
                     /gene_synonym="4930505M11Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            740..857
                     /gene="Scamp1"
                     /gene_synonym="4930505M11Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            858..3588
                     /gene="Scamp1"
                     /gene_synonym="4930505M11Rik"
                     /inference="alignment:Splign:2.1.0"
     regulatory      3568..3573
                     /regulatory_class="polyA_signal_sequence"
                     /gene="Scamp1"
                     /gene_synonym="4930505M11Rik"
                     /note="hexamer: AATAAA"
     polyA_site      3588
                     /gene="Scamp1"
                     /gene_synonym="4930505M11Rik"
                     /note="major polyA site"
ORIGIN      
        1 gggcaatgtc ggattttgac agcaacccgt ttgcggatcc ggatctcaac aacccgttca
       61 aggacccatc tgtcacacag gtgacaagaa atgtgccacc gggacttgat gaatacaacc
      121 ctttctccga ctctcgcacg cctccaccag gcagtgtgaa aatgcctaat gtacccaaca
      181 cccagccagc aataatgaag ccaacagagg aacatccagc ttacacacag atcacaaagg
      241 aacatgcctt ggctcaagct gaactgctca agcgccaaga agagctggag agaaaagctg
      301 cagagttgga tcgtcgtgag cgcgagatgc agaacctgag ccagcatggg agaaaaaata
      361 attggcctcc tcttcctagc aattttcccg tgggaccttg tttctatcaa gacttttctg
      421 ttgacattcc tgtagaattc cagaagacgg tgaagcttat gtactaccta tggatgttcc
      481 atgcagtgac cctgtttctg aacatcttcg gatgcttggc ctggttttgt gttgattcct
      541 cgagagcagt cgactttggg ctgagcatcc tgtggttcct gctcttcact ccctgctcct
      601 ttgtctgttg gtacagaccg ctgtacgggg ccttcaggag cgacagttcc ttcaggttct
      661 ttgtgttctt cttcgtctat atttgtcagt ttgctgtcca tgtgctccag gctgcaggat
      721 ttcataactg gggaaactgt ggttggatct cgtccctcac tggtctcaac aagaacattc
      781 cagtcgggat catgatgata atcatcgcag cgctcttcac agcgtccgcg gtcatctcgc
      841 tcgtcatgtt taaaaaagtg catggactgt accgcacaac aggtgctagt tttgagaagg
      901 cccagcaaga gtttgcaacg ggagtgatgt ccaataaaac tgttcagaca gcggctgcaa
      961 acgccgcctc aaccgcagca accagcgcgg cgcagaacgc cttcaagggt aaccagatgt
     1021 agcgagcctg gaagcagttc tctgtttcct taggactgta tctttttctc cagttactgt
     1081 attctacaga tattttttgt tggaaacaca caatacacaa aagcatgggt atttccaatc
     1141 cacatgtgca tggtctaaaa accagagaaa cttccttgtc ttattacttt gcctaatagt
     1201 ttcttaatat ttccatgctc tgcacagaag aaaactatca cctgctaaat aaatattctc
     1261 catatttttg ggggatggtg ttcctcagat tatttcagtg gtgacacact gaaatgagta
     1321 tgtgacttaa gatttaaaaa gcgctcgata gtaaccacag aagttcttcc aggagtcagt
     1381 agagattcag actatacatt ggacatgaca ccatgtttct ttcttttccc ccctctatta
     1441 ataacgaagg aacaaggtca gcaaaagttt gggtgttttt aaattggctt gctttatatg
     1501 aggttcagtc accagagaag agcctgtgtg ctctgtagta gataatgtat attttacctt
     1561 cctttatttt atttttagac tagttgatta ttttgataac aatctctgat cttgcatggg
     1621 caccacgtct cttaagtgaa atgaattagt attttgggtt ctgtactgct tatagttgta
     1681 ggatctgggg ctctttatag aatcagaaat gattttctgt aatagtttct tttaagtaaa
     1741 aatttactgg agtataaaga ctttaatata atgtgcagtg cattatccaa agagagggta
     1801 gtgaattgat gcaatagaat atagtgataa tttcttttcc ctcttaattt ttagtattca
     1861 tatagtaaag ttttactgta tgaaaacttt gatatattct tctgtcttat ctttttaatt
     1921 gaactaggat ttgtgtttgg cagctgtgtg tgtgtgtgtg tgtgtgtgtg tttgtttttg
     1981 tgtgtgtgtg tgagagagag agagagagag agattgattt tgacacaggt attaaggcta
     2041 gcctaaccct tgaataaaaa gaacacacag tatttaaggg atttttcttt tagcctctca
     2101 cttttagtta cattaaaaat aaaagaccct tgtgattcta atatgcttga tttcttaatg
     2161 tacctgtctt ttacttttaa gacagactaa atccatgtga aacattgcac caagcaatgg
     2221 agagaaagct caagtaatat attcattatt ggtaacatcc aatttacatt gttatggtgc
     2281 agcacaaact gatgtgggtt gagactttta atcattttta atgctgatta gctgtctcaa
     2341 gaacatttgt aaggcagact gttgtagttt ggaagtctca ctagtttaga ttgcaaaatg
     2401 atagataggc tgcaacttac ccaagttgac tttaaacaaa gatgggctgt caaagacagg
     2461 atatccttta aaaatgagct gaagtgagtg gctgagccac tgtaccctgt ccccaaggct
     2521 gcagtcgggg actctgtgca gagctggggt gcagttcctt gaggtctgtg gtattggatt
     2581 atacatctgc ccatgcaggg ccatgctaga tttgcttggg aatttactaa gtacaatagt
     2641 ccaaaaatgt ttctttgatt gaggaaaagg tagaattcag agtatgactt tggagttgtg
     2701 ttttgagtcc ccatgagtag gattcccctt cgttctcacc tgctcatgtg tggctgctga
     2761 gcgactgtgc ttcatccagt gtggtttgat ggacactgag gtcactaagg gtgtaagagt
     2821 tcacagaaac accagtactt atattctaaa tccaggctta ttcttctctg atgtacaaat
     2881 aagagacaca tcagagattc acaaaatgct aatagttttt tattttcaaa attgggaatg
     2941 ttccctgtcc attatgtgga ggtccccaga ggtggtatta ttaaatggaa aagaatagtt
     3001 ataactcaca ttatgttttt gcgtatgaac aaggaaaatg ctgttttcaa tccaattgtt
     3061 tggattcata cacgtttgaa agagattatg ttgtttgaaa acacaaagga gctttacagc
     3121 catggtggtg tctgtggctg ggtcaggtgg gagcggctcg aagcccttac ctgctgtcct
     3181 ctcagcagca gtctgtcagc agtgcactgt gatttggtga aagcctgttg acgtcttcta
     3241 ttcaatccca atgttactgc agccatgaga cgagctgcac gaggacaggc atccatgtca
     3301 cgtcttagtt ggcgatgtta aatggtgact gttttattta aaactcgggt ctgatcactg
     3361 gaaacgattg cttggtgatt tgtgatttgg ggctcggttc attgctctag ggatgtttgt
     3421 gtattgtgta ggtgcgtgta ctactgcgct gcccctgtgg tatgtcacgg ttctgtgtaa
     3481 acgccctcca tgtggccctc tcatgttgca tgttttcagt ggtttggaag ttttgtatat
     3541 ttattgtatt aatgcagagt gtcataaaat aaaataatgt ttactggaaa aaaaaaaaaa
     3601 aaaaa
//
