LOCUS       NM_134123               4892 bp    mRNA    linear   ROD 01-JUN-2024
DEFINITION  Mus musculus SR-related CTD-associated factor 8 (Scaf8), mRNA.
ACCESSION   NM_134123 XM_619423 XM_918778
VERSION     NM_134123.3
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE   1  (bases 1 to 4892)
  AUTHORS   McKee,A.E., Minet,E., Stern,C., Riahi,S., Stiles,C.D. and
            Silver,P.A.
  TITLE     A genome-wide in situ hybridization map of RNA-binding proteins
            reveals anatomically restricted expression in the developing mouse
            brain
  JOURNAL   BMC Dev Biol 5, 14 (2005)
   PUBMED   16033648
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4892)
  AUTHORS   Cobellis,G., Nicolaus,G., Iovino,M., Romito,A., Marra,E.,
            Barbarisi,M., Sardiello,M., Di Giorgio,F.P., Iovino,N., Zollo,M.,
            Ballabio,A. and Cortese,R.
  TITLE     Tagging genes with cassette-exchange sites
  JOURNAL   Nucleic Acids Res 33 (4), e44 (2005)
   PUBMED   15741177
  REMARK    Publication Status: Online-Only
REFERENCE   3  (bases 1 to 4892)
  AUTHORS   Okazaki,N., Kikuno,R., Ohara,R., Inamoto,S., Aizawa,H., Yuasa,S.,
            Nakajima,D., Nagase,T., Ohara,O. and Koga,H.
  TITLE     Prediction of the coding sequences of mouse homologues of KIAA
            gene: II. The complete nucleotide sequences of 400 mouse
            KIAA-homologous cDNAs identified by screening of terminal sequences
            of cDNA clones randomly sampled from size-fractionated libraries
  JOURNAL   DNA Res 10 (1), 35-48 (2003)
   PUBMED   12693553
REFERENCE   4  (bases 1 to 4892)
  AUTHORS   Stryke,D., Kawamoto,M., Huang,C.C., Johns,S.J., King,L.A.,
            Harper,C.A., Meng,E.C., Lee,R.E., Yee,A., L'Italien,L.,
            Chuang,P.T., Young,S.G., Skarnes,W.C., Babbitt,P.C. and Ferrin,T.E.
  TITLE     BayGenomics: a resource of insertional mutations in mouse embryonic
            stem cells
  JOURNAL   Nucleic Acids Res 31 (1), 278-281 (2003)
   PUBMED   12520002
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            AK042381.1, BC075621.1 and CA560428.1.
            
            On or before Jun 27, 2009 this sequence version replaced
            XM_918778.3, XM_619423.4, NM_134123.2.
            
            ##Evidence-Data-START##
            Transcript exon combination :: BC075621.1, AK122451.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMN00849374, SAMN00849375
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on single protein-coding transcript
            ##RefSeq-Attributes-END##
            COMPLETENESS: complete on the 3' end.
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-575               AK042381.1         2-576
            576-1556            BC075621.1         569-1549
            1557-1957           CA560428.1         196-596
            1958-4892           BC075621.1         1951-4885
FEATURES             Location/Qualifiers
     source          1..4892
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6"
                     /db_xref="taxon:10090"
                     /chromosome="17"
                     /map="17 1.96 cM"
     gene            1..4892
                     /gene="Scaf8"
                     /gene_synonym="A630086M08Rik; A930036P18Rik; mKIAA1116;
                     Rbm16"
                     /note="SR-related CTD-associated factor 8"
                     /db_xref="GeneID:106583"
                     /db_xref="MGI:MGI:1925212"
     exon            1..447
                     /gene="Scaf8"
                     /gene_synonym="A630086M08Rik; A930036P18Rik; mKIAA1116;
                     Rbm16"
                     /inference="alignment:Splign:2.1.0"
     CDS             418..4224
                     /gene="Scaf8"
                     /gene_synonym="A630086M08Rik; A930036P18Rik; mKIAA1116;
                     Rbm16"
                     /note="RNA binding motif protein 16; CTD-binding SR-like
                     protein rA8; putative RNA-binding protein 16; protein
                     SCAF8; SR-like CTD-associated factor 8"
                     /codon_start=1
                     /product="SR-related and CTD-associated factor 8"
                     /protein_id="NP_598884.2"
                     /db_xref="CCDS:CCDS49927.1"
                     /db_xref="GeneID:106583"
                     /db_xref="MGI:MGI:1925212"
                     /translation="MEAVKTFNSELYSLNDYKPPISKAKMTQITKAAIKAIKFYKHVV
                     QSVEKFIQKCKPEYKVPGLYVIDSIVRQSRHQFGQEKDVFAPRFSNNIISTFQNLYRC
                     PGDDKSKIVRVLNLWQKNNVFKSEIIQPLLDMAAGIPPPVVTPVLASTTAAMSNTPGT
                     PVTPVTPANVVQGLPDPWVSQIANTDTLAAVAQILQSPQGQQLQQLIQTLQIQQQKPQ
                     PSILQALDAGLVVQLQALTAQLTAAAAAANTLTPLDQGVSFNKKLMDRFDFGEDSEHS
                     EESKKEMPTPQLSHVSESVNNSIFHQIAEQLQQQNLEQLRQQLLEQQQPQKVTPQDSQ
                     EGTFGSEHSASPSQGSSQQHFLEPEANLDDSIDIQQQDMDIDEGQDVVEEEIFEPEAK
                     KVAVRSRSRTHSRSRSRSPRKRRSRSRSGSRKRKHRKRSRSHSREKKRKASRSYSSER
                     RAREREKERQKKGLPPVRSKTLSVCSTTLWVGQVDKKATQQDLTNLFEEFGQIESINM
                     IPPRGCAYVCMVHRQDSFRALQKLSSGSYKIGSKVIKIAWALNKGVKTEYKQFWDVDL
                     GVTYIPWEKVKVDDLDGFAEGGMIDQETVNAEWETVKASEPVKEPVQTAQSPAPVEKE
                     SVVTTQAEVFPPPVAMLQIPVAPAVPAVSLVPPAFPVSMPVPPPGFNPIPPPPFLRAS
                     FNPSQPPPGFMPPPVPPPVVPPPAIPPVVPTSLVQPPLSMTPEAVKDVGFGSLVLPSG
                     SVAGSLAPSTLPAGNVFNPPSKAEPEEKVPHLIEHQIPSGENTRPVIPSDIPSSAAML
                     AQPPGASSTSGILCVQRPNVSSNSEILGVRPANVSNSAAIMGAQPPNILNNSGILAIQ
                     PPNVSSGSGLLGVLPPNLPNNSGLVGLQPPNVTSPAGLLGTQPPIGPQNLPPLAIPAQ
                     RMPALPMLDIRPGLIAQAPGPRFPLLQPGIPPQRGIPPPSVLDAALHPPPRGPFPPGD
                     LFSQPERPFLAPGRPSIDNVPNPDKRIPLGNDNIQQEGDRDYRFPPIETREGITRPPQ
                     VDVRDVVGRRLDPREGPGRPPLDARDHFGRPPVDMRENLVRPSLDHLGRRDHFGFPPE
                     KPWGPRDFDEREHRVLPVFGGPKGLHEERGRFRAGNYRFDPRSGPWNRGFGQEVHRDF
                     DDRRRPWERQRDRDDRDFDFCREINGNRLGRDRIQNTWVPPPHARVFDYFEGATSQRK
                     GDNVPQVNGENTERHAQPPPLPVQKDPELYEKLASSGDVDKEESGTVAGVESEAVVES
                     TETEGT"
     exon            448..531
                     /gene="Scaf8"
                     /gene_synonym="A630086M08Rik; A930036P18Rik; mKIAA1116;
                     Rbm16"
                     /inference="alignment:Splign:2.1.0"
     exon            532..576
                     /gene="Scaf8"
                     /gene_synonym="A630086M08Rik; A930036P18Rik; mKIAA1116;
                     Rbm16"
                     /inference="alignment:Splign:2.1.0"
     exon            577..738
                     /gene="Scaf8"
                     /gene_synonym="A630086M08Rik; A930036P18Rik; mKIAA1116;
                     Rbm16"
                     /inference="alignment:Splign:2.1.0"
     exon            739..892
                     /gene="Scaf8"
                     /gene_synonym="A630086M08Rik; A930036P18Rik; mKIAA1116;
                     Rbm16"
                     /inference="alignment:Splign:2.1.0"
     exon            893..1023
                     /gene="Scaf8"
                     /gene_synonym="A630086M08Rik; A930036P18Rik; mKIAA1116;
                     Rbm16"
                     /inference="alignment:Splign:2.1.0"
     exon            1024..1200
                     /gene="Scaf8"
                     /gene_synonym="A630086M08Rik; A930036P18Rik; mKIAA1116;
                     Rbm16"
                     /inference="alignment:Splign:2.1.0"
     exon            1201..1280
                     /gene="Scaf8"
                     /gene_synonym="A630086M08Rik; A930036P18Rik; mKIAA1116;
                     Rbm16"
                     /inference="alignment:Splign:2.1.0"
     exon            1281..1398
                     /gene="Scaf8"
                     /gene_synonym="A630086M08Rik; A930036P18Rik; mKIAA1116;
                     Rbm16"
                     /inference="alignment:Splign:2.1.0"
     exon            1399..1530
                     /gene="Scaf8"
                     /gene_synonym="A630086M08Rik; A930036P18Rik; mKIAA1116;
                     Rbm16"
                     /inference="alignment:Splign:2.1.0"
     exon            1531..1643
                     /gene="Scaf8"
                     /gene_synonym="A630086M08Rik; A930036P18Rik; mKIAA1116;
                     Rbm16"
                     /inference="alignment:Splign:2.1.0"
     exon            1644..1837
                     /gene="Scaf8"
                     /gene_synonym="A630086M08Rik; A930036P18Rik; mKIAA1116;
                     Rbm16"
                     /inference="alignment:Splign:2.1.0"
     exon            1838..1938
                     /gene="Scaf8"
                     /gene_synonym="A630086M08Rik; A930036P18Rik; mKIAA1116;
                     Rbm16"
                     /inference="alignment:Splign:2.1.0"
     exon            1939..2052
                     /gene="Scaf8"
                     /gene_synonym="A630086M08Rik; A930036P18Rik; mKIAA1116;
                     Rbm16"
                     /inference="alignment:Splign:2.1.0"
     exon            2053..2209
                     /gene="Scaf8"
                     /gene_synonym="A630086M08Rik; A930036P18Rik; mKIAA1116;
                     Rbm16"
                     /inference="alignment:Splign:2.1.0"
     exon            2210..2343
                     /gene="Scaf8"
                     /gene_synonym="A630086M08Rik; A930036P18Rik; mKIAA1116;
                     Rbm16"
                     /inference="alignment:Splign:2.1.0"
     exon            2344..2488
                     /gene="Scaf8"
                     /gene_synonym="A630086M08Rik; A930036P18Rik; mKIAA1116;
                     Rbm16"
                     /inference="alignment:Splign:2.1.0"
     exon            2489..2557
                     /gene="Scaf8"
                     /gene_synonym="A630086M08Rik; A930036P18Rik; mKIAA1116;
                     Rbm16"
                     /inference="alignment:Splign:2.1.0"
     exon            2558..2773
                     /gene="Scaf8"
                     /gene_synonym="A630086M08Rik; A930036P18Rik; mKIAA1116;
                     Rbm16"
                     /inference="alignment:Splign:2.1.0"
     exon            2774..4873
                     /gene="Scaf8"
                     /gene_synonym="A630086M08Rik; A930036P18Rik; mKIAA1116;
                     Rbm16"
                     /inference="alignment:Splign:2.1.0"
     regulatory      4851..4856
                     /regulatory_class="polyA_signal_sequence"
                     /gene="Scaf8"
                     /gene_synonym="A630086M08Rik; A930036P18Rik; mKIAA1116;
                     Rbm16"
                     /note="hexamer: AATAAA"
     polyA_site      4873
                     /gene="Scaf8"
                     /gene_synonym="A630086M08Rik; A930036P18Rik; mKIAA1116;
                     Rbm16"
                     /note="major polyA site"
ORIGIN      
        1 ggatgccgca gccgccgcgg tcagcgcttc ctcctgtgtc ttcgctgcgc gctgcaggtt
       61 cccgcggcct aggcggcagg gaggtgacac aggagcccgt gggaggaaga ggaaggagga
      121 gaagggggtg gagagtggag ggggccgaag cttgagtgtg gaggccgctt ccgagcgagg
      181 cggagaagca gagaaggcgc cgcgccagcc cctcccccgc cgccgacccg ccccggcggc
      241 ctccgtcctg ctcactgcgc ccgccccgcg gccatgctgg ggcctcgccg gcgctgagga
      301 gcgtcgcctg ctcgcagtgc tccgcggcct cctgggcccg tcgcccgcct ttccgcacgc
      361 atcgcacccg gccgccgcct cttcctccgt cgggccccgg gcctctgcgc agacaacatg
      421 gaggccgtga agaccttcaa cagcgagttg tattcactga atgactataa gccacccatt
      481 tctaaagcaa aaatgaccca aattacaaag gcagccatca aagctattaa gttttataaa
      541 catgtggtac aaagtgttga gaaattcatt cagaaatgta aaccagaata caaggtacct
      601 ggactatatg ttattgactc cattgtgcga caatcccggc atcagtttgg tcaagaaaag
      661 gatgtgtttg cacccagatt tagtaataac atcattagca cttttcagaa tttatatcgt
      721 tgccctgggg atgacaagag taaaatagtg agagtattaa acttatggca gaagaataat
      781 gtttttaaga gtgagattat ccagcctctt ctggatatgg cggcagggat tcctccccca
      841 gttgtcacgc ctgttttggc cagcaccact gcagctatga gcaacactcc aggaacaccc
      901 gtgacacctg ttactccagc caatgtggtc caaggcttac ctgatccatg ggtatctcag
      961 atagcaaaca cagacacact ggcagctgtt gctcagatcc tacaaagtcc tcaaggtcaa
     1021 cagcttcagc agctaataca aaccttacag atacagcagc agaagcctca gccttctatc
     1081 ctgcaggcct tggatgctgg tcttgtggtt cagttacagg cactcactgc acagctcaca
     1141 gctgcagctg ctgcagccaa cacacttacg cccttggatc agggagtctc tttcaacaag
     1201 aagttgatgg atagatttga ttttggggaa gattctgagc atagtgaaga atccaaaaag
     1261 gaaatgccta ctcctcaact ctctcacgtt tcagagtctg tgaacaactc catcttccat
     1321 cagatagcag aacagctgca gcagcagaac ttggagcagt tgcgacagca gctcctggag
     1381 cagcagcagc ctcagaaggt aactcctcaa gatagccagg aggggacatt tgggtctgag
     1441 cactcagctt ctccctcaca agggagtagc caacagcatt ttctggaacc tgaagcaaat
     1501 ttagatgatt ccatagacat tcagcaacag gatatggata ttgatgaagg gcaagatgtt
     1561 gttgaagagg agatctttga accagaagct aagaaagtag ctgttcgctc aagatcaaga
     1621 actcattcac gatctcgatc aaggtcacca agaaaacgaa ggtccaggtc acgctctggg
     1681 tcccgaaagc gaaagcacag gaagcggtct cggtcccact cgagagagaa aaagagaaaa
     1741 gcctcacgct cctactccag tgagcgcaga gccagggaaa gggagaaaga gcgccagaaa
     1801 aagggcttgc ctcctgtcag gtcaaaaaca ctaagtgtat gcagcactac tctctgggtt
     1861 ggccaagtgg acaagaaggc tacacagcaa gatttaacca acctttttga ggaatttgga
     1921 caaattgaat ccattaatat gattccaccc aggggctgtg catatgtctg catggttcat
     1981 cgacaagatt catttcgggc tcttcagaaa ctgagttcag gatcctataa aattggttcc
     2041 aaggtcatta agattgcctg ggctttgaac aaaggtgtaa agacagaata caaacagttc
     2101 tgggatgtgg atcttggcgt cacatatata ccctgggaaa aagtgaaagt agatgacttg
     2161 gatggctttg cagagggcgg catgattgat caggagactg taaatgctga atgggaaact
     2221 gtgaaagcct cagaacctgt taaagagcca gtgcagactg cacagagtcc agctccagtt
     2281 gagaaggagt cagtggtcac cacacaggca gaggttttcc ctcctcctgt cgccatgctg
     2341 cagattcctg tagcaccagc tgttcctgca gttagcttag ttcctccagc gtttcctgtg
     2401 tcgatgcctg tcccccctcc tggattcaac ccgatccctc cacctccttt tctacgagca
     2461 agttttaacc cttcacaacc acctcctggt tttatgccac ctccagttcc cccacctgtg
     2521 gtacctcccc ctgcaatccc accggtagta ccaacatctt tagtgcaacc accattgtcc
     2581 atgacccctg aagctgtgaa agatgttgga tttggcagcc tggttttacc aagtggttct
     2641 gttgctggca gtcttgctcc ttcaactcta ccagctggaa atgtttttaa tcctcccagt
     2701 aaagcagagc ctgaagaaaa agtacctcac cttatagagc accagattcc ttctggtgag
     2761 aacacaagac cagtgattcc aagtgatatt ccaagtagtg ctgcaatgtt agcacagccg
     2821 cctggggcct caagcacctc tgggatcctg tgcgtgcaga gaccaaatgt atcaagtaat
     2881 tctgaaattc tgggggttcg tccagctaat gtttccaaca gtgctgcaat tatgggagcc
     2941 cagccaccaa atattctaaa taactctgga attttggcca tacagccacc aaatgtgtcc
     3001 agtggctctg gacttcttgg ggtactgcct ccaaacttgc ctaacaactc tggacttgta
     3061 ggactacagc caccaaatgt tacaagtcct gctggacttt tgggaacaca gccaccaatt
     3121 ggacctcaaa acttaccacc tttagccatc cctgctcaaa ggatgcccgc gttgccaatg
     3181 ttagacattc gcccaggact gatagcacag gctcccgggc cacgattccc tttactacag
     3241 cctggaattc caccacaacg cggtatccct cccccatcgg tacttgatgc agctcttcat
     3301 cctccacccc gcggaccttt tcctccagga gatcttttca gtcagccaga aagacctttt
     3361 ctggcccctg gaagaccaag tatagacaat gttcccaacc cagataaaag aataccactt
     3421 gggaatgaca atattcagca ggaaggggat agagattacc gctttcctcc tatagaaacc
     3481 agggagggca ttaccagacc tcctcaggtg gatgttaggg atgtggttgg gcgacgtcta
     3541 gatcccagag aaggccctgg aaggcctcca ttagatgcta gggatcattt tggaagacct
     3601 cctgtggaca tgagggagaa tcttgtgagg ccaagtctag accaccttgg tcgaagagac
     3661 cactttggct ttcccccaga gaagccttgg gggcctagag attttgatga gagagagcat
     3721 cgagttctgc ctgtctttgg tggtccaaaa ggcttacatg aagaaagagg tagatttcgg
     3781 gctggaaatt accgatttga tcctagaagt ggtccttgga acagaggatt tggtcaagaa
     3841 gttcacagag attttgatga ccgcagaaga ccctgggaga ggcagaggga tagggatgac
     3901 agagattttg atttctgcag agaaattaat ggaaatcgtc ttggacgaga tagaattcaa
     3961 aacacttggg ttccccctcc tcatgctcgg gtttttgatt atttcgaagg ggccacttct
     4021 caacggaaag gtgataatgt gcctcaagtt aatggtgaaa atacagagag acatgctcag
     4081 ccaccgcctt taccagtaca gaaggaccct gaactctatg agaaactggc gtcttcaggt
     4141 gacgtagaca aggaggagag cggcacagtt gctggtgtag agagtgaagc ggtggtagaa
     4201 agcacagaga ctgaggggac ataacatcac tcagtaggta aaagaaacct tttgtacagt
     4261 tgtcatctct gtaagaggtt aatggctgac tgcaccacac ttgttcatgt ttatctacca
     4321 gaactaagtt aatctgatgt tcatgttcac ctttctctta aaataattgt acaactgact
     4381 tgtatagaca ttgttcttaa tatgaacatg gtaggtaaac actttttttt tctgataacg
     4441 tataaatgtt gccccagatt cttttaacgt caaggagatg ctaacggctt gtcggagact
     4501 tcctatggaa gagaaggttt tagacgctgt cattgggttg ggtatggcaa tgacatattt
     4561 cagaacagca aggtgtggcc catttcctcc ataactctag gctgctgcag gattttaagg
     4621 agacagacaa agctatgaca ttttatgcaa ggactggctc tagattcttg aggagcataa
     4681 tacagagatt ttaaaaagtg attttgtaaa aatctccacg atggtctctg ttactccaaa
     4741 gtaagtgtgt gtgatttgtt cctcatactg caataagtaa aaagaaaaaa gcaaacaaca
     4801 taaacattca aagacgtttc aatgttgggt gaattttgtt tttagatgcc aataaaactt
     4861 acttgtttga taaaaaaaaa aaaaaaaaaa aa
//
