LOCUS       NM_001081096            1835 bp    mRNA    linear   ROD 30-APR-2024
DEFINITION  Mus musculus stabilizer of axonemal microtubules 1 (Saxo1), mRNA.
ACCESSION   NM_001081096 XM_131470
VERSION     NM_001081096.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE   1  (bases 1 to 1835)
  AUTHORS   Adams,D.J., Barlas,B., McIntyre,R.E., Salguero,I., van der
            Weyden,L., Barros,A., Vicente,J.R., Karimpour,N., Haider,A.,
            Ranzani,M., Turner,G., Thompson,N.A., Harle,V., Olvera-Leon,R.,
            Robles-Espinoza,C.D., Speak,A.O., Geisler,N., Weninger,W.J.,
            Geyer,S.H., Hewinson,J., Karp,N.A., Fu,B., Yang,F., Kozik,Z.,
            Choudhary,J., Yu,L., van Ruiten,M.S., Rowland,B.D., Lelliott,C.J.,
            Del Castillo Velasco-Herrera,M., Verstraten,R., Bruckner,L.,
            Henssen,A.G., Rooimans,M.A., de Lange,J., Mohun,T.J., Arends,M.J.,
            Kentistou,K.A., Coelho,P.A., Zhao,Y., Zecchini,H., Perry,J.R.B.,
            Jackson,S.P. and Balmus,G.
  CONSRTM   Sanger Mouse Genetics Project
  TITLE     Genetic determinants of micronucleus formation in vivo
  JOURNAL   Nature 627 (8002), 130-136 (2024)
   PUBMED   38355793
REFERENCE   2  (bases 1 to 1835)
  AUTHORS   Robertson,M.J., Kent,K., Tharp,N., Nozawa,K., Dean,L., Mathew,M.,
            Grimm,S.L., Yu,Z., Legare,C., Fujihara,Y., Ikawa,M., Sullivan,R.,
            Coarfa,C., Matzuk,M.M. and Garcia,T.X.
  TITLE     Large-scale discovery of male reproductive tract-specific genes
            through analysis of RNA-seq datasets
  JOURNAL   BMC Biol 18 (1), 103 (2020)
   PUBMED   32814578
  REMARK    Publication Status: Online-Only
COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
            NCBI review. The reference sequence was derived from AL824707.7 and
            AL824705.5.
            
            On Feb 6, 2007 this sequence version replaced XM_131470.4.
            
            Sequence Note: The RefSeq transcript and protein were derived from
            genomic sequence to make the sequence consistent with the reference
            genome assembly. The genomic coordinates used for the transcript
            record were based on alignments.
            
            ##Evidence-Data-START##
            Transcript exon combination :: AK015673.1, SRR5189685.162749.1
                                           [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMN00849384 [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression,
                                      longest protein
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-329               AL824707.7         107910-108238       c
            330-509             AL824707.7         37675-37854         c
            510-715             AL824707.7         28808-29013         c
            716-1835            AL824705.5         137091-138210       c
FEATURES             Location/Qualifiers
     source          1..1835
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /db_xref="taxon:10090"
                     /chromosome="4"
                     /map="4 40.69 cM"
     gene            1..1835
                     /gene="Saxo1"
                     /gene_synonym="4930500O09Rik; Fam154a"
                     /note="stabilizer of axonemal microtubules 1"
                     /db_xref="GeneID:75811"
                     /db_xref="MGI:MGI:1923061"
     exon            1..329
                     /gene="Saxo1"
                     /gene_synonym="4930500O09Rik; Fam154a"
                     /inference="alignment:Splign:2.1.0"
     CDS             289..1719
                     /gene="Saxo1"
                     /gene_synonym="4930500O09Rik; Fam154a"
                     /note="likely ortholog of H. sapiens chromosome 9 open
                     reading frame 138 (C9orf138); family with sequence
                     similarity 154, member A; stablizer of axonemal
                     microtubules 1"
                     /codon_start=1
                     /product="stabilizer of axonemal microtubules 1"
                     /protein_id="NP_001074565.1"
                     /db_xref="CCDS:CCDS38795.1"
                     /db_xref="GeneID:75811"
                     /db_xref="MGI:MGI:1923061"
                     /translation="MGKRTCICNLCSCGRHRCPHLPTKIYDKTEKTRLLSEYTENYPI
                     YQSYLPRNSFKPEWCYRKPSAPMEGLTTCRRDFGLHKMLPVTFHQPDTYVPSQETMDL
                     LTTYKHDFNYLPTCPVGLIKPRDSKFPNGDKIMQYLPTYKVDYLPWNQPRRELLRPPH
                     KYRPESSKFENRTTHQDDYTMKGLVTTVSCKPPSKSKIYNIPLEDLTNYKMSYVPHPV
                     EKRFVKEAEKYIPCDIPFENLTTHKESYRGLLGEPAKSTKPPAKFPVHDAPFTNTTEV
                     QEKFQAWPTPQMVPKAPVVYVPPEEKMDLLTTVQTHYKYLKGSPAITCRPVPSIKKSK
                     CFESSTTTKDDFKQWAAVNTKPIRPTLHLSLPAEPLDCQTTTKTCFVAHPPIITENYK
                     PPWVGLRRNIPVEGQTTYSINFTPKDLGKCPASYMEPPGYIFEEVDSMGHKIYRSISQ
                     TGSRQNSSISICDTEKPGQKELEVSA"
     exon            330..509
                     /gene="Saxo1"
                     /gene_synonym="4930500O09Rik; Fam154a"
                     /inference="alignment:Splign:2.1.0"
     exon            510..715
                     /gene="Saxo1"
                     /gene_synonym="4930500O09Rik; Fam154a"
                     /inference="alignment:Splign:2.1.0"
     exon            716..1835
                     /gene="Saxo1"
                     /gene_synonym="4930500O09Rik; Fam154a"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 gtggcttgca ggggccaggc tgtgctggca ggtgggtgct tcccactggc cgcagtggca
       61 gcagcttaca gacgtgagcc ggcctggctt gctgtctgtg ctaagtgctg cctgtttgcc
      121 caaggccagc ctcaggaaag gaatagacta cagaattttg caaaagggcc acctaagttt
      181 ccttctgagc aaaacagcat cggtcaaggc accgaagaag tgtgatcgtt gtcccaggca
      241 gctgggatcc tctaggcgat tgccttagtg gaaagtccga ggtgaaggat ggggaagagg
      301 acttgcatct gcaacctgtg ctcctgcggg cggcatcgct gtccacatct ccctacgaag
      361 atttatgata aaacagagaa aacacgtctt ctctccgagt acaccgagaa ttatccgatc
      421 tatcagtctt acctgcccag aaattccttc aagcccgagt ggtgctaccg gaaaccatct
      481 gcaccaatgg aaggtctgac cacatgcagg agagattttg ggcttcacaa aatgttaccg
      541 gtgacattcc accagcctga cacatatgtt ccgagtcaag agactatgga tttactcaca
      601 acgtataaac acgattttaa ctacctccct acctgtccag ttggcctcat caaacctcgg
      661 gacagtaaat ttccaaatgg tgacaagata atgcaatatc tgcctaccta caaagttgat
      721 tatttaccct ggaaccagcc aagacgggag cttcttcgtc ctccacacaa gtaccggcca
      781 gagtcttcca agtttgaaaa cagaaccaca catcaggatg actacaccat gaaaggcctt
      841 gtgactactg tgagctgtaa gcctccatcc aagtcaaaaa tctacaacat ccccttggaa
      901 gacctgacta actacaagat gagttatgtg ccccaccctg tggagaagcg cttcgttaag
      961 gaggcagaga aatatatacc ctgtgacatc ccctttgaga acctgaccac ccacaaagag
     1021 tcctaccgag gcctgctagg ggagcctgcc aagagcacaa aacctccagc caagttcccc
     1081 gtgcacgatg cacctttcac caacaccaca gaggttcagg agaaatttca agcctggcca
     1141 acaccccaga tggtccccaa agctcccgtt gtgtatgtcc ctcccgagga gaagatggat
     1201 cttctgacaa ctgtgcagac ccattacaag tacctcaagg gtagccctgc tataacttgc
     1261 cgacctgtgc cttccattaa gaagagcaag tgctttgaaa gctcaaccac caccaaggat
     1321 gacttcaagc agtgggcagc cgtgaacaca aagccgatca gacccactct gcacctgagc
     1381 ttgcctgctg aacctttgga ctgccagacc accactaaga cgtgctttgt ggcgcatcca
     1441 cctatcatta ctgaaaacta caagcccccc tgggttggcc ttcggagaaa catccccgta
     1501 gagggccaga ctacttattc catcaacttt actcccaagg atttgggcaa gtgcccagca
     1561 tcatacatgg agcctccggg ctatatcttc gaggaagtgg attctatggg gcacaagatc
     1621 tataggtcaa tttcccagac aggttctagg cagaacagtt ctatttctat atgtgataca
     1681 gaaaagcctg gtcagaagga actagaagtg tcagcctgac tttgaaaaaa aaagaaaaac
     1741 attcaaaacc tgcaaaatac ctttaaaagc agacaactaa aaatccattg aagaatttcc
     1801 caaaaatgaa aagaaaaatg taaaatacct acctc
//
