LOCUS       NM_025364               1069 bp    mRNA    linear   ROD 02-MAY-2024
DEFINITION  Mus musculus SAP domain containing ribonucleoprotein (Sarnp),
            transcript variant 1, mRNA.
ACCESSION   NM_025364
VERSION     NM_025364.3
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE   1  (bases 1 to 1069)
  AUTHORS   Adams,D.J., Barlas,B., McIntyre,R.E., Salguero,I., van der
            Weyden,L., Barros,A., Vicente,J.R., Karimpour,N., Haider,A.,
            Ranzani,M., Turner,G., Thompson,N.A., Harle,V., Olvera-Leon,R.,
            Robles-Espinoza,C.D., Speak,A.O., Geisler,N., Weninger,W.J.,
            Geyer,S.H., Hewinson,J., Karp,N.A., Fu,B., Yang,F., Kozik,Z.,
            Choudhary,J., Yu,L., van Ruiten,M.S., Rowland,B.D., Lelliott,C.J.,
            Del Castillo Velasco-Herrera,M., Verstraten,R., Bruckner,L.,
            Henssen,A.G., Rooimans,M.A., de Lange,J., Mohun,T.J., Arends,M.J.,
            Kentistou,K.A., Coelho,P.A., Zhao,Y., Zecchini,H., Perry,J.R.B.,
            Jackson,S.P. and Balmus,G.
  CONSRTM   Sanger Mouse Genetics Project
  TITLE     Genetic determinants of micronucleus formation in vivo
  JOURNAL   Nature 627 (8002), 130-136 (2024)
   PUBMED   38355793
REFERENCE   2  (bases 1 to 1069)
  AUTHORS   Dietrich,J.E., Panavaite,L., Gunther,S., Wennekamp,S., Groner,A.C.,
            Pigge,A., Salvenmoser,S., Trono,D., Hufnagel,L. and Hiiragi,T.
  TITLE     Venus trap in the mouse embryo reveals distinct molecular dynamics
            underlying specification of first embryonic lineages
  JOURNAL   EMBO Rep 16 (8), 1005-1021 (2015)
   PUBMED   26142281
REFERENCE   3  (bases 1 to 1069)
  AUTHORS   Guo,G., Huss,M., Tong,G.Q., Wang,C., Li Sun,L., Clarke,N.D. and
            Robson,P.
  TITLE     Resolution of cell fate decisions revealed by single-cell gene
            expression analysis from zygote to blastocyst
  JOURNAL   Dev Cell 18 (4), 675-685 (2010)
   PUBMED   20412781
REFERENCE   4  (bases 1 to 1069)
  AUTHORS   Yokoyama,S., Ito,Y., Ueno-Kudoh,H., Shimizu,H., Uchibe,K.,
            Albini,S., Mitsuoka,K., Miyaki,S., Kiso,M., Nagai,A., Hikata,T.,
            Osada,T., Fukuda,N., Yamashita,S., Harada,D., Mezzano,V., Kasai,M.,
            Puri,P.L., Hayashizaki,Y., Okado,H., Hashimoto,M. and Asahara,H.
  TITLE     A systems approach reveals that the myogenesis genome network is
            regulated by the transcriptional repressor RP58
  JOURNAL   Dev Cell 17 (6), 836-848 (2009)
   PUBMED   20059953
REFERENCE   5  (bases 1 to 1069)
  AUTHORS   Feng,J., Lawson,M.A. and Melamed,P.
  TITLE     A proteomic comparison of immature and mature mouse gonadotrophs
            reveals novel differentially expressed nuclear proteins that
            regulate gonadotropin gene transcription and RNA splicing
  JOURNAL   Biol Reprod 79 (3), 546-561 (2008)
   PUBMED   18480465
REFERENCE   6  (bases 1 to 1069)
  AUTHORS   Blackshaw,S., Harpavat,S., Trimarchi,J., Cai,L., Huang,H.,
            Kuo,W.P., Weber,G., Lee,K., Fraioli,R.E., Cho,S.H., Yung,R.,
            Asch,E., Ohno-Machado,L., Wong,W.H. and Cepko,C.L.
  TITLE     Genomic analysis of mouse retinal development
  JOURNAL   PLoS Biol 2 (9), E247 (2004)
   PUBMED   15226823
REFERENCE   7  (bases 1 to 1069)
  AUTHORS   Shu,H., Chen,S., Bi,Q., Mumby,M. and Brekken,D.L.
  TITLE     Identification of phosphoproteins and their phosphorylation sites
            in the WEHI-231 B lymphoma cell line
  JOURNAL   Mol Cell Proteomics 3 (3), 279-286 (2004)
   PUBMED   14729942
REFERENCE   8  (bases 1 to 1069)
  AUTHORS   Stryke,D., Kawamoto,M., Huang,C.C., Johns,S.J., King,L.A.,
            Harper,C.A., Meng,E.C., Lee,R.E., Yee,A., L'Italien,L.,
            Chuang,P.T., Young,S.G., Skarnes,W.C., Babbitt,P.C. and Ferrin,T.E.
  TITLE     BayGenomics: a resource of insertional mutations in mouse embryonic
            stem cells
  JOURNAL   Nucleic Acids Res 31 (1), 278-281 (2003)
   PUBMED   12520002
REFERENCE   9  (bases 1 to 1069)
  AUTHORS   Nelson,P.S., Pritchard,C., Abbott,D. and Clegg,N.
  TITLE     The human (PEDB) and mouse (mPEDB) Prostate Expression Databases
  JOURNAL   Nucleic Acids Res 30 (1), 218-220 (2002)
   PUBMED   11752298
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            AC131081.7, AA790241.1, AA881913.1, AK003453.1 and AC122380.4.
            
            On Jan 4, 2018 this sequence version replaced NM_025364.2.
            
            ##Evidence-Data-START##
            Transcript exon combination :: BC027510.1, AK003453.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMN00849375, SAMN00849380
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression,
                                      longest protein
            ##RefSeq-Attributes-END##
            COMPLETENESS: complete on the 3' end.
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-11                AC131081.7         162598-162608
            12-41               AA790241.1         1-30
            42-155              AA881913.1         7-120
            156-1048            AK003453.1         1-893
            1049-1069           AC122380.4         35254-35274
FEATURES             Location/Qualifiers
     source          1..1069
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6"
                     /db_xref="taxon:10090"
                     /chromosome="10"
                     /map="10 77.16 cM"
     gene            1..1069
                     /gene="Sarnp"
                     /gene_synonym="1110005A23Rik; Cip29"
                     /note="SAP domain containing ribonucleoprotein"
                     /db_xref="GeneID:66118"
                     /db_xref="MGI:MGI:1913368"
     exon            1..208
                     /gene="Sarnp"
                     /gene_synonym="1110005A23Rik; Cip29"
                     /inference="alignment:Splign:2.1.0"
     CDS             173..805
                     /gene="Sarnp"
                     /gene_synonym="1110005A23Rik; Cip29"
                     /note="isoform 1 is encoded by transcript variant 1;
                     nuclear protein Hcc-1"
                     /codon_start=1
                     /product="SAP domain-containing ribonucleoprotein isoform
                     1"
                     /protein_id="NP_079640.1"
                     /db_xref="CCDS:CCDS36092.1"
                     /db_xref="GeneID:66118"
                     /db_xref="MGI:MGI:1913368"
                     /translation="MAAETVELHKLKLAELKQECLARGLETKGIKQDLINRLQAYLED
                     HAEEEANEEDVLGDETEEEEPKPIELPVKEEEPPEKAVDMASEKKVVKITSGIPQTER
                     MQKRAERFNVPVSLESKKAARAARFGISSVPTKGLSSDTKPMVNLDKLKERAQRFGLN
                     VSSISRKSEDDEKLKKRKERFGIVTSSAGTGTTEDTEAKKRKRAERFGIA"
     exon            209..308
                     /gene="Sarnp"
                     /gene_synonym="1110005A23Rik; Cip29"
                     /inference="alignment:Splign:2.1.0"
     exon            309..355
                     /gene="Sarnp"
                     /gene_synonym="1110005A23Rik; Cip29"
                     /inference="alignment:Splign:2.1.0"
     exon            356..423
                     /gene="Sarnp"
                     /gene_synonym="1110005A23Rik; Cip29"
                     /inference="alignment:Splign:2.1.0"
     exon            424..475
                     /gene="Sarnp"
                     /gene_synonym="1110005A23Rik; Cip29"
                     /inference="alignment:Splign:2.1.0"
     exon            476..549
                     /gene="Sarnp"
                     /gene_synonym="1110005A23Rik; Cip29"
                     /inference="alignment:Splign:2.1.0"
     exon            550..578
                     /gene="Sarnp"
                     /gene_synonym="1110005A23Rik; Cip29"
                     /inference="alignment:Splign:2.1.0"
     exon            579..604
                     /gene="Sarnp"
                     /gene_synonym="1110005A23Rik; Cip29"
                     /inference="alignment:Splign:2.1.0"
     exon            605..673
                     /gene="Sarnp"
                     /gene_synonym="1110005A23Rik; Cip29"
                     /inference="alignment:Splign:2.1.0"
     exon            674..763
                     /gene="Sarnp"
                     /gene_synonym="1110005A23Rik; Cip29"
                     /inference="alignment:Splign:2.1.0"
     exon            764..1069
                     /gene="Sarnp"
                     /gene_synonym="1110005A23Rik; Cip29"
                     /inference="alignment:Splign:2.1.0"
     regulatory      1038..1043
                     /regulatory_class="polyA_signal_sequence"
                     /gene="Sarnp"
                     /gene_synonym="1110005A23Rik; Cip29"
                     /note="hexamer: AATAAA"
     polyA_site      1064
                     /gene="Sarnp"
                     /gene_synonym="1110005A23Rik; Cip29"
                     /note="major polyA site"
ORIGIN      
        1 tttagagagc cgtggaaagt ggccaagagg cgtgagagcg ccgccgccgc tgactaatgg
       61 gaagagccgt tggtgtgagg tgggagcaag agaaacagcg attggttgga tgagcctaag
      121 cgcctgaggt gggggccagc ggtgggggtc cggtggactg aggcgcatca agatggcggc
      181 cgagacggtg gagctccaca agctgaagct tgctgaacta aagcaagaat gtcttgctcg
      241 tggtttagag accaagggaa taaaacaaga tcttataaat aggctgcagg cctatcttga
      301 agaccatgca gaagaagaag caaatgaaga agatgtactg ggagatgaaa ctgaggaaga
      361 agaaccaaag cccatagaac tgcctgttaa agaggaagaa cctcctgaaa aggctgttga
      421 tatggcatcg gaaaagaagg tggtaaagat tacatctggg atacctcaga ctgaaagaat
      481 gcagaagagg gctgaacgat tcaatgtacc tgtaagcctg gagagtaaga aggctgcccg
      541 ggcggctagg tttggaattt cttcagttcc aacaaaaggt ttatcatctg acaccaagcc
      601 tatggttaac ctggataaac taaaggaaag agcacagaga tttggtttga atgtctcttc
      661 catctctaga aagtctgagg atgatgagaa gctgaagaaa cggaaggaga gatttgggat
      721 tgtgacaagt tcagctggaa ctggaaccac agaggataca gaggcaaaga aaagaaaaag
      781 agcagagcgt tttggaattg cataatgaaa agttcgtgct ttctgcacca tagtgttttc
      841 catttctcaa atttttcttg gttttatata tacatacaca cccctaccta cctacctatc
      901 tacatacaca gtcatgtgcc tcacagtgag gaagcatgta cgtttggtac atccttgaat
      961 tcagtagcag ttttatttaa ctgctcttct gcgtttaaga ttgttgtggt ttttgttttt
     1021 aattattttt gcttattaat aaaaaaggaa gaaaagaaaa tgtgtttta
//
