LOCUS       NM_020483               3281 bp    mRNA    linear   ROD 14-JUN-2024
DEFINITION  Mus musculus SAP30 binding protein (Sap30bp), transcript variant 1,
            mRNA.
ACCESSION   NM_020483
VERSION     NM_020483.4
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE   1  (bases 1 to 3281)
  AUTHORS   Bedogni,F. and Hevner,R.F.
  TITLE     Cell-Type-Specific Gene Expression in Developing Mouse Neocortex:
            Intermediate Progenitors Implicated in Axon Development
  JOURNAL   Front Mol Neurosci 14, 686034 (2021)
   PUBMED   34321999
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3281)
  AUTHORS   Yokoyama,S., Ito,Y., Ueno-Kudoh,H., Shimizu,H., Uchibe,K.,
            Albini,S., Mitsuoka,K., Miyaki,S., Kiso,M., Nagai,A., Hikata,T.,
            Osada,T., Fukuda,N., Yamashita,S., Harada,D., Mezzano,V., Kasai,M.,
            Puri,P.L., Hayashizaki,Y., Okado,H., Hashimoto,M. and Asahara,H.
  TITLE     A systems approach reveals that the myogenesis genome network is
            regulated by the transcriptional repressor RP58
  JOURNAL   Dev Cell 17 (6), 836-848 (2009)
   PUBMED   20059953
REFERENCE   3  (bases 1 to 3281)
  AUTHORS   Stryke,D., Kawamoto,M., Huang,C.C., Johns,S.J., King,L.A.,
            Harper,C.A., Meng,E.C., Lee,R.E., Yee,A., L'Italien,L.,
            Chuang,P.T., Young,S.G., Skarnes,W.C., Babbitt,P.C. and Ferrin,T.E.
  TITLE     BayGenomics: a resource of insertional mutations in mouse embryonic
            stem cells
  JOURNAL   Nucleic Acids Res 31 (1), 278-281 (2003)
   PUBMED   12520002
REFERENCE   4  (bases 1 to 3281)
  AUTHORS   Palmer,D.B., McVey,J.H., Purohit,R., Picard,J. and Dyson,P.J.
  TITLE     Characterization of a recent retroposon insertion on mouse
            chromosome 2 and localization of the cognate parental gene to
            chromosome 11
  JOURNAL   Mamm Genome 9 (2), 103-106 (1998)
   PUBMED   9457668
REFERENCE   5  (bases 1 to 3281)
  AUTHORS   Palmer,D.B., McVey,J.H., Robinson,P.J. and Dyson,P.J.
  TITLE     The chromatin structure of the mouse beta-2-microglobulin locus
  JOURNAL   Differentiation 51 (3), 201-207 (1992)
   PUBMED   1459361
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            AL645647.8.
            
            On Mar 9, 2023 this sequence version replaced NM_020483.3.
            
            ##Evidence-Data-START##
            Transcript exon combination :: SRR7345562.4148528.1, BC021757.1
                                           [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMN00849374, SAMN00849375
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression,
                                      longest protein
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-131               AL645647.8         95812-95942
            132-241             AL645647.8         97527-97636
            242-289             AL645647.8         100171-100218
            290-332             AL645647.8         114128-114170
            333-421             AL645647.8         119522-119610
            422-513             AL645647.8         122661-122752
            514-574             AL645647.8         123517-123577
            575-626             AL645647.8         123900-123951
            627-685             AL645647.8         124655-124713
            686-770             AL645647.8         126104-126188
            771-3281            AL645647.8         126372-128882
FEATURES             Location/Qualifiers
     source          1..3281
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6"
                     /db_xref="taxon:10090"
                     /chromosome="11"
                     /map="11 80.91 cM"
     gene            1..3281
                     /gene="Sap30bp"
                     /gene_synonym="2700016D05Rik; Hcngp"
                     /note="SAP30 binding protein"
                     /db_xref="GeneID:57230"
                     /db_xref="MGI:MGI:1927479"
     exon            1..131
                     /gene="Sap30bp"
                     /gene_synonym="2700016D05Rik; Hcngp"
                     /inference="alignment:Splign:2.1.0"
     exon            132..241
                     /gene="Sap30bp"
                     /gene_synonym="2700016D05Rik; Hcngp"
                     /inference="alignment:Splign:2.1.0"
     exon            242..289
                     /gene="Sap30bp"
                     /gene_synonym="2700016D05Rik; Hcngp"
                     /inference="alignment:Splign:2.1.0"
     exon            290..332
                     /gene="Sap30bp"
                     /gene_synonym="2700016D05Rik; Hcngp"
                     /inference="alignment:Splign:2.1.0"
     exon            333..421
                     /gene="Sap30bp"
                     /gene_synonym="2700016D05Rik; Hcngp"
                     /inference="alignment:Splign:2.1.0"
     exon            422..513
                     /gene="Sap30bp"
                     /gene_synonym="2700016D05Rik; Hcngp"
                     /inference="alignment:Splign:2.1.0"
     exon            514..574
                     /gene="Sap30bp"
                     /gene_synonym="2700016D05Rik; Hcngp"
                     /inference="alignment:Splign:2.1.0"
     exon            575..626
                     /gene="Sap30bp"
                     /gene_synonym="2700016D05Rik; Hcngp"
                     /inference="alignment:Splign:2.1.0"
     exon            627..685
                     /gene="Sap30bp"
                     /gene_synonym="2700016D05Rik; Hcngp"
                     /inference="alignment:Splign:2.1.0"
     exon            686..770
                     /gene="Sap30bp"
                     /gene_synonym="2700016D05Rik; Hcngp"
                     /inference="alignment:Splign:2.1.0"
     exon            771..3281
                     /gene="Sap30bp"
                     /gene_synonym="2700016D05Rik; Hcngp"
                     /inference="alignment:Splign:2.1.0"
     regulatory      1188..1193
                     /regulatory_class="polyA_signal_sequence"
                     /gene="Sap30bp"
                     /gene_synonym="2700016D05Rik; Hcngp"
                     /note="hexamer: ATTAAA"
     polyA_site      1209
                     /gene="Sap30bp"
                     /gene_synonym="2700016D05Rik; Hcngp"
                     /note="major polyA site"
     regulatory      3262..3267
                     /regulatory_class="polyA_signal_sequence"
                     /gene="Sap30bp"
                     /gene_synonym="2700016D05Rik; Hcngp"
                     /note="hexamer: ATTAAA"
     polyA_site      3281
                     /gene="Sap30bp"
                     /gene_synonym="2700016D05Rik; Hcngp"
ORIGIN      
        1 agccacaccg cgctgtggga gtaagatggc ggggaagaaa aatgttttgt cgtctcttgc
       61 aatttatgcg gaatattcag accctgaatc tgatggcgaa actggagtcg acgctgtagg
      121 cggagcgact gaggagaaag gtggtttggt atctgacgcc tatggagaag atgacttctc
      181 tcgcccaggg ggtgatgagg atggttatga agaagaggag gacgagaaca gtaagcagtc
      241 ggaagatgac gattcagaga ctgaaaaacc tgaggctgat gacccaaagg ataacacaga
      301 agcagagaag cgggatcccc aggaattagt ggcctccttt tctgaaaggg ttcgcaacat
      361 gtcacccgat gaaatcaaga tcccaccaga accgcctggc agatgttcaa atcacctaca
      421 agataagatc cagaagctct acgagcggaa gataaaggag gggatggata tgaactacat
      481 catccagagg aagaaggagt tccgcaaccc cagcatctac gagaaactga tccagttctg
      541 tgccattgat gagctgggca ccaactaccc aaaggatatg ttcgatcccc acggctggtc
      601 tgaagactcc tactatgagg cattagccaa ggcccagaag attgaaatgg acaaattaga
      661 aaaggccaaa aaggagcgaa ccaaaattga gtttgtaacg ggcaccaaga aaggcaccac
      721 gaccaatgcc acggccacca gcaccagtac tgccagcaca gctgtcgcag atgcccagaa
      781 gaggaagagc aagtgggact ctgccatccc cgtgacgaca atagcacagc ccaccatcct
      841 caccaccaca gccaccctgc cagcagtggt cactgtcacc actagtgcca gtggctccaa
      901 gaccaccgtc atctctgctg tgggcaccat cgtgaagaag gccaagcagt gaccagagga
      961 tgccccagga ctggcagtga ccagaggata ccccaggcct ggcaggacta cagtccagta
     1021 gcttccaccc actgggaggt gccactctgt gtgtttagga ctgagatgca ctccccacat
     1081 gccttccaag aggagcctct gtgacattcc agccggaagg acattacagc agaggcaatg
     1141 gtgtgcactg gacagggttt gtccagacac ctcttgggtt tcacccaatt aaaagtactg
     1201 cttcttggat cctggcatgt caggtggact ggcctctccc atgctgtgtt cgggcaaacc
     1261 tgaagttcag gtgcctctcg cgacagtcaa gatgttgctc aggatgaaca gtgcttgaca
     1321 ggccataggg gtgctcagag gggcagccca gggagcaacc gtgctcattc ccagtgtatg
     1381 cccagggcat gggcaggtgg gagctcaagg aggggccaga cacatccttt cctgttgtct
     1441 gttttcctat tttcctgatc ctcaacaatt cacaacaatt ctcaggcaat agcagaggcc
     1501 gctgctctct tgggtgcagt taaacactcc ctacagtgct tctgatacac acccaggctt
     1561 ttgaaatcag gccagataac agagggctgg gatgtgattc ccaacctgcc cagggcagga
     1621 gcaaagtgtg ggcacctggc caaggccgcc ccagcccctc agtgcccagt gagtgtggcc
     1681 agcaggatcc acgcagtggt agagatgaat cacctcctgc tctggccagg gcagcggctc
     1741 attgtttatg taaaggctgt gctcgtggga aggtctctgc caccccaccc ttcctatgtc
     1801 gttatctctg cccagcagca gcccctgggt agcaccagtg gccactctta gggccaggat
     1861 ccaccagccc agcgccagac agtgggaaga cttgtctttt gtgccccctg gcagctctcc
     1921 ttcacactca gcggaagggc tgagtgtcaa aagaggaagt ggggctgtga agggtcccca
     1981 tgctttcgtg ggaccaacag agacacagcc tctgacgttg tgtttggtat ttgtgtgacc
     2041 tggggactga cacgctgccc atgaaatctc taaaatgaaa acccagtcac tgttcctttc
     2101 tgtccttggg tgcactctgt gtcctgagca tctctggaaa ggtctaccct gcagggggct
     2161 cagggcaccc aggtctgagt aggcagctca ggagatagga gggcaccagc accttggctc
     2221 tggagtccag tctgcagcag ccctgaacca gtcctgagga gcctcagtaa caattcctgc
     2281 gggtgttggg aggggtctaa gatggtgaag caggagcttt gcaaagctga tatgagatca
     2341 gccacatccg accaagaacc aattagatag ggtctcatgg agccgaggct ttcaacatct
     2401 gaccctcctg ccccttcttc ccaagggctg ggattacgga catgaatcgt cacacttagt
     2461 ttatatggtg tgcacgattg aatccaggac ttcctgcatg ctaggcaaac gccacttctg
     2521 tcaggaatgt gtggggatgg gatgctgagg actgggctgt tcactgggcg tctccagact
     2581 gtcactgctg ccagttgacc gccttctttt ctgtagctca ggatccaggc tgagggattg
     2641 cagcagccca cgtttggtgt gtgtcctcca gttaccctat cagcggagtc cttcagggcc
     2701 atgctcagaa gctgggtaat ccccacaggt ttgtctggag gcttgcctgc tgagattgag
     2761 cgccaaccat cacagagtgg tgggtgcttc tgcctcttgg actgtggtca cctgactcgg
     2821 ttcgacaccc cttgtcccag gttcactctg actggattcc tgagtcttgg cttgagtaag
     2881 gcctaccact gtgctgtagg ccaagcgata ggcaggccac tattttgtgc tttgcacttt
     2941 tatatgttag ggtgcttggg atcaaacccg ggcttcctgt tctaccactg agccaattcc
     3001 aggttccaga cccttctgaa gaggaaaggt gttgcccaga ctagcctcaa atgagtctct
     3061 tgcccctgcc taccaagggc tggaattata ggtgtaaatg catacgaggc ttggttttgt
     3121 ttggtttcag cagggggtgg taaggaatca agacagaatt tctctatgta atggccctgg
     3181 ttgtcctgga actcactgtg tagaccaggc tggcattgaa ctaacaggag ttcctcctga
     3241 gtctgcctcc caagtgctgg gattaaagct gtgcaccacc a
//
