LOCUS       NM_027860               4675 bp    mRNA    linear   ROD 01-JUN-2024
DEFINITION  Mus musculus SANT and BTB domain regulator of CSR (Sanbr),
            transcript variant 1, mRNA.
ACCESSION   NM_027860 XM_203572
VERSION     NM_027860.3
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE   1  (bases 1 to 4675)
  AUTHORS   Bedogni,F. and Hevner,R.F.
  TITLE     Cell-Type-Specific Gene Expression in Developing Mouse Neocortex:
            Intermediate Progenitors Implicated in Axon Development
  JOURNAL   Front Mol Neurosci 14, 686034 (2021)
   PUBMED   34321999
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4675)
  AUTHORS   Zheng,S., Matthews,A.J., Rahman,N., Herrick-Reynolds,K., Sible,E.,
            Choi,J.E., Wishnie,A., Ng,Y.K., Rhodes,D., Elledge,S.J. and
            Vuong,B.Q.
  TITLE     The uncharacterized SANT and BTB domain-containing protein SANBR
            inhibits class switch recombination
  JOURNAL   J Biol Chem 296, 100625 (2021)
   PUBMED   33831416
REFERENCE   3  (bases 1 to 4675)
  AUTHORS   Nishimura,M., Yokoi,N., Miki,T., Horikawa,Y., Yoshioka,H.,
            Takeda,J., Ohara,O. and Seino,S.
  TITLE     Construction of a multi-functional cDNA library specific for mouse
            pancreatic islets and its application to microarray
  JOURNAL   DNA Res 11 (5), 315-323 (2004)
   PUBMED   15747579
REFERENCE   4  (bases 1 to 4675)
  AUTHORS   Okazaki,N., Kikuno,R., Ohara,R., Inamoto,S., Koseki,H., Hiraoka,S.,
            Saga,Y., Nagase,T., Ohara,O. and Koga,H.
  TITLE     Prediction of the coding sequences of mouse homologues of KIAA
            gene: III. the complete nucleotide sequences of 500 mouse
            KIAA-homologous cDNAs identified by screening of terminal sequences
            of cDNA clones randomly sampled from size-fractionated libraries
  JOURNAL   DNA Res 10 (4), 167-180 (2003)
   PUBMED   14621295
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            AK053838.1, BC079876.1, BC072622.1, BB522605.2 and BP759684.1.
            
            On Nov 19, 2016 this sequence version replaced NM_027860.2.
            
            ##Evidence-Data-START##
            RNAseq introns :: single sample supports all introns SAMN01164139
                              [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression,
                                      longest protein
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-14                AK053838.1         2-15
            15-1723             BC079876.1         1-1709
            1724-1726           BC072622.1         1714-1716
            1727-4135           BC079876.1         1713-4121
            4136-4154           BB522605.2         633-651
            4155-4675           BP759684.1         40-560              c
FEATURES             Location/Qualifiers
     source          1..4675
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6"
                     /db_xref="taxon:10090"
                     /chromosome="11"
                     /map="11 14.33 cM"
     gene            1..4675
                     /gene="Sanbr"
                     /gene_synonym="0610010F05Rik; Kiaa1841; mKIAA1841"
                     /note="SANT and BTB domain regulator of CSR"
                     /db_xref="GeneID:71675"
                     /db_xref="MGI:MGI:1918925"
     exon            1..139
                     /gene="Sanbr"
                     /gene_synonym="0610010F05Rik; Kiaa1841; mKIAA1841"
                     /inference="alignment:Splign:2.1.0"
     exon            140..269
                     /gene="Sanbr"
                     /gene_synonym="0610010F05Rik; Kiaa1841; mKIAA1841"
                     /inference="alignment:Splign:2.1.0"
     exon            270..428
                     /gene="Sanbr"
                     /gene_synonym="0610010F05Rik; Kiaa1841; mKIAA1841"
                     /inference="alignment:Splign:2.1.0"
     CDS             279..2435
                     /gene="Sanbr"
                     /gene_synonym="0610010F05Rik; Kiaa1841; mKIAA1841"
                     /note="isoform 1 is encoded by transcript variant 1; SANT
                     and BTB domain regulator of class switch recombination"
                     /codon_start=1
                     /product="SANT and BTB domain regulator of class switch
                     recombination isoform 1"
                     /protein_id="NP_082136.2"
                     /db_xref="CCDS:CCDS36119.1"
                     /db_xref="GeneID:71675"
                     /db_xref="MGI:MGI:1918925"
                     /translation="MSRGYPENNNFLNNNNQMVLDMILYPLIGIPQTINWETVARLVP
                     GLTPKECVKRFDELKSCGSSPVDNQYNPLMATGEGPVETLATYIKSSLLDTQGDFQET
                     PVDQDTVSKAGRHSIATTRNCSSESENCTARNAGEETGESEGPNMVIHVCDEAKSLKE
                     DFICPRDLLISEMKYFAEYLSMDAQRWEEVDISVHCDVHIFNWLIKYVKRNTKESKDC
                     EIPALEPGNVISILISSEFLKMDSLVEQCIQYCHKNMNAIVAAPCNMNCINANLLTRI
                     ADLFTHNEIDDLKDKKDKFRSKLFCKKIERLFDPEYSNPDSRNNAATLYRCCLCKKLL
                     TRETERRIPCIPGKINVDRHGNIIYIHIRDKTWDVHEYLNSLFEELKSWRDVYWRLWG
                     TVNWLTCSRCYQAFLCIEFSHCQYHSEVVVYSSTVNSLNTVGTGIYPCCNQKVLRFDP
                     TQLTKGCKVRDHMVVLHDQGENDDSPSCPPAKILDDLHKHKDVIAVPFLKDAVSDPGV
                     GSCDEKGLEYEILLEPNTPWGSKTGELNAFLSLKNWTLQLKQQSLFSEEEEYTTGSEV
                     TEDEVGDEEEIAKKQRKKEKPKKFTKPPKKQLSSPCSQKKEKTLEKSTSRDVSPFVVS
                     MQKNKWDASRSLRFNQDAQREDDQRRMSEITGHLIKMRLGDLDRVKAKESKEFAGGIY
                     SRLEAQVRASVPVTARQNSSDKNQRSKSRFGQGRPA"
     exon            429..615
                     /gene="Sanbr"
                     /gene_synonym="0610010F05Rik; Kiaa1841; mKIAA1841"
                     /inference="alignment:Splign:2.1.0"
     exon            616..709
                     /gene="Sanbr"
                     /gene_synonym="0610010F05Rik; Kiaa1841; mKIAA1841"
                     /inference="alignment:Splign:2.1.0"
     exon            710..948
                     /gene="Sanbr"
                     /gene_synonym="0610010F05Rik; Kiaa1841; mKIAA1841"
                     /inference="alignment:Splign:2.1.0"
     exon            949..1007
                     /gene="Sanbr"
                     /gene_synonym="0610010F05Rik; Kiaa1841; mKIAA1841"
                     /inference="alignment:Splign:2.1.0"
     exon            1008..1168
                     /gene="Sanbr"
                     /gene_synonym="0610010F05Rik; Kiaa1841; mKIAA1841"
                     /inference="alignment:Splign:2.1.0"
     exon            1169..1255
                     /gene="Sanbr"
                     /gene_synonym="0610010F05Rik; Kiaa1841; mKIAA1841"
                     /inference="alignment:Splign:2.1.0"
     exon            1256..1366
                     /gene="Sanbr"
                     /gene_synonym="0610010F05Rik; Kiaa1841; mKIAA1841"
                     /inference="alignment:Splign:2.1.0"
     exon            1367..1490
                     /gene="Sanbr"
                     /gene_synonym="0610010F05Rik; Kiaa1841; mKIAA1841"
                     /inference="alignment:Splign:2.1.0"
     exon            1491..1643
                     /gene="Sanbr"
                     /gene_synonym="0610010F05Rik; Kiaa1841; mKIAA1841"
                     /inference="alignment:Splign:2.1.0"
     exon            1644..1789
                     /gene="Sanbr"
                     /gene_synonym="0610010F05Rik; Kiaa1841; mKIAA1841"
                     /inference="alignment:Splign:2.1.0"
     exon            1790..1889
                     /gene="Sanbr"
                     /gene_synonym="0610010F05Rik; Kiaa1841; mKIAA1841"
                     /inference="alignment:Splign:2.1.0"
     exon            1890..1922
                     /gene="Sanbr"
                     /gene_synonym="0610010F05Rik; Kiaa1841; mKIAA1841"
                     /inference="alignment:Splign:2.1.0"
     exon            1923..2022
                     /gene="Sanbr"
                     /gene_synonym="0610010F05Rik; Kiaa1841; mKIAA1841"
                     /inference="alignment:Splign:2.1.0"
     exon            2023..2114
                     /gene="Sanbr"
                     /gene_synonym="0610010F05Rik; Kiaa1841; mKIAA1841"
                     /inference="alignment:Splign:2.1.0"
     exon            2115..2143
                     /gene="Sanbr"
                     /gene_synonym="0610010F05Rik; Kiaa1841; mKIAA1841"
                     /inference="alignment:Splign:2.1.0"
     exon            2144..2217
                     /gene="Sanbr"
                     /gene_synonym="0610010F05Rik; Kiaa1841; mKIAA1841"
                     /inference="alignment:Splign:2.1.0"
     exon            2218..2306
                     /gene="Sanbr"
                     /gene_synonym="0610010F05Rik; Kiaa1841; mKIAA1841"
                     /inference="alignment:Splign:2.1.0"
     exon            2307..2398
                     /gene="Sanbr"
                     /gene_synonym="0610010F05Rik; Kiaa1841; mKIAA1841"
                     /inference="alignment:Splign:2.1.0"
     exon            2399..4665
                     /gene="Sanbr"
                     /gene_synonym="0610010F05Rik; Kiaa1841; mKIAA1841"
                     /inference="alignment:Splign:2.1.0"
     regulatory      3988..3993
                     /regulatory_class="polyA_signal_sequence"
                     /gene="Sanbr"
                     /gene_synonym="0610010F05Rik; Kiaa1841; mKIAA1841"
                     /note="hexamer: AGTAAA"
     polyA_site      4011
                     /gene="Sanbr"
                     /gene_synonym="0610010F05Rik; Kiaa1841; mKIAA1841"
     regulatory      4115..4120
                     /regulatory_class="polyA_signal_sequence"
                     /gene="Sanbr"
                     /gene_synonym="0610010F05Rik; Kiaa1841; mKIAA1841"
                     /note="hexamer: AATAAA"
     polyA_site      4135
                     /gene="Sanbr"
                     /gene_synonym="0610010F05Rik; Kiaa1841; mKIAA1841"
                     /note="major polyA site"
ORIGIN      
        1 aggcgggtgc ggccgcggct cgtgaggccg cctcagcctg gcgtgtgcgc cgggtcgcgc
       61 cgttctgggc gcgagcgcgg gcggtgctgg ccgctgcagg tgacaccggc gcggtgaggg
      121 ccgccgcggc cctgtggaga tgaggaaact gagacacgga ttatctgaat tagacaatat
      181 cttaatggta gaaccaagat ataaagttgg acagtttgac ttcagaatct atacttgtaa
      241 ctcgtacatt gtactgggcc ttcagtaagc tctaaaagat gagtcgtgga tatccagaaa
      301 acaataattt tctgaataat aataaccaaa tggtattgga tatgattctt tatccattga
      361 ttggaatccc tcagaccatc aactgggaaa ctgtggcaag gcttgtgcct ggattaacgc
      421 ccaaagagtg tgtgaaaagg tttgatgagc taaagagctg tggaagttca cctgttgaca
      481 accagtataa ccctttaatg gctactggag agggtcctgt tgaaacttta gccacttaca
      541 ttaaatcttc acttctggac acacaaggag attttcaaga gactcctgtt gatcaagata
      601 cagtttctaa agcaggaaga catagtatag ctaccacaag gaattgctct tcagaaagtg
      661 aaaactgtac tgctcgtaat gctggagaag agactggaga atctgaaggg ccaaacatgg
      721 tgatccatgt atgtgatgaa gcaaaaagct tgaaagaaga ttttatttgc ccacgagatc
      781 ttttgatatc agaaatgaag tactttgctg aatatttatc catggatgcg cagcgctggg
      841 aagaagtgga catttcagtt cattgcgatg ttcacatttt caactggctg ataaaatatg
      901 ttaaacggaa cactaaggag agtaaagatt gtgagattcc cgctttagag ccagggaatg
      961 tcatttcaat ccttatttca tcagagttct tgaagatgga ttcactagtt gaacaatgta
     1021 ttcaatattg ccataaaaat atgaatgcca tagtagctgc tccatgcaac atgaactgta
     1081 tcaatgcaaa ccttcttaca cgcatagctg atctgttcac acacaatgaa attgatgact
     1141 taaaagacaa aaaagataag tttaggagta aactgttttg taagaagatt gaaagactct
     1201 ttgatcctga atactccaat ccagattcta gaaacaatgc agcaacactc tatcgatgct
     1261 gtttgtgtaa gaaactttta accagagaaa cagaaagaag aattccttgc atccctggaa
     1321 aaatcaatgt ggaccgacat ggaaatatta tctacatcca cataagagat aaaacctggg
     1381 atgtacatga atatttgaat agtctttttg aagaattaaa atcttggaga gatgtttatt
     1441 ggcgtttgtg gggcacagtc aactggctga cttgttcaag gtgttaccag gcttttctct
     1501 gtattgagtt ctcacattgt cagtatcact cagaagtggt agtttattct agcacagtaa
     1561 attcactaaa cactgtgggc actggaattt atccctgctg taaccagaag gttcttcgat
     1621 ttgatcctac tcagctcaca aagggctgta aggtgaggga ccacatggtg gttcttcatg
     1681 atcaaggaga aaatgatgat tcgccttctt gcccacctgc taaaatactg gatgatctgc
     1741 acaagcacaa agacgtcatt gctgtgcctt ttttaaaaga tgcagttagt gatcctgggg
     1801 ttggctcctg tgatgaaaaa ggcctggaat atgaaatttt actggaacca aatacaccgt
     1861 ggggctccaa aactggggag ctcaatgctt tcttgtcact gaaaaactgg actctgcagt
     1921 tgaaacaaca gtcgctgttc tcagaagagg aagagtatac cacggggtct gaggtcactg
     1981 aagatgaagt cggtgatgaa gaagaaattg ccaagaaaca aaggaaaaag gagaagccaa
     2041 agaaatttac taagccgcca aaaaaacaac tgtcctcacc ctgttctcaa aagaaagaga
     2101 agacactgga gaagtcaact tctagagatg tgtctccttt tgttgtgagt atgcagaaga
     2161 ataaatggga tgcctcaaga tccttgagat tcaaccaaga tgcacaaaga gaagatgatc
     2221 agcggcggat gtctgaaatt acagggcatc taataaaaat gagattgggt gatctggacc
     2281 gagtcaaggc aaaggaatca aaggaatttg caggaggtat ttattctagg cttgaagcac
     2341 aagtcagagc ctcagtacct gtcactgccc ggcagaacag ctcagacaaa aaccaaaggt
     2401 ctaaaagtcg ttttggtcaa gggcgtcctg cataaagcac cctaaacata aaaagagagg
     2461 aggtacactc tggacatctg aaatgcccac ttcctgaaga tcttcagtga ctgataggtg
     2521 ctctatgagt cattcctgca gaccacataa atcatgctac agtgactgct aggtgttcta
     2581 ttagttatcc ctgcaaacca caaaaatcat gcttacacaa atatatagtt aggttttgtt
     2641 aaaatcttaa ctatatatat gaatttttta tataaatttc tctttgtata attctaggct
     2701 gtgtaggaga taattgcaaa cttcacatag ttaggatttc taatatttgt tgccttttat
     2761 ttatttgaca aagaagaggc ctaacttgac aagtaactaa gttggtatga ccctaagaaa
     2821 ttaacagaat gactggtagt gttactatgc atgggcactg atcgttgtat gttttggggc
     2881 tgttgaatct taggcatagc attgagaaat gaattgtgta tgatgaactg tccagtgatg
     2941 ttaaatttag tttgcatgga tattaaggag tgacagatct cgaagctgta ttaatagaat
     3001 ttcaaggtga ggttatttca ataccatgct ggtcaagaag ggttgatctt tttcagtagt
     3061 attacgtggg aggtacaatg ttattgaact tctgtttctt tcagtttttc atgcttatct
     3121 gtaaatcatt tgagcctaaa atccaatcct tgcctcgctt ctggatgaag ctagtggcac
     3181 tctgagtggt gagtcatttc agttctgtgg cacggtcaga cccatccatt ctctaagtct
     3241 gcttgagctc cctcacagca tgattgctag gtacgaagag aggtcttaaa gttcccaggt
     3301 agaggagacg gctgggaact tcagatattc acataaaact gttttataga tcatgtttta
     3361 atttttttct aacaaggtag atagcatact cagggaaatt ttgttccaga ctgtaagcat
     3421 gtactaagtt atgtgtttgg aaattgttta taggtctctg agaaccgtga gatgcacact
     3481 gtttctatgt ttagtttttc tctgctttgt gattgatgtc ttcaaattat tcagataata
     3541 aatcttgatg atgtaaggga acagcaattg taaaagaaaa attcatgtct tacacctagt
     3601 ttacacaaaa agaaattata atttttagta tcttttagtt gctatatgaa gctcttaatt
     3661 atttggtaat tatgctttta atatctattt ggaaatttta ttctggtgta caaatgcctt
     3721 tcagttatct gatactttgg aaatagctta tatcatattt attttcaaga aagtatttct
     3781 ttgtatgtga tatgtaaatc ccacgagtac cagccttata gttggctcct ggattctctg
     3841 atagaaggat ttggatttat atgtgtaagc aatctatgat cattgtaatt agaagggaat
     3901 atgctctttt gattttcaca gatggtagaa gtgctcattg cttctcccca gagggggctg
     3961 ctttactgat tgatgttaac agactcgagt aaaatctgat tctctacaga atgtgctttg
     4021 tattttatat ctgtctgtga tacatggaca ggcatttctt ctgccaagta cgttaaggtt
     4081 ttccttacat taattctgag ctcaaactta ttgaaataaa tggcaatgac aaaaattgtg
     4141 gagaaagtcc cttgatctga cttgttctgc tgtctgagga gactggagtg ctctgtattc
     4201 tacataattc cctggaaaat tagctgtgaa aattggtgaa aaccttaggt tttaagatta
     4261 tttgagtgtg gcagcacacc ccatcactct ggaaactgaa gtaggaaaat cctccattca
     4321 agaccccgcc tcagaacatt tagcaaatca tttaagggtt gaaatactac agcgaacagg
     4381 cgtatagtat agctcaatag tagtcctgca gcacaccagg cgtatagctc aataatagta
     4441 cacttgcctc gggtgcacag tagcctggct ttgatccccg ctagcaccgt atgagtggaa
     4501 atgccacagg gaagctgcac aggtgcccag cacatatgtg ctacctttct acctttctct
     4561 gcagcgctca ggcaggagct ctgaggtgtt tcattgctct gctacctgag gctggaactg
     4621 tcatattttt tgctgatggc aaacttaaat aaacatttaa aaggcaaaaa aaaaa
//
