LOCUS       NM_178614               3463 bp    mRNA    linear   ROD 02-MAY-2024
DEFINITION  Mus musculus SAMM50 sorting and assembly machinery component
            (Samm50), mRNA.
ACCESSION   NM_178614
VERSION     NM_178614.5
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE   1  (bases 1 to 3463)
  AUTHORS   Adams,D.J., Barlas,B., McIntyre,R.E., Salguero,I., van der
            Weyden,L., Barros,A., Vicente,J.R., Karimpour,N., Haider,A.,
            Ranzani,M., Turner,G., Thompson,N.A., Harle,V., Olvera-Leon,R.,
            Robles-Espinoza,C.D., Speak,A.O., Geisler,N., Weninger,W.J.,
            Geyer,S.H., Hewinson,J., Karp,N.A., Fu,B., Yang,F., Kozik,Z.,
            Choudhary,J., Yu,L., van Ruiten,M.S., Rowland,B.D., Lelliott,C.J.,
            Del Castillo Velasco-Herrera,M., Verstraten,R., Bruckner,L.,
            Henssen,A.G., Rooimans,M.A., de Lange,J., Mohun,T.J., Arends,M.J.,
            Kentistou,K.A., Coelho,P.A., Zhao,Y., Zecchini,H., Perry,J.R.B.,
            Jackson,S.P. and Balmus,G.
  CONSRTM   Sanger Mouse Genetics Project
  TITLE     Genetic determinants of micronucleus formation in vivo
  JOURNAL   Nature 627 (8002), 130-136 (2024)
   PUBMED   38355793
REFERENCE   2  (bases 1 to 3463)
  AUTHORS   Darshi,M., Mendiola,V.L., Mackey,M.R., Murphy,A.N., Koller,A.,
            Perkins,G.A., Ellisman,M.H. and Taylor,S.S.
  TITLE     ChChd3, an inner mitochondrial membrane protein, is essential for
            maintaining crista integrity and mitochondrial function
  JOURNAL   J Biol Chem 286 (4), 2918-2932 (2011)
   PUBMED   21081504
REFERENCE   3  (bases 1 to 3463)
  AUTHORS   Nishimura,M., Yokoi,N., Miki,T., Horikawa,Y., Yoshioka,H.,
            Takeda,J., Ohara,O. and Seino,S.
  TITLE     Construction of a multi-functional cDNA library specific for mouse
            pancreatic islets and its application to microarray
  JOURNAL   DNA Res 11 (5), 315-323 (2004)
   PUBMED   15747579
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            AK039949.1, AK041783.1 and BP765539.1.
            
            On Jul 12, 2018 this sequence version replaced NM_178614.4.
            
            ##Evidence-Data-START##
            Transcript exon combination :: AK041783.1, BC119178.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMN00849374, SAMN00849375
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on single protein-coding transcript
            ##RefSeq-Attributes-END##
            COMPLETENESS: complete on the 3' end.
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-1666              AK039949.1         8-1673
            1667-2851           AK041783.1         1668-2852
            2852-3463           BP765539.1         1-612               c
FEATURES             Location/Qualifiers
     source          1..3463
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6"
                     /db_xref="taxon:10090"
                     /chromosome="15"
                     /map="15 39.78 cM"
     gene            1..3463
                     /gene="Samm50"
                     /gene_synonym="1110030L07Rik"
                     /note="SAMM50 sorting and assembly machinery component"
                     /db_xref="GeneID:68653"
                     /db_xref="MGI:MGI:1915903"
     exon            1..145
                     /gene="Samm50"
                     /gene_synonym="1110030L07Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            146..256
                     /gene="Samm50"
                     /gene_synonym="1110030L07Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            257..358
                     /gene="Samm50"
                     /gene_synonym="1110030L07Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            359..446
                     /gene="Samm50"
                     /gene_synonym="1110030L07Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            447..553
                     /gene="Samm50"
                     /gene_synonym="1110030L07Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            554..684
                     /gene="Samm50"
                     /gene_synonym="1110030L07Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            685..772
                     /gene="Samm50"
                     /gene_synonym="1110030L07Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            773..901
                     /gene="Samm50"
                     /gene_synonym="1110030L07Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            902..973
                     /gene="Samm50"
                     /gene_synonym="1110030L07Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            974..1060
                     /gene="Samm50"
                     /gene_synonym="1110030L07Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            1061..1131
                     /gene="Samm50"
                     /gene_synonym="1110030L07Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            1132..1199
                     /gene="Samm50"
                     /gene_synonym="1110030L07Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            1200..1346
                     /gene="Samm50"
                     /gene_synonym="1110030L07Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            1347..1488
                     /gene="Samm50"
                     /gene_synonym="1110030L07Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            1489..3446
                     /gene="Samm50"
                     /gene_synonym="1110030L07Rik"
                     /inference="alignment:Splign:2.1.0"
     regulatory      1649..1654
                     /regulatory_class="polyA_signal_sequence"
                     /gene="Samm50"
                     /gene_synonym="1110030L07Rik"
                     /note="hexamer: AATAAA"
     polyA_site      1667
                     /gene="Samm50"
                     /gene_synonym="1110030L07Rik"
                     /note="major polyA site"
     regulatory      3425..3430
                     /regulatory_class="polyA_signal_sequence"
                     /gene="Samm50"
                     /gene_synonym="1110030L07Rik"
                     /note="hexamer: AATAAA"
     polyA_site      3446
                     /gene="Samm50"
                     /gene_synonym="1110030L07Rik"
ORIGIN      
        1 aggtggtaca acatggcggc gctcggcacg cagcttccgt gacctgtagc cgagcctctt
       61 gtgtttgtag ctgagtttgg ttgggcgcgg gcaccgcctt ggggcagcag ccggagaggg
      121 agccatgggg acagtgcacg cccggagtct ggagcccctc ccgtcgagtg gaactgactt
      181 tggagcactg ggggaggaag ccgagtttgt ggaagttgag ccggaagcga aacaggaaat
      241 cctggaaaac aaagatgtgg tggttcagca tgttcatttt gatggacttg ggcggactaa
      301 ggatgacatc atcatttgtg aaatcggaga ggtctttaag gctaaaaacc tcattgaggt
      361 aatgcggcga tctcatgaag cccgggaaaa actgcttcgc ctaggaattt ttagacaagt
      421 ggatgttttg atcgatacat gtcatggtga agatgccctg cccaatgggt tagatgtcac
      481 ctttgaagtg acagagctga ggagactgac gggcagttac aacaccatgg ttggaaacaa
      541 cgaaggcagt atggtactcg gcctcaaact ccccaacctt ctgggacgag cagaaaaagt
      601 cactttccag ttttcttatg gaaccaaaga aacttcctac ggcctgtcct tcttcaagcc
      661 acagcctgga aacttcgaga gaaatttctc cgtaaactta tataaagtta ctgggcagtt
      721 cccgtggagc tcacttcggg agacagacag aggagtgtct gcagagtaca gttttcccct
      781 gtggaagacc agtcacactg tcaagtggga gggtgtgtgg cgggagctgg gctgcctctc
      841 gaggactgcg tcgttcgctg tgcggaagga aagtggacac tcactgaagt cgtctctctc
      901 gcatgccatg gtcatcgact ctcgaaattc atctatcttg ccaagaagag gggccttgtt
      961 caaagtcaac caggagctgg caggctacac tggaggagat gtgagcttca tcaaggaaga
     1021 ctttgagctt cagctgaata agccgctcgc cttggactcg gtattctcca cgtctctctg
     1081 gggtggaatg ctggtgccca tcggtgacaa gccatccagc attgctgaca ggttttacct
     1141 gggaggcccc acgagtgtcc gaggatttag catgcacagc attggacccc agagtgaagg
     1201 agattacctg ggcggcgagg cctactgggc tgggggcctg cacctctaca ccccactgcc
     1261 cttccggcca ggccagggtg gcttcggaga gcttttcaga actcactttt tcctcaatgc
     1321 gggcaacctg tgcaacctca actatggtga gggccccaaa gcccatatcc ggaagctagc
     1381 tgagtgcatc cgctggtcct atggagcagg cgtcgtcctc cgacttggca acatcgctcg
     1441 gctggagctg aactactgca ttcctatggg cgtgcagggg ggcgacagga tttgtgatgg
     1501 tgtccagttt ggagctggga ttcggttcct gtaacttgag tcccaggggc agcttggatg
     1561 agaaacaggc atctcccagg ctccaagcct atttggaggt gacacggttg agtgcttctg
     1621 ggccggaatc cttatgggaa atcacgtcaa taaattttaa acgctcagcg gtgtcctgga
     1681 tgtggtctgt ttttcaggcc atgcgtcttt atggacacat gcttttcctg aggacatgtg
     1741 acagtctgac ctgtgctgtc ctgggcctaa gggctttcag gtgacttctc agagcctttt
     1801 ccttgtagac tcctagagtc tactgttggg accccactta ccagaagtag ggctgagctg
     1861 tggggtggcc ctgaaggaca ctgaccttgt catgtcacag gttaccacct cagtgcagca
     1921 ggacctgcca gtgctggtat gatgctagga ttccgaggca gacgggaagt gcgctgtctg
     1981 ctgatagcca tggctgctcc tgcctgtcat gcttgtgact caggctgcac agctatcgtc
     2041 ttacaggaac ctgcgatgtc cagtgggcca taggctcagg tgctgctggg caagactgac
     2101 tgctaaagac ctctgtgctc tctcttcgga gctggcaggc cagacttctg cctctgctct
     2161 tttaaggaca gtcttgtaac atgaggtccc agatggaccc gatagctgca tttcaaggct
     2221 agctggtgag cacacccagc tctgcctgcg ccctgctcct ttcttgctcc agctgtgtgg
     2281 ttgtgattcc tcggtcttta aaggggggtc tgttggaagc cactcctgtc ccctgcttgg
     2341 atgctggtat ccgcagatac gcagggctgt cagataccat gtttcaggat tgctttgcag
     2401 gcaggaggca aaggtcttac ccaggctggc cttgaactct caggggtcct cagctcctca
     2461 tgtgctgggg tcacccgtgt gcacaccaca tcagagtgat gccgggcatg tgcacacggc
     2521 tgcctcaggc ctgtgttacc tccagcttac agtgtggagg cttgggccag aggggcggtt
     2581 catatctgtg atcccaacac taaggaacct gaagcaggag gattaccttg agttcaagta
     2641 caacttgagc tatggaagac tccatctcag aaaacttact aaagatgttg tactgaattg
     2701 tctcaggata aagttaagtc tggatgtgtt taggatagac acagttgttg tgggttttac
     2761 tttgtagcca agggtgacct tgatccaatc ctcctgcctt cccctcccaa gtgctggcat
     2821 tccaggcatg taccaccatg ttggatttac acaatgctgg ggatggagcc cagagctccg
     2881 tgcctgatgg gtgagcactc aacaactgag gcacatccct agccactcct gagtgctgtc
     2941 cctctgccag gctgagagct gggaggtggc gcctaagggg atgttagcta gccagcattg
     3001 ggacatggga gtctgtctat tctgatggag gtctctgtaa gtggtactta ggggataatt
     3061 ttctgtttac tataagattt atttatttat gtatatgggt atttttgcct tgtgtatata
     3121 tgtataccac atgggtaccc tgtgcctgtg gaggtcagaa agagggtatt ggattcccca
     3181 gaattggagt taaaaattgt tgtgggccac cctgtggatg ctgggacgtg aacccaggtc
     3241 ctctgccaaa gcagccagtg tgcttaacta ctgaagcccc ttgggggata ttcttagctt
     3301 taaaaaactg acataagctg ggcagtggag gtgatactca agagacagag cccagcctgg
     3361 tctacagagc cagttccagg acagccaggg ctacacacag aaacagaaca aacaaacaaa
     3421 aaataataaa tgtattttag agttaaaaaa aaaaaaaaaa aaa
//
