LOCUS       NM_177271               2495 bp    mRNA    linear   ROD 29-JUL-2024
DEFINITION  Mus musculus sterile alpha motif domain containing 5 (Samd5), mRNA.
ACCESSION   NM_177271
VERSION     NM_177271.3
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE   1  (bases 1 to 2495)
  AUTHORS   Yagai,T., Matsui,S., Harada,K., Inagaki,F.F., Saijou,E., Miura,Y.,
            Nakanuma,Y., Miyajima,A. and Tanaka,M.
  TITLE     Expression and localization of sterile alpha motif domain
            containing 5 is associated with cell type and malignancy of biliary
            tree
  JOURNAL   PLoS One 12 (4), e0175355 (2017)
   PUBMED   28388653
  REMARK    Publication Status: Online-Only
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            AK087498.1 and AK132444.1.
            
            On Jul 19, 2006 this sequence version replaced NM_177271.2.
            
            ##Evidence-Data-START##
            Transcript exon combination :: AK132444.1, AK087498.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMN00849374, SAMN00849375
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on expression
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-277               AK087498.1         2-278
            278-2495            AK132444.1         252-2469
FEATURES             Location/Qualifiers
     source          1..2495
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6"
                     /db_xref="taxon:10090"
                     /chromosome="10"
                     /map="10 3.15 cM"
     gene            1..2495
                     /gene="Samd5"
                     /gene_synonym="E130306M17Rik"
                     /note="sterile alpha motif domain containing 5"
                     /db_xref="GeneID:320825"
                     /db_xref="MGI:MGI:2444815"
     exon            1..704
                     /gene="Samd5"
                     /gene_synonym="E130306M17Rik"
                     /inference="alignment:Splign:2.1.0"
     CDS             246..767
                     /gene="Samd5"
                     /gene_synonym="E130306M17Rik"
                     /note="SAM domain-containing protein 5"
                     /codon_start=1
                     /product="sterile alpha motif domain-containing protein 5"
                     /protein_id="NP_796245.2"
                     /db_xref="CCDS:CCDS35836.1"
                     /db_xref="GeneID:320825"
                     /db_xref="MGI:MGI:2444815"
                     /translation="MCTNIVYEWLKALQLPQYAESFVDNGYDDLEVCKQIGDPDLDAI
                     GVLAPAHRRRILEAVHRLREQDAAAAGLYFTLEPQPVPPAPLVEAVPPGRRGEPCGSS
                     AQGTRGDPRGQPGAPCSRELVSYPKLKLKIMIRDKLVRDGIHLSKPPYSRKVPMAGIL
                     EYLMNWPKSSQNH"
     exon            705..2495
                     /gene="Samd5"
                     /gene_synonym="E130306M17Rik"
                     /inference="alignment:Splign:2.1.0"
     regulatory      2477..2482
                     /regulatory_class="polyA_signal_sequence"
                     /gene="Samd5"
                     /gene_synonym="E130306M17Rik"
                     /note="putative"
     polyA_site      2495
                     /gene="Samd5"
                     /gene_synonym="E130306M17Rik"
                     /note="putative"
ORIGIN      
        1 agtgcccgcg agcgccgcgc ctgctcgggg aatccacttc gccgctagac gctcctcgtt
       61 ttctctcgct ccctccccgg ctgctttcta tggctctgac tctgcggccg gagcctaacc
      121 actaagggag aaacttttcc tgctgtttct tctccccacc cctttccagg agaggattaa
      181 aagttgcaag aactggtgcc gcccgtgtca cttgggtact cgctggcgag ttccgagtct
      241 cagccatgtg caccaacata gtttacgagt ggctgaaagc gttacagctc ccacagtacg
      301 ctgagtcctt cgtggataat ggctacgatg acctggaagt gtgcaagcag atcggagacc
      361 cggacctgga cgccatcggg gtgctggctc ccgcgcaccg ccggcgcatc ctagaggctg
      421 tgcaccggct gcgggaacag gatgcggccg ctgccggcct ctacttcacc cttgaaccgc
      481 agcccgtgcc accggcaccg ctggtagaag cggtgccccc aggccgccgg ggggagccat
      541 gtggcagctc agcccagggc actcgcgggg acccccgtgg ccagccgggc gctccctgca
      601 gcagggagct ggtgagctac cctaagctga agctgaagat catgatccgg gataagctgg
      661 tccgcgatgg catccacctg agcaaacccc catactcacg caaggtccca atggctggca
      721 tcctagagta cttaatgaat tggccgaagt catcacagaa ccactagata tcatttttga
      781 gaggccgtgg cggactgatg agatgcggaa gactggaaag gggcgtattt aggaccttct
      841 ttcacaaagg gaactggatg gtgactctgc aaacacttat cagcttaacg ttttctcgga
      901 atattctgga attatcaact tagttagccg agtaatactc ttggagtagt caggagtaag
      961 gcagtgaccg accatctgtg gaaatatatt gaacttggtt ttcaatggac actccatgca
     1021 ggaagaagtc tgatacatct cttggaatct ctctcctttg ctcttggagt ttttcacaat
     1081 catagatagg gttgactaag acttgtggga aattactgat tttaagtata ctacataaaa
     1141 gtaggtttct tacaatagct acttaattat atagttttca aattagcctc tgtctctaga
     1201 aaagtaactt tcattttatg ttttaatgta catgttattt tacttcatat ggggcctatt
     1261 ttcactaagt tacaatattt catataattc tatataaact agtttgggga aggagctctt
     1321 actttaggtg ccttgtatag tgagttcaca tataagtata accataacac agacagatta
     1381 aggaaggaat tattttctga cttttaaagt gtaatctggt agaaggatga ctgttacatt
     1441 aggagtacca tgtcctgata cacatcagtt attcatattc ttcttggccc ttgcccacct
     1501 tcccaagttg ctttctctca tcccacccct cttccatgtg cttctgatac caggtagtga
     1561 gcagggatgt cggccttggc agtgggcaag aggagcctta tctgcacatc tttgctcacg
     1621 gaaaataaag gaaaggagag ggagggggaa ggaaacctgg agattatttt tttctttctc
     1681 atcattattt cctttgggta ttggtagtct gcttttctgc taagaaaata caactatgat
     1741 gatggggtct aaacttcgtc gagaaaaggc tataggtgat ttaacactgt taacaagcaa
     1801 ctgagactag cgagtttgga gagaccctca gctgtactgt actgtactgt accgtggtgt
     1861 gctgtactgt agagccaccc tttcactact cagaagtaca gcacggatga aagcttgtgc
     1921 cactataatt atggacacga acagaaaact tttaaaggca agagcttgat gttcactttg
     1981 tctctagaaa taggtaggca attaagaagg gattacatct ccagaggcgc tcatgacaga
     2041 atactgtttt taaaaaaaaa attcaaagtt taaccacttg agctgccgtc aggggtgaat
     2101 ttaggcactg tgcaaagcct ttctccggct taaatacaga tgtaaggaaa ttaagttcta
     2161 agagtgcatg tgagttgccc cttatgagct gcatacaatc aactgcttgt caccttttca
     2221 aataagctga tctgtaaaat acctgttaga aaaaaaaaaa tacctgttag atttttttaa
     2281 agaggtgagg gtgtctgcat agattactga tatgatttat tgtgataata aacggcttcc
     2341 tggttgagac ctcatttcca ggtgccgcat ctgtggcaga tttatttcac agatgtacat
     2401 ttgcatgcat ttgttgaact gtggctagca aggacccaat ttctgaaaaa tctattattt
     2461 tctccagagg caatagaata aaatcttctg cgacc
//
