LOCUS       NM_001290288            2063 bp    mRNA    linear   ROD 01-AUG-2024
DEFINITION  Mus musculus sterile alpha motif domain containing 15 (Samd15),
            mRNA.
ACCESSION   NM_001290288 XM_006542996 XM_138106
VERSION     NM_001290288.2
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE   1  (bases 1 to 2063)
  AUTHORS   Diez-Roux,G., Banfi,S., Sultan,M., Geffers,L., Anand,S., Rozado,D.,
            Magen,A., Canidio,E., Pagani,M., Peluso,I., Lin-Marq,N., Koch,M.,
            Bilio,M., Cantiello,I., Verde,R., De Masi,C., Bianchi,S.A.,
            Cicchini,J., Perroud,E., Mehmeti,S., Dagand,E., Schrinner,S.,
            Nurnberger,A., Schmidt,K., Metz,K., Zwingmann,C., Brieske,N.,
            Springer,C., Hernandez,A.M., Herzog,S., Grabbe,F., Sieverding,C.,
            Fischer,B., Schrader,K., Brockmeyer,M., Dettmer,S., Helbig,C.,
            Alunni,V., Battaini,M.A., Mura,C., Henrichsen,C.N.,
            Garcia-Lopez,R., Echevarria,D., Puelles,E., Garcia-Calero,E.,
            Kruse,S., Uhr,M., Kauck,C., Feng,G., Milyaev,N., Ong,C.K.,
            Kumar,L., Lam,M., Semple,C.A., Gyenesei,A., Mundlos,S., Radelof,U.,
            Lehrach,H., Sarmientos,P., Reymond,A., Davidson,D.R., Dolle,P.,
            Antonarakis,S.E., Yaspo,M.L., Martinez,S., Baldock,R.A., Eichele,G.
            and Ballabio,A.
  TITLE     A high-resolution anatomical atlas of the transcriptome in the
            mouse embryo
  JOURNAL   PLoS Biol 9 (1), e1000582 (2011)
   PUBMED   21267068
  REMARK    Publication Status: Online-Only
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            AC132609.3 and CJ060055.1.
            
            On Jun 14, 2018 this sequence version replaced NM_001290288.1.
            
            Sequence Note: This RefSeq record was created from transcript and
            genomic sequence data because no single transcript was available
            for the full length of the gene. The exon combination of this
            RefSeq is inferred based on a combination of mouse and orthologous
            transcript alignments.
            
            CCDS Note: This CCDS representation has an inferred exon
            combination due to a lack of full-length transcript support for
            this gene. It is supported by a combination of RNA-seq data,
            partial mouse transcript alignments and orthologous transcript
            alignments (e.g., human AK292571.1).
            
            ##Evidence-Data-START##
            Transcript exon combination :: SRR1660825.197772.1,
                                           SRR5189685.133192.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMN00849384, SAMN01164132
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on single protein-coding transcript
            ##RefSeq-Attributes-END##
            COMPLETENESS: complete on the 3' end.
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-1529              AC132609.3         181071-182599
            1530-1877           CJ060055.1         76-423
            1878-2063           AC132609.3         193916-194101
FEATURES             Location/Qualifiers
     source          1..2063
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6"
                     /db_xref="taxon:10090"
                     /chromosome="12"
                     /map="12 41.4 cM"
     gene            1..2063
                     /gene="Samd15"
                     /gene_synonym="Gm263"
                     /note="sterile alpha motif domain containing 15"
                     /db_xref="GeneID:238333"
                     /db_xref="MGI:MGI:2685109"
     exon            1..1529
                     /gene="Samd15"
                     /gene_synonym="Gm263"
                     /inference="alignment:Splign:2.1.0"
     CDS             36..1898
                     /gene="Samd15"
                     /gene_synonym="Gm263"
                     /note="SAM domain-containing protein 15"
                     /codon_start=1
                     /product="sterile alpha motif domain-containing protein
                     15"
                     /protein_id="NP_001277217.1"
                     /db_xref="CCDS:CCDS70409.1"
                     /db_xref="GeneID:238333"
                     /db_xref="MGI:MGI:2685109"
                     /translation="MSEVSGDYNSDSDESLSLQPKRTKSGKLHNANADTLFEVSSKLS
                     PNTDRDPGNVGNVPLEPTRTRKGDLVPVGKNHEVPDLQRQDVSVGVFKGPPTRTGTQL
                     PTKIDPEQKTPDIRSEKLRKSVEEEALPPSKMTKSEKKQKESIKEKSTEPYEVTKPKF
                     PDRKLRKSTEEADLKPHFKSTEQSGTEQPEQTKFPDKKLRQSTKKKVSGPLEDFEEES
                     RRPIDEASLELSQKRPLKASKKAQKSSFDEKFPEMLEQITVELLDDQEETQEESIKEK
                     VPEPLGDRKPSAQKHKLRKSSERSKLKDTLIEPSKDKDPGLQTQTEFPKEKLIKTTEK
                     TGDKPQQITDPDIQEKSQPEPTEKNLELPNKPKPEEERDLPKEDKPESSKPNYPAGKD
                     KLALPAKIKTEFIVGSPRESVESFSTLYETQEFLKDLQTDMNELFPIVDASESQTELR
                     DSTVLPQEVELLGRKETKPSLTPEFEHLTWSPERVAEWISDLGFPQYKECFTENFING
                     QKLIHVNCSNLPQMGITDFEDMKAISYHTRVLLGIEEPLFSRSISLPYRDNKGLFFEQ
                     KGHSGVKSDSLTLAKFVEAAGLQEYNPEIKAEEKKEDALPENSLEENEELYEAT"
     exon            1530..1628
                     /gene="Samd15"
                     /gene_synonym="Gm263"
                     /inference="alignment:Splign:2.1.0"
     exon            1629..1877
                     /gene="Samd15"
                     /gene_synonym="Gm263"
                     /inference="alignment:Splign:2.1.0"
     exon            1878..2063
                     /gene="Samd15"
                     /gene_synonym="Gm263"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 gaggttgcta ggaggccttg ggcgcatcga ctgacatgtc tgaagtctca ggagattata
       61 attctgactc cgatgagagt ctgagtctgc agcctaaaag aaccaaatct ggtaaattac
      121 ataatgctaa cgcagacacc ttgtttgagg taagctctaa gctgtcccca aatactgacc
      181 gagacccagg aaatgtagga aatgtgccac tagagccaac caggacacgc aagggggatt
      241 tggtgcccgt aggtaaaaat catgaggtgc cagacctaca acgacaggac gtttcagtag
      301 gtgtgttcaa aggaccacct acaagaacag gtacacagct accaacaaaa atagatccag
      361 agcagaagac accagatatt cgaagtgaaa aactaagaaa atcagttgaa gaggaagctc
      421 tacctccatc caagatgacc aaatcggaaa agaaacaaaa agagtcaatt aaagaaaaaa
      481 gtacagagcc atatgaggta actaaaccta agttcccaga ccggaagcta aggaagtcta
      541 ctgaggaagc agatctcaaa cctcacttca agtccacaga gcagtcaggc acagagcaac
      601 ctgagcagac taagttccca gacaaaaaac taagacagtc aactaaaaag aaagtctcag
      661 ggccactgga ggattttgaa gaagaatcaa gaagacccat tgatgaagca agtctagaac
      721 tctcacaaaa gagaccatta aaggcttcaa agaaagcaca aaaaagctct tttgatgaaa
      781 aatttccaga gatgctagaa cagattactg tagaactact agatgaccaa gaggagacac
      841 aagaagagtc cattaaggag aaagttccag aaccattagg ggaccggaaa ccatcagctc
      901 aaaagcacaa gctgagaaaa tcaagtgaaa ggtctaaatt aaaggacaca ttaatagagc
      961 caagtaagga caaggacccg gggctacaaa cacagactga atttccaaag gagaaactaa
     1021 taaagacaac ggagaaaacg ggtgacaagc cacagcagat aactgatcca gacattcaag
     1081 agaagtcgca gccagaacca accgagaaaa atctagagtt accaaataaa cccaagccag
     1141 aagaggagag agacctcccc aaggaagaca aaccagaatc aagcaaacct aattatcctg
     1201 caggcaaaga taagctagca ttaccagcca agattaaaac tgagtttata gtaggatctc
     1261 ctagagaaag cgtagagtcc ttcagtacat tgtacgaaac ccaggagttc ctcaaagacc
     1321 ttcagactga catgaacgaa ctgttcccaa tcgttgatgc ttcagagtct cagacagaac
     1381 tgagggattc tacagtgtta ccccaggagg tggagctact aggacgtaaa gaaaccaagc
     1441 caagtcttac cccagagttt gagcatctta cctggagccc agaaagggtt gcagagtgga
     1501 ttagtgatct aggcttccct caatacaagg agtgttttac tgaaaacttc atcaatggtc
     1561 aaaaactcat ccacgtaaac tgctccaacc ttcctcagat gggaataact gattttgaag
     1621 acatgaaggc aatatcgtac cacacccgag tgctgctggg gatcgaggag ccactgttca
     1681 gccgcagcat cagccttccc tacagagaca acaagggctt gttctttgag cagaaagggc
     1741 acagtggagt aaagtctgat tccttgacct tggcaaaatt tgttgaagca gcaggattac
     1801 aggagtataa tccagagata aaagctgagg aaaagaaaga agacgcactg ccagaaaaca
     1861 gcttggaaga aaatgaggaa ctctatgagg ccacttaaag atggggtgtg gcttgacagc
     1921 aatgctgctg atctggggtc acccacactt ctgtgtgttg aactgcctgg gcctgatgac
     1981 ccctggccta catcagataa gagcatgtct tagtctgatt gcaatgattc tgagaataaa
     2041 aataaagaca aagcctagag agt
//
