LOCUS       NM_001368725            1468 bp    mRNA    linear   ROD 01-JUN-2024
DEFINITION  Mus musculus sterile alpha motif domain containing 13 (Samd13),
            transcript variant 1, mRNA.
ACCESSION   NM_001368725 XM_011240266
VERSION     NM_001368725.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE   1  (bases 1 to 1468)
  AUTHORS   Church,D.M., Goodstadt,L., Hillier,L.W., Zody,M.C., Goldstein,S.,
            She,X., Bult,C.J., Agarwala,R., Cherry,J.L., DiCuccio,M.,
            Hlavina,W., Kapustin,Y., Meric,P., Maglott,D., Birtle,Z.,
            Marques,A.C., Graves,T., Zhou,S., Teague,B., Potamousis,K.,
            Churas,C., Place,M., Herschleb,J., Runnheim,R., Forrest,D.,
            Amos-Landgraf,J., Schwartz,D.C., Cheng,Z., Lindblad-Toh,K.,
            Eichler,E.E. and Ponting,C.P.
  CONSRTM   Mouse Genome Sequencing Consortium
  TITLE     Lineage-specific biology revealed by a finished genome assembly of
            the mouse
  JOURNAL   PLoS Biol 7 (5), e1000112 (2009)
   PUBMED   19468303
REFERENCE   2  (bases 1 to 1468)
  AUTHORS   Mootha,V.K., Bunkenborg,J., Olsen,J.V., Hjerrild,M.,
            Wisniewski,J.R., Stahl,E., Bolouri,M.S., Ray,H.N., Sihag,S.,
            Kamal,M., Patterson,N., Lander,E.S. and Mann,M.
  TITLE     Integrated analysis of protein composition, tissue diversity, and
            gene regulation in mouse mitochondria
  JOURNAL   Cell 115 (5), 629-640 (2003)
   PUBMED   14651853
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            AC114618.9.
            
            On Feb 22, 2019 this sequence version replaced XM_011240266.1.
            
            Sequence Note: The RefSeq transcript and protein were derived from
            genomic sequence to make the sequence consistent with the reference
            genome assembly. The genomic coordinates used for the transcript
            record were based on alignments.
            
            ##Evidence-Data-START##
            CDS exon combination :: SRR1660815.376960.1 [ECO:0000331]
            RNAseq introns       :: single sample supports all introns
                                    SAMN00849381, SAMN01164135 [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            inferred exon combination :: based on alignments, homology
            RefSeq Select criteria    :: based on manual assertion,
                                         conservation
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-29                AC114618.9         117236-117264
            30-115              AC114618.9         119653-119738
            116-227             AC114618.9         137718-137829
            228-1468            AC114618.9         154071-155311
FEATURES             Location/Qualifiers
     source          1..1468
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6"
                     /db_xref="taxon:10090"
                     /chromosome="3"
                     /map="3 72.28 cM"
     gene            1..1468
                     /gene="Samd13"
                     /gene_synonym="1700013A07Rik; 1700095G21Rik;
                     4930483N21Rik; Gm1652"
                     /note="sterile alpha motif domain containing 13"
                     /db_xref="GeneID:75015"
                     /db_xref="MGI:MGI:2686498"
     exon            1..29
                     /gene="Samd13"
                     /gene_synonym="1700013A07Rik; 1700095G21Rik;
                     4930483N21Rik; Gm1652"
                     /inference="alignment:Splign:2.1.0"
     exon            30..115
                     /gene="Samd13"
                     /gene_synonym="1700013A07Rik; 1700095G21Rik;
                     4930483N21Rik; Gm1652"
                     /inference="alignment:Splign:2.1.0"
     CDS             63..371
                     /gene="Samd13"
                     /gene_synonym="1700013A07Rik; 1700095G21Rik;
                     4930483N21Rik; Gm1652"
                     /note="isoform 1 is encoded by transcript variant 1; SAM
                     domain-containing protein 13; Sterile alpha motif
                     domain-containing protein 13; DnaJ domain-containing
                     protein"
                     /codon_start=1
                     /product="sterile alpha motif domain-containing protein 13
                     isoform 1"
                     /protein_id="NP_001355654.1"
                     /db_xref="CCDS:CCDS89700.1"
                     /db_xref="GeneID:75015"
                     /db_xref="MGI:MGI:2686498"
                     /translation="MLSVDMDNKGNGPVGVKNSMENGRPPDPADWAVTDVVNYFRTAG
                     FEEQACAFQEQEIDGKSLLLMTRNDVLTGLQLKLGPALKIYEYHVKPLQTKHLKNNSS
                     "
     exon            116..227
                     /gene="Samd13"
                     /gene_synonym="1700013A07Rik; 1700095G21Rik;
                     4930483N21Rik; Gm1652"
                     /inference="alignment:Splign:2.1.0"
     exon            228..1468
                     /gene="Samd13"
                     /gene_synonym="1700013A07Rik; 1700095G21Rik;
                     4930483N21Rik; Gm1652"
                     /inference="alignment:Splign:2.1.0"
     regulatory      370..375
                     /regulatory_class="polyA_signal_sequence"
                     /gene="Samd13"
                     /gene_synonym="1700013A07Rik; 1700095G21Rik;
                     4930483N21Rik; Gm1652"
                     /note="hexamer: AGTAAA"
     polyA_site      403
                     /gene="Samd13"
                     /gene_synonym="1700013A07Rik; 1700095G21Rik;
                     4930483N21Rik; Gm1652"
                     /note="major polyA site"
     regulatory      447..452
                     /regulatory_class="polyA_signal_sequence"
                     /gene="Samd13"
                     /gene_synonym="1700013A07Rik; 1700095G21Rik;
                     4930483N21Rik; Gm1652"
                     /note="hexamer: AATACA"
     polyA_site      473
                     /gene="Samd13"
                     /gene_synonym="1700013A07Rik; 1700095G21Rik;
                     4930483N21Rik; Gm1652"
     regulatory      1443..1448
                     /regulatory_class="polyA_signal_sequence"
                     /gene="Samd13"
                     /gene_synonym="1700013A07Rik; 1700095G21Rik;
                     4930483N21Rik; Gm1652"
                     /note="hexamer: AATAAA"
     polyA_site      1468
                     /gene="Samd13"
                     /gene_synonym="1700013A07Rik; 1700095G21Rik;
                     4930483N21Rik; Gm1652"
ORIGIN      
        1 agtttcctga attagaactt aagatggcgt tgcggaagta aaggaactct gcccgctgcc
       61 ccatgctctc tgtcgacatg gacaacaagg gaaatggccc tgtcggtgtc aaaaattcca
      121 tggaaaatgg gaggcctccc gatcctgcag actgggccgt gacggacgtt gtcaattatt
      181 tccgaacagc aggatttgag gagcaagcct gtgcatttca agaacaggaa attgatggaa
      241 aatccctgct cttgatgacg agaaatgacg tgttgacagg acttcagcta aaactggggc
      301 ctgctctgaa aatctatgaa tatcatgtaa aacctcttca gaccaagcat ttaaagaaca
      361 actcttcata gtaaaatcaa actgaggtct cagtcaaaac acactgggtt gtaatttagt
      421 ttcatgttgt gaaactctgc aaacggaata catagatgtg cgtacgtaag gaatttcgat
      481 ccaacaaagt gttatcctat tggatagact aggcaatcca tcagctggcc tgactcagcc
      541 tggaggagca aaaacagagc ggatgtaaga tagttgtcct tgtcaaacca agttgtcatg
      601 gatgctttgg tacccctccc ctcaggggct ttggtattac aagaactttc tttgtttcat
      661 catagagtgg tttccatcaa ctcccttaaa aaagggtaga agtggaatgt gtgtccttgg
      721 gctacagact tagaaatgag aatgaacaaa gctctctggg gaggggagga agggaggagg
      781 gaggaagaaa ggaaggagga agaaaggagg gaggagggag gaggactgcc ctctccctgg
      841 agtcgtcgct ctgctcctag acatatgttc tttggatgga actgccaata cccttttttg
      901 tagagggttc tccacttgac cttgttaagg tttcacaggg atgtgctgcg ctgtgtttga
      961 atcgagcacg cactagaccc cctcttcagg agcagaactc tctctgagga gagagacttg
     1021 ttttgcactg gagatatcta tcgtgatcaa ctcactgtca ccggggtaag aatatttcct
     1081 gcttacgtca gttccctatt gctgaagaaa gcactgtttt gttttgtttt tgttactttg
     1141 attttttatg atttatattt ataataattt ctttttgaag cattttgcca agagctaata
     1201 gctggtccca gagctttgtt gatagcacag agtattttta tatattttat attgtttata
     1261 tatatatata gccctccatg atgctgtaat tgtttttttg gctgtccact gctgtgtttg
     1321 gtccctggtt tgagtaccta tctttcagaa cttgaagaag taggtttgct ccatctctgt
     1381 tccaagagac acttatgagt gatgtatggc catgtctcat caagttggtg attggtgatt
     1441 gcaataaaac atcatttcag ttcaccaa
//
